Wall clock time and date at job start Fri Apr 10 2020 17:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47498 * 2 1 4 4 N 1.46505 * 109.47094 * 240.00153 * 2 1 3 5 5 C 1.34774 * 120.00272 * 85.00058 * 4 2 1 6 6 O 1.21280 * 119.99356 * 0.02562 * 5 4 2 7 7 C 1.50692 * 120.00190 * 180.02562 * 5 4 2 8 8 H 1.09004 * 115.55774 * 300.07613 * 7 5 4 9 9 C 1.53061 * 117.50762 * 154.36718 * 7 5 4 10 10 C 1.52722 * 117.50664 * 85.78232 * 7 5 4 11 11 C 1.53244 * 117.83466 * 359.60402 * 10 7 5 12 12 C 1.53332 * 108.48643 * 265.32275 * 11 10 7 13 13 O 1.42872 * 109.31589 * 306.01416 * 12 11 10 14 14 C 1.42870 * 114.51546 * 64.36704 * 13 12 11 15 15 C 1.53249 * 117.83676 * 215.32975 * 10 7 5 16 16 C 1.53002 * 109.46973 * 120.00153 * 2 1 3 17 17 C 1.53500 * 114.20667 * 299.99530 * 16 2 1 18 18 N 1.47069 * 87.98566 * 220.14987 * 17 16 2 19 19 C 1.36929 * 136.05547 * 207.08398 * 18 17 16 20 20 H 1.08003 * 120.00389 * 0.02562 * 19 18 17 21 21 C 1.38816 * 119.99932 * 180.27460 * 19 18 17 22 22 N 1.31614 * 119.99736 * 359.72787 * 21 19 18 23 23 Si 1.86802 * 120.00091 * 179.72611 * 21 19 18 24 24 H 1.48507 * 109.46965 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47195 * 120.00414 * 23 21 19 26 26 H 1.48501 * 109.47082 * 240.00646 * 23 21 19 27 27 C 1.47068 * 87.88607 * 27.34331 * 18 17 16 28 28 H 1.09004 * 109.47401 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47227 * 299.99934 * 1 2 3 30 30 H 1.08999 * 109.46953 * 60.00107 * 1 2 3 31 31 H 0.97001 * 119.99722 * 265.00023 * 4 2 1 32 32 H 1.08995 * 117.50616 * 0.02562 * 9 7 5 33 33 H 1.09001 * 117.50582 * 145.07006 * 9 7 5 34 34 H 1.09001 * 109.63422 * 25.02085 * 11 10 7 35 35 H 1.09001 * 109.63961 * 145.62251 * 11 10 7 36 36 H 1.08997 * 109.49619 * 186.06121 * 12 11 10 37 37 H 1.08994 * 109.51983 * 65.98204 * 12 11 10 38 38 H 1.09007 * 109.49712 * 175.67495 * 14 13 12 39 39 H 1.09001 * 109.52452 * 55.59970 * 14 13 12 40 40 H 1.09003 * 109.63759 * 214.37779 * 15 10 7 41 41 H 1.09001 * 109.63292 * 334.77999 * 15 10 7 42 42 H 1.08994 * 113.28088 * 73.06936 * 16 2 1 43 43 H 1.09005 * 113.46077 * 105.36823 * 17 16 2 44 44 H 1.09002 * 113.46605 * 334.93449 * 17 16 2 45 45 H 0.97005 * 119.99885 * 179.97438 * 22 21 19 46 46 H 1.08997 * 113.46557 * 87.43460 * 27 18 17 47 47 H 1.09002 * 113.46857 * 217.87845 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0183 -2.3572 6 8 1.8591 1.1586 -2.4114 7 6 2.6488 -0.7288 -3.5877 8 1 3.6452 -1.1634 -3.5064 9 6 2.2322 -0.1654 -4.9486 10 6 1.6228 -1.4716 -4.4410 11 6 0.1608 -1.4502 -3.9823 12 6 -0.1076 -2.7127 -3.1545 13 8 0.2688 -3.8637 -3.9126 14 6 1.6638 -3.9482 -4.2090 15 6 2.0621 -2.7764 -5.1141 16 6 2.0399 -0.7213 1.2493 17 6 1.5898 -0.0846 2.5715 18 7 2.9375 -0.3491 3.0976 19 6 3.4886 -0.5678 4.3319 20 1 2.8615 -0.5670 5.2112 21 6 4.8542 -0.7854 4.4535 22 7 5.6184 -0.7868 3.3819 23 14 5.6073 -1.0760 6.1381 24 1 4.5423 -1.0248 7.1719 25 1 6.2604 -2.4094 6.1650 26 1 6.6178 -0.0242 6.4168 27 6 3.4336 -0.2689 1.7155 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.2490 -1.6318 -1.1527 32 1 1.5956 0.7193 -4.9536 33 1 2.9543 -0.2300 -5.7625 34 1 -0.0182 -0.5661 -3.3703 35 1 -0.4959 -1.4362 -4.8521 36 1 -1.1683 -2.7689 -2.9102 37 1 0.4762 -2.6760 -2.2348 38 1 1.8710 -4.8889 -4.7194 39 1 2.2365 -3.9033 -3.2826 40 1 1.5669 -2.8750 -6.0801 41 1 3.1428 -2.7698 -5.2555 42 1 1.9086 -1.8025 1.2062 43 1 0.8071 -0.6476 3.0799 44 1 1.3581 0.9770 2.4853 45 1 6.5727 -0.9385 3.4670 46 1 3.6879 0.7441 1.4037 47 1 4.2217 -0.9889 1.4947 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970992894.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:54 Heat of formation + Delta-G solvation = -31.631280 kcal Electronic energy + Delta-G solvation = -26531.752355 eV Core-core repulsion = 22908.949751 eV Total energy + Delta-G solvation = -3622.802604 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.67264 -40.40593 -39.50759 -37.38706 -36.15244 -34.21861 -32.19467 -31.90353 -30.98749 -29.40935 -26.70806 -25.86686 -25.28343 -24.67920 -23.72946 -22.63295 -21.49852 -20.79570 -19.72065 -18.77888 -18.04826 -17.44221 -17.06455 -16.96654 -16.92088 -16.18516 -15.81812 -15.75653 -15.55082 -15.03308 -14.83727 -14.60767 -14.30595 -14.06923 -13.99169 -13.45657 -13.39649 -13.29921 -13.04357 -13.02274 -12.91803 -12.73258 -12.62917 -12.26748 -12.07487 -12.02025 -11.76796 -11.68770 -11.54370 -11.33598 -11.13445 -10.97926 -10.91111 -10.71997 -10.21227 -10.01139 -8.95395 -7.93388 -5.27449 1.44528 1.45896 1.56129 1.56479 2.14937 2.45435 2.67266 2.98867 3.28688 3.38859 3.51463 3.66415 3.67738 3.78543 3.86113 3.94713 4.08290 4.12825 4.27060 4.30969 4.46928 4.52449 4.55463 4.56257 4.66133 4.74440 4.77140 4.79839 4.81780 4.83875 4.86142 4.95165 4.98494 5.05729 5.09611 5.13392 5.22450 5.23006 5.26398 5.33023 5.46236 5.54689 5.64743 5.90389 6.31738 6.58743 6.88140 7.27946 7.57421 8.58166 9.24421 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.019694 B = 0.003177 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.431482 B = 8811.566629 C = 8981.158560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.163 3.837 3 H 0.058 0.942 4 N -0.706 5.706 5 C 0.544 3.456 6 O -0.585 6.585 7 C -0.191 4.191 8 H 0.144 0.856 9 C -0.136 4.136 10 C -0.093 4.093 11 C -0.120 4.120 12 C 0.064 3.936 13 O -0.398 6.398 14 C 0.054 3.946 15 C -0.112 4.112 16 C -0.112 4.112 17 C 0.130 3.870 18 N -0.644 5.644 19 C -0.231 4.231 20 H 0.087 0.913 21 C -0.068 4.068 22 N -0.954 5.954 23 Si 0.981 3.019 24 H -0.263 1.263 25 H -0.289 1.289 26 H -0.295 1.295 27 C 0.160 3.840 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.409 0.591 32 H 0.088 0.912 33 H 0.125 0.875 34 H 0.060 0.940 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.053 0.947 38 H 0.110 0.890 39 H 0.054 0.946 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.106 0.894 43 H 0.061 0.939 44 H 0.041 0.959 45 H 0.248 0.752 46 H 0.002 0.998 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.736 -6.229 -19.118 22.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.057 3.943 3 H 0.076 0.924 4 N -0.356 5.356 5 C 0.332 3.668 6 O -0.465 6.465 7 C -0.212 4.212 8 H 0.161 0.839 9 C -0.173 4.173 10 C -0.093 4.093 11 C -0.158 4.158 12 C -0.012 4.012 13 O -0.317 6.317 14 C -0.022 4.022 15 C -0.149 4.149 16 C -0.131 4.131 17 C 0.004 3.996 18 N -0.369 5.369 19 C -0.359 4.359 20 H 0.105 0.895 21 C -0.261 4.261 22 N -0.603 5.603 23 Si 0.809 3.191 24 H -0.187 1.187 25 H -0.216 1.216 26 H -0.222 1.222 27 C 0.034 3.966 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.245 0.755 32 H 0.106 0.894 33 H 0.143 0.857 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.120 0.880 37 H 0.071 0.929 38 H 0.128 0.872 39 H 0.073 0.927 40 H 0.104 0.896 41 H 0.113 0.887 42 H 0.124 0.876 43 H 0.079 0.921 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.019 0.981 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.841 -5.605 -18.917 22.512 hybrid contribution 1.332 0.347 1.210 1.833 sum -9.510 -5.257 -17.707 20.775 Atomic orbital electron populations 1.22037 0.93235 1.03133 1.02213 1.20738 0.95090 0.95618 0.82806 0.92400 1.45989 1.66349 1.14339 1.08906 1.20058 0.76090 0.86186 0.84500 1.90670 1.52281 1.17795 1.85780 1.22470 1.01910 1.06326 0.90490 0.83867 1.23093 1.03031 0.96550 0.94630 1.21567 0.92920 0.94423 1.00408 1.21828 0.94147 0.98766 1.01014 1.22621 1.01426 0.84136 0.93043 1.87854 1.25576 1.43989 1.74321 1.22797 0.81465 0.99182 0.98753 1.21867 1.02683 0.91145 0.99194 1.23307 0.96706 1.00392 0.92732 1.22478 0.88397 0.97572 0.91135 1.45987 1.05632 1.82381 1.02945 1.19421 0.91690 1.40510 0.84247 0.89508 1.25669 0.96431 1.02858 1.01110 1.70032 1.04337 1.57071 1.28889 0.84977 0.78189 0.76854 0.79115 1.18730 1.21555 1.22177 1.22084 0.94835 0.96042 0.83683 0.90605 0.90907 0.93101 0.75504 0.89356 0.85665 0.92109 0.89799 0.88037 0.92921 0.87161 0.92727 0.89560 0.88707 0.87587 0.92091 0.94173 0.94288 0.98061 0.94259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 9.29 71.98 0.67 -2.85 16 2 C 0.16 4.79 2.48 44.99 0.11 4.90 16 3 H 0.06 2.09 7.34 -2.39 -0.02 2.07 16 4 N -0.71 -17.98 4.96 -442.54 -2.19 -20.17 16 5 C 0.54 14.91 5.81 87.66 0.51 15.42 16 6 O -0.58 -20.94 16.23 -3.03 -0.05 -20.99 16 7 C -0.19 -3.79 5.87 -11.61 -0.07 -3.86 16 8 H 0.14 2.40 8.14 -2.38 -0.02 2.38 16 9 C -0.14 -2.39 9.52 30.55 0.29 -2.10 16 10 C -0.09 -1.48 2.03 -52.17 -0.11 -1.58 16 11 C -0.12 -2.08 5.58 30.79 0.17 -1.91 16 12 C 0.06 1.08 6.85 72.09 0.49 1.57 16 13 O -0.40 -7.25 10.69 -148.98 -1.59 -8.85 16 14 C 0.05 0.73 6.84 72.09 0.49 1.22 16 15 C -0.11 -1.31 5.92 30.79 0.18 -1.13 16 16 C -0.11 -3.84 3.66 -10.37 -0.04 -3.88 16 17 C 0.13 5.06 7.33 83.18 0.61 5.67 16 18 N -0.64 -33.31 3.78 -737.82 -2.79 -36.10 16 19 C -0.23 -13.06 10.75 84.04 0.90 -12.16 16 20 H 0.09 4.67 7.83 -2.91 -0.02 4.65 16 21 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 22 N -0.95 -58.30 11.50 21.65 0.25 -58.05 16 23 Si 0.98 45.86 29.55 68.60 2.03 47.88 16 24 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 25 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 26 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 27 C 0.16 7.63 6.99 83.27 0.58 8.21 16 28 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 29 H 0.07 1.68 7.49 -2.38 -0.02 1.66 16 30 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.41 8.74 8.32 -92.71 -0.77 7.97 16 32 H 0.09 1.90 7.90 -2.39 -0.02 1.88 16 33 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.06 1.28 6.83 -2.39 -0.02 1.27 16 35 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.05 0.88 7.74 -2.39 -0.02 0.87 16 38 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 39 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.09 0.83 8.08 -2.39 -0.02 0.81 16 42 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 43 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 44 H 0.04 1.54 8.10 -2.39 -0.02 1.52 16 45 H 0.25 14.67 8.31 -92.70 -0.77 13.90 16 46 H 0.00 0.08 7.94 -2.39 -0.02 0.07 16 47 H 0.04 2.10 7.12 -2.39 -0.02 2.08 16 Total: -1.00 -73.36 375.02 1.10 -72.26 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.18 Total: 19.93 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 5.27 Total: 4.10 kcal Atomic # 7 Polarization: -109.59 SS G_CDS: -4.73 Total: -114.32 kcal Atomic # 8 Polarization: -28.19 SS G_CDS: -1.64 Total: -29.84 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.88 kcal Total: -73.36 1.10 -72.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970992894.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.625 kcal (2) G-P(sol) polarization free energy of solvation -73.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds