Wall clock time and date at job start Fri Apr 10 2020 17:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47038 * 2 1 4 4 N 1.46493 * 109.47280 * 120.00360 * 2 1 3 5 5 C 1.34771 * 120.00256 * 274.99867 * 4 2 1 6 6 O 1.21288 * 119.99876 * 0.02562 * 5 4 2 7 7 C 1.50702 * 120.00465 * 179.97438 * 5 4 2 8 8 H 1.08998 * 115.54813 * 59.92591 * 7 5 4 9 9 C 1.53054 * 117.51009 * 205.63021 * 7 5 4 10 10 C 1.52719 * 117.50794 * 274.21761 * 7 5 4 11 11 C 1.53256 * 117.83038 * 144.66966 * 10 7 5 12 12 C 1.53331 * 108.48090 * 265.32096 * 11 10 7 13 13 O 1.42863 * 109.32221 * 306.01866 * 12 11 10 14 14 C 1.42869 * 114.52106 * 64.36515 * 13 12 11 15 15 C 1.53240 * 117.83550 * 0.39805 * 10 7 5 16 16 C 1.53005 * 109.46906 * 240.00682 * 2 1 3 17 17 C 1.53494 * 114.20993 * 59.99599 * 16 2 1 18 18 N 1.47067 * 87.98235 * 87.52083 * 17 16 2 19 19 C 1.36933 * 136.05519 * 207.08206 * 18 17 16 20 20 H 1.08003 * 120.00323 * 0.28019 * 19 18 17 21 21 C 1.38817 * 119.99999 * 180.02562 * 19 18 17 22 22 N 1.31618 * 119.99840 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00143 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46949 * 59.99892 * 23 21 19 25 25 H 1.48503 * 109.47069 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47020 * 300.00055 * 23 21 19 27 27 C 1.47065 * 87.88723 * 27.34362 * 18 17 16 28 28 H 1.09000 * 109.47363 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47073 * 299.99807 * 1 2 3 30 30 H 1.09007 * 109.47398 * 59.99691 * 1 2 3 31 31 H 0.97003 * 119.99737 * 94.99975 * 4 2 1 32 32 H 1.08996 * 117.50753 * 214.93917 * 9 7 5 33 33 H 1.09003 * 117.50330 * 0.02562 * 9 7 5 34 34 H 1.09000 * 109.63332 * 25.01594 * 11 10 7 35 35 H 1.08998 * 109.63310 * 145.62142 * 11 10 7 36 36 H 1.08997 * 109.49325 * 186.06441 * 12 11 10 37 37 H 1.08998 * 109.49593 * 65.97498 * 12 11 10 38 38 H 1.09001 * 109.50002 * 175.67824 * 14 13 12 39 39 H 1.09009 * 109.49098 * 55.58722 * 14 13 12 40 40 H 1.09004 * 109.63390 * 214.37174 * 15 10 7 41 41 H 1.09003 * 109.63324 * 334.77331 * 15 10 7 42 42 H 1.09003 * 113.27564 * 286.93058 * 16 2 1 43 43 H 1.08998 * 113.46853 * 332.74059 * 17 16 2 44 44 H 1.08997 * 113.51862 * 202.30913 * 17 16 2 45 45 H 0.97002 * 120.00163 * 180.02562 * 22 21 19 46 46 H 1.08997 * 113.46660 * 87.43193 * 27 18 17 47 47 H 1.09004 * 113.46819 * 217.87924 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0184 2.3570 6 8 1.8582 1.1583 2.4117 7 6 2.6490 -0.7290 3.5876 8 1 3.6453 -1.1635 3.5061 9 6 2.2325 -0.1658 4.9485 10 6 1.6231 -1.4719 4.4409 11 6 2.0625 -2.7767 5.1138 12 6 1.6643 -3.9485 4.2087 13 8 0.2693 -3.8641 3.9124 14 6 -0.1073 -2.7130 3.1545 15 6 0.1610 -1.4506 3.9822 16 6 2.0400 -0.7211 -1.2494 17 6 1.5897 -0.0845 -2.5715 18 7 2.7722 0.7866 -2.4946 19 6 3.1103 2.0325 -2.9511 20 1 2.3981 2.6105 -3.5213 21 6 4.3668 2.5550 -2.6766 22 7 5.2329 1.8530 -1.9770 23 14 4.8278 4.2549 -3.2987 24 1 3.8905 5.2593 -2.7349 25 1 6.2136 4.5784 -2.8740 26 1 4.7456 4.2785 -4.7812 27 6 3.4340 -0.2720 -1.7173 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 2.2491 -1.6318 1.1524 32 1 2.9546 -0.2302 5.7623 33 1 1.5952 0.7185 4.9536 34 1 3.1437 -2.7716 5.2519 35 1 1.5675 -2.8754 6.0799 36 1 1.8715 -4.8891 4.7190 37 1 2.2364 -3.9032 3.2821 38 1 -1.1681 -2.7693 2.9102 39 1 0.4768 -2.6760 2.2349 40 1 -0.4956 -1.4367 4.8522 41 1 -0.0189 -0.5646 3.3733 42 1 1.9086 -1.8024 -1.2064 43 1 0.6465 0.4562 -2.4939 44 1 1.6122 -0.7733 -3.4159 45 1 6.1107 2.2181 -1.7848 46 1 3.9431 -1.0110 -2.3360 47 1 4.0620 0.1089 -0.9119 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970992895.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:57 Heat of formation + Delta-G solvation = -6.511669 kcal Electronic energy + Delta-G solvation = -26905.323984 eV Core-core repulsion = 23283.610648 eV Total energy + Delta-G solvation = -3621.713336 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.63555 -39.13930 -38.16879 -36.42915 -34.54445 -32.16128 -31.49111 -30.56902 -29.98146 -27.59642 -25.27464 -24.28592 -23.96837 -23.65511 -22.90613 -21.46048 -20.25846 -19.26899 -18.39100 -16.89596 -16.70520 -16.45157 -16.24920 -15.92815 -15.17657 -15.02506 -14.82411 -14.37947 -14.01285 -13.80430 -13.55607 -13.33934 -13.19753 -12.95511 -12.63733 -12.52788 -12.17108 -11.98751 -11.78044 -11.58164 -11.35752 -11.23954 -10.95048 -10.88505 -10.79562 -10.69103 -10.58032 -10.32098 -10.18688 -9.88703 -9.76278 -9.60367 -9.37193 -9.17562 -8.80280 -8.64722 -6.84762 -5.73259 -3.05387 2.77963 3.34302 3.42984 3.46915 3.47957 3.58369 3.65834 4.34709 4.48270 4.49631 4.57044 4.67956 4.76654 4.95581 5.05781 5.21554 5.23543 5.28571 5.34423 5.36240 5.37429 5.43679 5.46210 5.56724 5.63515 5.65403 5.77400 5.80900 5.87925 5.91285 5.94358 6.03265 6.05844 6.12530 6.30500 6.46324 6.55165 6.65516 6.76303 6.92346 6.99115 7.21204 7.33175 7.58716 7.83851 8.01297 8.55662 9.06979 9.74280 10.67250 11.44141 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.020576 B = 0.003675 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.468000 B = 7616.762915 C = 8159.198735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.171 3.829 3 H 0.102 0.898 4 N -0.714 5.714 5 C 0.544 3.456 6 O -0.535 6.535 7 C -0.178 4.178 8 H 0.127 0.873 9 C -0.136 4.136 10 C -0.109 4.109 11 C -0.117 4.117 12 C 0.062 3.938 13 O -0.384 6.384 14 C 0.065 3.935 15 C -0.121 4.121 16 C -0.155 4.155 17 C 0.126 3.874 18 N -0.607 5.607 19 C -0.219 4.219 20 H 0.080 0.920 21 C -0.006 4.006 22 N -0.919 5.919 23 Si 0.911 3.089 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.286 1.286 27 C 0.159 3.841 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.393 0.607 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.053 0.947 38 H 0.094 0.906 39 H 0.054 0.946 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.068 0.932 43 H 0.043 0.957 44 H 0.033 0.967 45 H 0.253 0.747 46 H 0.023 0.977 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.390 -13.151 13.974 20.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.067 3.933 3 H 0.120 0.880 4 N -0.363 5.363 5 C 0.329 3.671 6 O -0.412 6.412 7 C -0.199 4.199 8 H 0.144 0.856 9 C -0.174 4.174 10 C -0.109 4.109 11 C -0.154 4.154 12 C -0.015 4.015 13 O -0.302 6.302 14 C -0.012 4.012 15 C -0.159 4.159 16 C -0.175 4.175 17 C -0.001 4.001 18 N -0.333 5.333 19 C -0.346 4.346 20 H 0.098 0.902 21 C -0.203 4.203 22 N -0.566 5.566 23 Si 0.741 3.259 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.212 1.212 27 C 0.033 3.967 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.226 0.774 32 H 0.120 0.880 33 H 0.124 0.876 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.071 0.929 38 H 0.112 0.888 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.061 0.939 44 H 0.051 0.949 45 H 0.063 0.937 46 H 0.041 0.959 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.507 -12.109 13.999 20.371 hybrid contribution 0.940 0.640 -0.669 1.320 sum -7.567 -11.469 13.330 19.144 Atomic orbital electron populations 1.22129 0.96080 1.01081 1.02186 1.20598 0.92643 0.98321 0.81737 0.87960 1.46025 1.67031 1.13513 1.09761 1.19460 0.77313 0.86657 0.83628 1.90723 1.49826 1.15713 1.84930 1.22463 1.00559 1.05107 0.91787 0.85554 1.23017 1.02769 0.96762 0.94815 1.21490 0.93717 0.93762 1.01953 1.21848 1.01482 0.92756 0.99352 1.22599 0.82459 0.98119 0.98297 1.87861 1.24272 1.43822 1.74265 1.22599 1.00851 0.84457 0.93292 1.21848 0.93652 0.99371 1.01013 1.23318 1.02086 0.97392 0.94713 1.22411 0.92582 0.92137 0.92973 1.45597 1.12067 1.12478 1.63207 1.18868 0.97969 0.89033 1.28749 0.90245 1.24765 0.96239 0.98569 1.00684 1.69806 1.06716 1.37161 1.42934 0.86216 0.77477 0.83896 0.78294 1.21002 1.21571 1.21222 1.22151 0.91408 0.88652 0.94439 0.93194 0.92894 0.91331 0.77352 0.87971 0.87599 0.90453 0.90293 0.88819 0.92892 0.88788 0.92731 0.90394 0.90281 0.91427 0.93857 0.94903 0.93690 0.95917 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.29 37.16 0.35 -1.96 16 2 C 0.17 2.97 2.43 -67.93 -0.16 2.80 16 3 H 0.10 2.36 7.36 -51.93 -0.38 1.98 16 4 N -0.71 -10.43 4.96 -53.81 -0.27 -10.70 16 5 C 0.54 8.63 5.81 -10.99 -0.06 8.56 16 6 O -0.54 -10.96 16.23 5.55 0.09 -10.87 16 7 C -0.18 -2.11 5.87 -91.89 -0.54 -2.65 16 8 H 0.13 1.33 8.14 -51.93 -0.42 0.91 16 9 C -0.14 -1.47 9.52 -26.80 -0.26 -1.73 16 10 C -0.11 -1.06 2.03 -154.50 -0.31 -1.37 16 11 C -0.12 -0.91 5.92 -26.43 -0.16 -1.06 16 12 C 0.06 0.50 6.84 37.33 0.26 0.75 16 13 O -0.38 -3.93 10.69 -35.23 -0.38 -4.30 16 14 C 0.06 0.62 6.84 37.33 0.26 0.87 16 15 C -0.12 -1.23 5.58 -26.44 -0.15 -1.38 16 16 C -0.16 -2.75 3.73 -89.97 -0.34 -3.08 16 17 C 0.13 2.51 8.08 -8.50 -0.07 2.45 16 18 N -0.61 -15.56 3.58 -184.59 -0.66 -16.22 16 19 C -0.22 -6.24 10.75 -15.06 -0.16 -6.40 16 20 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 21 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 22 N -0.92 -27.80 11.50 55.49 0.64 -27.16 16 23 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 24 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 27 C 0.16 3.69 6.95 -8.37 -0.06 3.64 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.07 1.03 6.50 -51.93 -0.34 0.70 16 31 H 0.39 4.68 8.32 -40.82 -0.34 4.34 16 32 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.11 1.31 7.90 -51.93 -0.41 0.90 16 34 H 0.08 0.51 8.08 -51.93 -0.42 0.09 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.52 7.74 -51.92 -0.40 0.12 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 0.95 6.84 -51.93 -0.36 0.60 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.04 0.82 6.43 -51.93 -0.33 0.49 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.07 1.91 7.09 -51.93 -0.37 1.54 16 LS Contribution 373.09 15.07 5.62 5.62 Total: -1.00 -33.81 373.09 -9.45 -43.26 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -7.97 Total: 3.50 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -1.50 Total: -0.83 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: -0.29 Total: -54.08 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.29 Total: -15.18 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.81 -9.45 -43.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970992895.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.743 kcal (2) G-P(sol) polarization free energy of solvation -33.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds