Wall clock time and date at job start Fri Apr 10 2020 17:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 120.00249 * 2 1 4 4 C 1.50704 * 119.99954 * 179.97438 * 2 1 3 5 5 H 1.08999 * 110.41661 * 127.71300 * 4 2 1 6 6 O 1.44422 * 110.37217 * 5.40752 * 4 2 1 7 7 C 1.44425 * 105.28037 * 200.65505 * 6 4 2 8 8 C 1.54802 * 104.80036 * 40.58410 * 7 6 4 9 9 C 1.54481 * 110.37356 * 250.02642 * 4 2 1 10 10 H 1.09001 * 110.50774 * 261.45359 * 9 4 2 11 11 C 1.50696 * 110.51361 * 24.02723 * 9 4 2 12 12 O 1.21286 * 119.99978 * 67.35694 * 11 9 4 13 13 N 1.34780 * 119.99798 * 247.36403 * 11 9 4 14 14 C 1.46495 * 119.99661 * 179.97438 * 13 11 9 15 15 H 1.09004 * 109.47335 * 34.99789 * 14 13 11 16 16 C 1.53008 * 109.47184 * 274.99792 * 14 13 11 17 17 C 1.52998 * 109.47420 * 154.99733 * 14 13 11 18 18 C 1.53946 * 113.74078 * 276.67855 * 17 14 13 19 19 N 1.47585 * 86.11617 * 222.04012 * 18 17 14 20 20 C 1.36930 * 134.49357 * 204.63483 * 19 18 17 21 21 H 1.08008 * 119.99860 * 180.02562 * 20 19 18 22 22 C 1.38807 * 120.00412 * 0.02562 * 20 19 18 23 23 N 1.31625 * 119.99771 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00378 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47117 * 60.00274 * 24 22 20 26 26 H 1.48501 * 109.47324 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47373 * 300.00218 * 24 22 20 28 28 C 1.47586 * 91.01003 * 24.64025 * 19 18 17 29 29 H 1.07999 * 119.99729 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.00166 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47410 * 155.08179 * 3 2 1 32 32 H 1.09002 * 109.46914 * 275.07479 * 3 2 1 33 33 H 1.08995 * 109.47569 * 35.07400 * 3 2 1 34 34 H 1.08994 * 110.37472 * 159.34059 * 7 6 4 35 35 H 1.08997 * 110.36908 * 281.57521 * 7 6 4 36 36 H 1.08999 * 110.55513 * 217.33934 * 8 7 6 37 37 H 1.08999 * 110.61041 * 94.52888 * 8 7 6 38 38 H 0.96995 * 120.00124 * 0.02562 * 13 11 9 39 39 H 1.08995 * 109.47011 * 300.00063 * 16 14 13 40 40 H 1.08997 * 109.46647 * 60.00273 * 16 14 13 41 41 H 1.09002 * 109.46695 * 179.97438 * 16 14 13 42 42 H 1.08999 * 112.93925 * 48.40720 * 17 14 13 43 43 H 1.08998 * 113.76916 * 336.34250 * 18 17 14 44 44 H 1.09001 * 113.77341 * 107.74274 * 18 17 14 45 45 H 0.96995 * 119.99923 * 179.97438 * 23 22 20 46 46 H 1.09009 * 113.76448 * 221.05582 * 28 19 18 47 47 H 1.08994 * 113.87307 * 89.67538 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0635 -1.3051 0.0006 5 1 2.7948 -1.3224 -0.8075 6 8 1.1476 -2.4145 -0.1265 7 6 1.8684 -3.5623 0.3724 8 6 2.6296 -3.0414 1.6156 9 6 2.7608 -1.5230 1.3617 10 1 3.8104 -1.2347 1.3036 11 6 2.0600 -0.7440 2.4448 12 8 0.9364 -1.0513 2.7825 13 7 2.6817 0.2944 3.0379 14 6 2.0002 1.0519 4.0904 15 1 1.3784 0.3774 4.6791 16 6 1.1215 2.1311 3.4544 17 6 3.0397 1.7109 4.9992 18 6 3.5843 0.7780 6.0960 19 7 3.4722 1.9396 6.9994 20 6 4.0898 2.3136 8.1629 21 1 3.8189 3.2420 8.6438 22 6 5.0639 1.4996 8.7244 23 7 5.3936 0.3679 8.1387 24 14 5.9069 2.0101 10.3113 25 1 4.8931 2.1507 11.3872 26 1 6.9004 0.9766 10.6987 27 1 6.5976 3.3090 10.1092 28 6 2.4270 2.5362 6.1451 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 3.0523 1.1537 0.4330 32 1 2.1665 1.6651 -1.0237 33 1 1.5169 2.0403 0.5905 34 1 1.1736 -4.3521 0.6576 35 1 2.5684 -3.9268 -0.3794 36 1 3.6143 -3.5039 1.6830 37 1 2.0557 -3.2287 2.5232 38 1 3.5801 0.5404 2.7675 39 1 1.7432 2.8056 2.8658 40 1 0.3809 1.6616 2.8071 41 1 0.6140 2.6945 4.2376 42 1 3.8155 2.2386 4.4444 43 1 2.9122 -0.0419 6.3491 44 1 4.6102 0.4515 5.9256 45 1 6.0746 -0.2007 8.5308 46 1 2.5289 3.6135 6.0139 47 1 1.4142 2.2341 6.4113 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970572385.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:52 Heat of formation + Delta-G solvation = -32.940527 kcal Electronic energy + Delta-G solvation = -26757.280864 eV Core-core repulsion = 23134.421487 eV Total energy + Delta-G solvation = -3622.859378 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.70442 -40.24109 -39.06246 -36.13361 -35.87871 -34.17560 -33.39443 -31.58557 -29.60484 -29.24806 -28.01771 -26.65146 -25.73691 -24.88264 -23.47883 -22.26756 -21.39033 -20.58855 -19.46665 -18.75757 -18.16448 -17.60394 -16.92705 -16.80287 -16.79229 -16.26964 -15.74734 -15.71461 -15.29250 -14.82370 -14.72112 -14.53466 -14.15307 -14.02871 -13.88450 -13.42967 -13.26390 -13.11050 -13.06963 -12.90881 -12.86357 -12.65762 -12.56605 -12.52893 -12.22364 -12.12247 -12.00151 -11.77262 -11.72548 -11.45783 -11.21928 -10.87206 -10.81863 -10.57402 -9.98449 -9.80153 -8.91950 -7.90552 -5.24238 1.32346 1.45047 1.48492 1.54528 1.74438 2.25886 2.47601 2.89850 3.30162 3.38904 3.45096 3.67173 3.81685 3.88327 4.00166 4.05913 4.21807 4.26663 4.32433 4.34160 4.40020 4.53498 4.60493 4.63978 4.70862 4.75345 4.82553 4.84443 4.87812 4.89489 4.92639 5.02909 5.05774 5.13160 5.15309 5.18705 5.26228 5.37969 5.51877 5.60637 5.66202 5.71505 5.77489 5.94380 6.13085 6.71289 6.92115 7.42251 7.60962 8.57076 9.26048 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.023108 B = 0.003293 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.421542 B = 8501.320817 C = 9259.375263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.148 4.148 3 C -0.110 4.110 4 C 0.129 3.871 5 H 0.112 0.888 6 O -0.388 6.388 7 C 0.046 3.954 8 C -0.141 4.141 9 C -0.136 4.136 10 H 0.134 0.866 11 C 0.527 3.473 12 O -0.575 6.575 13 N -0.709 5.709 14 C 0.164 3.836 15 H 0.051 0.949 16 C -0.147 4.147 17 C -0.106 4.106 18 C 0.169 3.831 19 N -0.644 5.644 20 C -0.239 4.239 21 H 0.084 0.916 22 C -0.066 4.066 23 N -0.954 5.954 24 Si 0.979 3.021 25 H -0.281 1.281 26 H -0.294 1.294 27 H -0.273 1.273 28 C 0.128 3.872 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.111 0.889 37 H 0.056 0.944 38 H 0.411 0.589 39 H 0.077 0.923 40 H 0.047 0.953 41 H 0.067 0.933 42 H 0.107 0.893 43 H -0.002 1.002 44 H 0.043 0.957 45 H 0.248 0.752 46 H 0.064 0.936 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.316 -1.487 -21.379 21.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C -0.167 4.167 4 C 0.071 3.929 5 H 0.130 0.870 6 O -0.307 6.307 7 C -0.030 4.030 8 C -0.179 4.179 9 C -0.158 4.158 10 H 0.152 0.848 11 C 0.314 3.686 12 O -0.454 6.454 13 N -0.360 5.360 14 C 0.059 3.941 15 H 0.069 0.931 16 C -0.205 4.205 17 C -0.125 4.125 18 C 0.043 3.957 19 N -0.370 5.370 20 C -0.367 4.367 21 H 0.101 0.899 22 C -0.259 4.259 23 N -0.603 5.603 24 Si 0.806 3.194 25 H -0.207 1.207 26 H -0.220 1.220 27 H -0.198 1.198 28 C 0.003 3.997 29 H 0.119 0.881 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.130 0.870 37 H 0.075 0.925 38 H 0.247 0.753 39 H 0.096 0.904 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.125 0.875 43 H 0.016 0.984 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.083 0.917 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.121 -1.703 -20.939 21.409 hybrid contribution 0.670 -0.206 1.496 1.652 sum -3.451 -1.909 -19.443 19.839 Atomic orbital electron populations 1.23588 0.96126 1.01306 0.99568 1.21751 0.95715 0.95092 1.02249 1.20828 1.00195 0.92621 1.03032 1.21829 0.90616 0.85810 0.94634 0.87029 1.89126 1.38827 1.18049 1.84740 1.23598 0.96033 0.88980 0.94367 1.23005 1.02933 0.92371 0.99563 1.22831 1.02416 0.96557 0.93972 0.84804 1.20573 0.85988 0.79854 0.82209 1.90680 1.20759 1.68940 1.64993 1.46016 1.19691 1.31971 1.38305 1.20702 0.93046 0.92649 0.87753 0.93110 1.22038 0.99337 0.97978 1.01130 1.23417 0.97697 0.97533 0.93889 1.22132 0.97629 0.89430 0.86500 1.46390 1.42219 1.22332 1.26091 1.19429 1.14334 1.03804 0.99162 0.89858 1.25623 1.00774 0.96959 1.02568 1.70005 1.34877 1.13713 1.41670 0.85155 0.77827 0.77175 0.79196 1.20682 1.22009 1.19827 1.22683 0.91657 0.97611 0.87738 0.88126 0.89715 0.90663 0.89960 0.91724 0.89034 0.89171 0.87017 0.92519 0.75309 0.90403 0.93390 0.91425 0.87451 0.98389 0.93825 0.94304 0.91739 0.94354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.12 13.32 67.78 0.90 -3.22 16 2 C -0.15 -3.05 3.78 -16.49 -0.06 -3.12 16 3 C -0.11 -1.65 9.67 71.23 0.69 -0.97 16 4 C 0.13 2.46 3.53 30.35 0.11 2.57 16 5 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 6 O -0.39 -9.25 9.81 -148.98 -1.46 -10.71 16 7 C 0.05 0.82 7.64 72.60 0.55 1.37 16 8 C -0.14 -2.69 6.63 31.72 0.21 -2.48 16 9 C -0.14 -2.63 3.25 -10.52 -0.03 -2.66 16 10 H 0.13 1.64 8.00 -2.39 -0.02 1.63 16 11 C 0.53 14.28 4.77 87.66 0.42 14.70 16 12 O -0.57 -20.96 15.59 -3.05 -0.05 -21.01 16 13 N -0.71 -17.46 5.08 -442.52 -2.25 -19.71 16 14 C 0.16 4.84 2.42 44.99 0.11 4.95 16 15 H 0.05 1.88 7.37 -2.38 -0.02 1.87 16 16 C -0.15 -3.57 9.25 71.98 0.67 -2.90 16 17 C -0.11 -3.59 3.50 -10.14 -0.04 -3.63 16 18 C 0.17 7.99 7.07 86.48 0.61 8.60 16 19 N -0.64 -33.16 3.70 -716.76 -2.65 -35.81 16 20 C -0.24 -13.53 10.70 84.03 0.90 -12.63 16 21 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 22 C -0.07 -3.80 5.50 84.86 0.47 -3.34 16 23 N -0.95 -57.84 11.38 21.65 0.25 -57.59 16 24 Si 0.98 45.79 29.55 68.60 2.03 47.82 16 25 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 26 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 27 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 28 C 0.13 4.99 7.56 86.48 0.65 5.64 16 29 H 0.10 2.20 8.05 -2.91 -0.02 2.17 16 30 H 0.08 2.43 6.90 -2.91 -0.02 2.41 16 31 H 0.07 0.92 7.95 -2.39 -0.02 0.90 16 32 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.06 1.05 8.07 -2.39 -0.02 1.03 16 34 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.06 1.45 7.37 -2.39 -0.02 1.44 16 38 H 0.41 7.82 8.50 -92.71 -0.79 7.03 16 39 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.07 1.62 7.43 -2.39 -0.02 1.60 16 42 H 0.11 3.28 8.14 -2.39 -0.02 3.27 16 43 H 0.00 -0.09 7.96 -2.39 -0.02 -0.11 16 44 H 0.04 2.29 7.15 -2.39 -0.02 2.27 16 45 H 0.25 14.64 8.31 -92.71 -0.77 13.86 16 46 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 47 H 0.04 1.48 8.06 -2.39 -0.02 1.46 16 Total: -1.00 -76.09 377.24 2.18 -73.91 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: 0.16 Total: 20.19 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 6.16 Total: 2.91 kcal Atomic # 7 Polarization: -108.46 SS G_CDS: -4.65 Total: -113.11 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -1.51 Total: -31.72 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -76.09 2.18 -73.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970572385.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.974 kcal (2) G-P(sol) polarization free energy of solvation -76.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds