Wall clock time and date at job start Fri Apr 10 2020 17:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47038 * 2 1 4 4 N 1.46493 * 109.47280 * 120.00360 * 2 1 3 5 5 C 1.34771 * 120.00256 * 274.99867 * 4 2 1 6 6 O 1.21288 * 119.99876 * 0.02562 * 5 4 2 7 7 C 1.50702 * 120.00465 * 179.97438 * 5 4 2 8 8 H 1.08998 * 115.54813 * 59.92591 * 7 5 4 9 9 C 1.53054 * 117.51009 * 205.63021 * 7 5 4 10 10 C 1.52719 * 117.50794 * 274.21761 * 7 5 4 11 11 C 1.53256 * 117.83038 * 144.66966 * 10 7 5 12 12 C 1.53331 * 108.48090 * 265.32096 * 11 10 7 13 13 O 1.42863 * 109.32221 * 306.01866 * 12 11 10 14 14 C 1.42869 * 114.52106 * 64.36515 * 13 12 11 15 15 C 1.53240 * 117.83550 * 0.39805 * 10 7 5 16 16 C 1.53005 * 109.46906 * 240.00682 * 2 1 3 17 17 C 1.53494 * 114.20993 * 59.99599 * 16 2 1 18 18 N 1.47067 * 87.98235 * 87.52083 * 17 16 2 19 19 C 1.36933 * 136.05519 * 207.08206 * 18 17 16 20 20 H 1.08003 * 120.00323 * 0.28019 * 19 18 17 21 21 C 1.38817 * 119.99999 * 180.02562 * 19 18 17 22 22 N 1.31618 * 119.99840 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00143 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46949 * 59.99892 * 23 21 19 25 25 H 1.48503 * 109.47069 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47020 * 300.00055 * 23 21 19 27 27 C 1.47065 * 87.88723 * 27.34362 * 18 17 16 28 28 H 1.09000 * 109.47363 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47073 * 299.99807 * 1 2 3 30 30 H 1.09007 * 109.47398 * 59.99691 * 1 2 3 31 31 H 0.97003 * 119.99737 * 94.99975 * 4 2 1 32 32 H 1.08996 * 117.50753 * 214.93917 * 9 7 5 33 33 H 1.09003 * 117.50330 * 0.02562 * 9 7 5 34 34 H 1.09000 * 109.63332 * 25.01594 * 11 10 7 35 35 H 1.08998 * 109.63310 * 145.62142 * 11 10 7 36 36 H 1.08997 * 109.49325 * 186.06441 * 12 11 10 37 37 H 1.08998 * 109.49593 * 65.97498 * 12 11 10 38 38 H 1.09001 * 109.50002 * 175.67824 * 14 13 12 39 39 H 1.09009 * 109.49098 * 55.58722 * 14 13 12 40 40 H 1.09004 * 109.63390 * 214.37174 * 15 10 7 41 41 H 1.09003 * 109.63324 * 334.77331 * 15 10 7 42 42 H 1.09003 * 113.27564 * 286.93058 * 16 2 1 43 43 H 1.08998 * 113.46853 * 332.74059 * 17 16 2 44 44 H 1.08997 * 113.51862 * 202.30913 * 17 16 2 45 45 H 0.97002 * 120.00163 * 180.02562 * 22 21 19 46 46 H 1.08997 * 113.46660 * 87.43193 * 27 18 17 47 47 H 1.09004 * 113.46819 * 217.87924 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0184 2.3570 6 8 1.8582 1.1583 2.4117 7 6 2.6490 -0.7290 3.5876 8 1 3.6453 -1.1635 3.5061 9 6 2.2325 -0.1658 4.9485 10 6 1.6231 -1.4719 4.4409 11 6 2.0625 -2.7767 5.1138 12 6 1.6643 -3.9485 4.2087 13 8 0.2693 -3.8641 3.9124 14 6 -0.1073 -2.7130 3.1545 15 6 0.1610 -1.4506 3.9822 16 6 2.0400 -0.7211 -1.2494 17 6 1.5897 -0.0845 -2.5715 18 7 2.7722 0.7866 -2.4946 19 6 3.1103 2.0325 -2.9511 20 1 2.3981 2.6105 -3.5213 21 6 4.3668 2.5550 -2.6766 22 7 5.2329 1.8530 -1.9770 23 14 4.8278 4.2549 -3.2987 24 1 3.8905 5.2593 -2.7349 25 1 6.2136 4.5784 -2.8740 26 1 4.7456 4.2785 -4.7812 27 6 3.4340 -0.2720 -1.7173 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 2.2491 -1.6318 1.1524 32 1 2.9546 -0.2302 5.7623 33 1 1.5952 0.7185 4.9536 34 1 3.1437 -2.7716 5.2519 35 1 1.5675 -2.8754 6.0799 36 1 1.8715 -4.8891 4.7190 37 1 2.2364 -3.9032 3.2821 38 1 -1.1681 -2.7693 2.9102 39 1 0.4768 -2.6760 2.2349 40 1 -0.4956 -1.4367 4.8522 41 1 -0.0189 -0.5646 3.3733 42 1 1.9086 -1.8024 -1.2064 43 1 0.6465 0.4562 -2.4939 44 1 1.6122 -0.7733 -3.4159 45 1 6.1107 2.2181 -1.7848 46 1 3.9431 -1.0110 -2.3360 47 1 4.0620 0.1089 -0.9119 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970992895.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:56 Heat of formation + Delta-G solvation = -29.673239 kcal Electronic energy + Delta-G solvation = -26906.328345 eV Core-core repulsion = 23283.610648 eV Total energy + Delta-G solvation = -3622.717697 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.67972 -40.44965 -39.48760 -37.36115 -36.03557 -34.20337 -32.17535 -31.80143 -30.96040 -29.50041 -26.72148 -25.78399 -25.25626 -24.67264 -23.74776 -22.97563 -21.43931 -20.52277 -19.62984 -18.71959 -17.98081 -17.52730 -17.07379 -16.93646 -16.90576 -16.21928 -15.81664 -15.75280 -15.55123 -15.14980 -14.65289 -14.56382 -14.33268 -14.30180 -14.00392 -13.46901 -13.41556 -13.25971 -13.21308 -12.97237 -12.80780 -12.59901 -12.36986 -12.26213 -12.11123 -11.99162 -11.80013 -11.67453 -11.51934 -11.33500 -11.14703 -10.95553 -10.88281 -10.70670 -10.21387 -10.00398 -8.90050 -7.92090 -5.23397 1.40370 1.44638 1.49850 1.58431 2.16624 2.45601 2.65399 3.00169 3.30211 3.47103 3.53622 3.65213 3.66199 3.77660 3.86051 3.89749 4.09095 4.12451 4.30708 4.41689 4.50447 4.51524 4.57504 4.66137 4.68939 4.75558 4.78515 4.80507 4.83158 4.83816 4.85944 4.94908 5.00082 5.04265 5.14074 5.21414 5.22949 5.23798 5.27168 5.30504 5.50470 5.55125 5.72062 5.95121 6.33277 6.62975 6.90310 7.34019 7.60418 8.61442 9.25314 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.020576 B = 0.003675 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.468000 B = 7616.762915 C = 8159.198735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.178 3.822 3 H 0.037 0.963 4 N -0.701 5.701 5 C 0.540 3.460 6 O -0.591 6.591 7 C -0.189 4.189 8 H 0.145 0.855 9 C -0.142 4.142 10 C -0.086 4.086 11 C -0.112 4.112 12 C 0.055 3.945 13 O -0.397 6.397 14 C 0.067 3.933 15 C -0.122 4.122 16 C -0.119 4.119 17 C 0.125 3.875 18 N -0.642 5.642 19 C -0.227 4.227 20 H 0.083 0.917 21 C -0.068 4.068 22 N -0.952 5.952 23 Si 0.974 3.026 24 H -0.281 1.281 25 H -0.294 1.294 26 H -0.273 1.273 27 C 0.154 3.846 28 H 0.086 0.914 29 H 0.041 0.959 30 H 0.065 0.935 31 H 0.411 0.589 32 H 0.126 0.874 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.113 0.887 37 H 0.058 0.942 38 H 0.102 0.898 39 H 0.056 0.944 40 H 0.083 0.917 41 H 0.055 0.945 42 H 0.118 0.882 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.245 0.755 46 H 0.020 0.980 47 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.435 -15.645 14.487 23.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.073 3.927 3 H 0.055 0.945 4 N -0.351 5.351 5 C 0.327 3.673 6 O -0.472 6.472 7 C -0.209 4.209 8 H 0.163 0.837 9 C -0.180 4.180 10 C -0.087 4.087 11 C -0.149 4.149 12 C -0.021 4.021 13 O -0.316 6.316 14 C -0.010 4.010 15 C -0.160 4.160 16 C -0.138 4.138 17 C 0.000 4.000 18 N -0.368 5.368 19 C -0.355 4.355 20 H 0.100 0.900 21 C -0.261 4.261 22 N -0.601 5.601 23 Si 0.802 3.198 24 H -0.207 1.207 25 H -0.221 1.221 26 H -0.199 1.199 27 C 0.028 3.972 28 H 0.105 0.895 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.247 0.753 32 H 0.144 0.856 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.131 0.869 37 H 0.076 0.924 38 H 0.120 0.880 39 H 0.074 0.926 40 H 0.101 0.899 41 H 0.074 0.926 42 H 0.136 0.864 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.054 0.946 46 H 0.038 0.962 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -9.584 -14.664 14.496 22.738 hybrid contribution 1.213 1.396 -0.819 2.023 sum -8.370 -13.268 13.676 20.812 Atomic orbital electron populations 1.22011 0.93523 1.03224 1.01542 1.20284 0.94437 0.95199 0.82807 0.94461 1.45857 1.66427 1.14140 1.08714 1.20171 0.76156 0.86112 0.84816 1.90695 1.52310 1.18328 1.85859 1.22440 1.01972 1.06306 0.90210 0.83718 1.23095 1.03236 0.96771 0.94853 1.21574 0.92822 0.94321 0.99970 1.21891 1.02709 0.91027 0.99277 1.22811 0.81461 0.99002 0.98818 1.87853 1.25638 1.43753 1.74336 1.22595 1.01509 0.83844 0.93016 1.21842 0.94132 0.98944 1.01077 1.23086 0.97144 0.99966 0.93652 1.22636 0.91170 0.91586 0.94647 1.45943 1.14640 1.12661 1.63588 1.19272 0.97943 0.90721 1.27594 0.89965 1.25585 0.96575 1.02279 1.01690 1.70003 1.06670 1.38685 1.44762 0.85222 0.76641 0.79697 0.78263 1.20698 1.22055 1.19863 1.22142 0.93650 0.88168 0.93217 0.89493 0.93970 0.91630 0.75279 0.85579 0.89897 0.88662 0.89550 0.86926 0.92356 0.87951 0.92606 0.89871 0.92640 0.86377 0.92743 0.92728 0.94570 0.96195 0.95002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.07 9.29 71.98 0.67 -3.40 16 2 C 0.18 6.14 2.43 44.99 0.11 6.25 16 3 H 0.04 1.81 7.36 -2.39 -0.02 1.79 16 4 N -0.70 -20.10 4.96 -442.54 -2.19 -22.30 16 5 C 0.54 17.45 5.81 87.66 0.51 17.95 16 6 O -0.59 -25.66 16.23 -3.05 -0.05 -25.71 16 7 C -0.19 -4.30 5.87 -11.61 -0.07 -4.37 16 8 H 0.15 2.77 8.14 -2.39 -0.02 2.75 16 9 C -0.14 -2.97 9.52 30.55 0.29 -2.68 16 10 C -0.09 -1.52 2.03 -52.17 -0.11 -1.63 16 11 C -0.11 -1.36 5.92 30.79 0.18 -1.17 16 12 C 0.06 0.69 6.84 72.09 0.49 1.18 16 13 O -0.40 -6.92 10.69 -148.98 -1.59 -8.52 16 14 C 0.07 1.12 6.84 72.09 0.49 1.61 16 15 C -0.12 -2.32 5.58 30.78 0.17 -2.15 16 16 C -0.12 -4.00 3.73 -10.37 -0.04 -4.04 16 17 C 0.12 4.78 8.08 83.18 0.67 5.45 16 18 N -0.64 -33.28 3.58 -737.92 -2.64 -35.92 16 19 C -0.23 -13.20 10.75 84.04 0.90 -12.30 16 20 H 0.08 4.57 7.83 -2.91 -0.02 4.55 16 21 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 22 N -0.95 -59.88 11.50 21.65 0.25 -59.63 16 23 Si 0.97 47.95 29.55 68.60 2.03 49.98 16 24 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 25 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 26 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 27 C 0.15 7.23 6.95 83.27 0.58 7.81 16 28 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.06 1.88 6.50 -2.38 -0.02 1.86 16 31 H 0.41 8.86 8.32 -92.71 -0.77 8.09 16 32 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.08 2.13 7.90 -2.39 -0.02 2.12 16 34 H 0.09 0.87 8.08 -2.39 -0.02 0.85 16 35 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.06 0.90 7.74 -2.38 -0.02 0.88 16 40 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 41 H 0.05 1.33 6.84 -2.39 -0.02 1.32 16 42 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 43 H 0.05 1.97 6.43 -2.39 -0.02 1.95 16 44 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 46 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.03 1.74 7.09 -2.39 -0.02 1.72 16 Total: -1.00 -78.71 373.09 1.31 -77.40 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 0.18 Total: 19.78 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: 5.33 Total: 4.91 kcal Atomic # 7 Polarization: -113.26 SS G_CDS: -4.59 Total: -117.85 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -1.64 Total: -34.22 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 2.03 Total: 49.98 kcal Total: -78.71 1.31 -77.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970992895.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.726 kcal (2) G-P(sol) polarization free energy of solvation -78.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds