Wall clock time and date at job start Fri Apr 10 2020 17:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47309 * 2 1 4 4 N 1.46503 * 109.47311 * 239.99854 * 2 1 3 5 5 C 1.34777 * 119.99240 * 84.99673 * 4 2 1 6 6 O 1.21275 * 120.00721 * 0.02562 * 5 4 2 7 7 C 1.50704 * 119.99406 * 180.02562 * 5 4 2 8 8 H 1.09001 * 115.56844 * 325.72583 * 7 5 4 9 9 C 1.53060 * 117.50755 * 111.45385 * 7 5 4 10 10 C 1.52715 * 117.50405 * 180.02562 * 7 5 4 11 11 C 1.53244 * 117.84434 * 0.33785 * 10 7 5 12 12 C 1.53315 * 108.47732 * 196.12669 * 11 10 7 13 13 O 1.42880 * 109.31133 * 306.03429 * 12 11 10 14 14 C 1.42874 * 114.51086 * 64.41994 * 13 12 11 15 15 C 1.53257 * 117.83037 * 144.72336 * 10 7 5 16 16 C 1.53004 * 109.47359 * 120.00106 * 2 1 3 17 17 C 1.53941 * 113.74392 * 281.82394 * 16 2 1 18 18 N 1.47809 * 86.03944 * 222.08273 * 17 16 2 19 19 C 1.36937 * 134.46074 * 204.64865 * 18 17 16 20 20 H 1.07998 * 120.00181 * 179.86218 * 19 18 17 21 21 C 1.38813 * 119.99485 * 359.85884 * 19 18 17 22 22 N 1.31613 * 120.00251 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99751 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47254 * 60.00016 * 23 21 19 25 25 H 1.48494 * 109.47213 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47088 * 300.00089 * 23 21 19 27 27 C 1.47583 * 91.04999 * 24.54416 * 18 17 16 28 28 H 1.08999 * 109.47476 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46741 * 300.06120 * 1 2 3 30 30 H 1.08994 * 109.47245 * 60.06389 * 1 2 3 31 31 H 0.96991 * 120.00353 * 265.00521 * 4 2 1 32 32 H 1.09003 * 117.50903 * 0.02562 * 9 7 5 33 33 H 1.09001 * 117.53821 * 214.92276 * 9 7 5 34 34 H 1.09001 * 109.63301 * 315.81821 * 11 10 7 35 35 H 1.08991 * 109.63594 * 76.42563 * 11 10 7 36 36 H 1.09004 * 109.49765 * 186.08188 * 12 11 10 37 37 H 1.08998 * 109.50504 * 65.98492 * 12 11 10 38 38 H 1.09002 * 109.49515 * 175.63786 * 14 13 12 39 39 H 1.08998 * 109.49837 * 55.54074 * 14 13 12 40 40 H 1.08994 * 109.63812 * 283.57086 * 15 10 7 41 41 H 1.09001 * 109.63179 * 43.97596 * 15 10 7 42 42 H 1.09009 * 112.94433 * 53.41249 * 16 2 1 43 43 H 1.09000 * 113.76659 * 336.34939 * 17 16 2 44 44 H 1.08999 * 113.77127 * 107.74485 * 17 16 2 45 45 H 0.97001 * 119.99987 * 180.02562 * 22 21 19 46 46 H 1.08997 * 113.77395 * 221.15160 * 27 18 17 47 47 H 1.09003 * 113.87058 * 89.77052 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3571 6 8 1.8589 1.1586 -2.4115 7 6 2.6488 -0.7287 -3.5877 8 1 3.3923 -1.5062 -3.4117 9 6 1.6566 -0.9456 -4.7328 10 6 2.7731 0.0879 -4.8722 11 6 2.3876 1.5701 -4.8182 12 6 2.1994 2.0758 -6.2532 13 8 3.3734 1.7858 -7.0142 14 6 3.6408 0.3926 -7.1837 15 6 3.9351 -0.2372 -5.8171 16 6 2.0400 -0.7213 1.2492 17 6 1.9745 0.1328 2.5283 18 7 3.3098 -0.4179 2.8417 19 6 4.0195 -0.6146 3.9962 20 1 5.0067 -1.0507 3.9556 21 6 3.4698 -0.2534 5.2186 22 7 2.2666 0.2776 5.2681 23 14 4.4381 -0.5210 6.7936 24 1 5.7079 0.2463 6.7304 25 1 3.6359 -0.0549 7.9530 26 1 4.7404 -1.9666 6.9492 27 6 3.5701 -0.6731 1.4115 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5148 0.8895 30 1 -0.3633 0.5128 -0.8905 31 1 2.2490 -1.6317 -1.1527 32 1 0.6410 -0.5740 -4.5962 33 1 1.7471 -1.8655 -5.3106 34 1 1.4563 1.6863 -4.2638 35 1 3.1806 2.1372 -4.3309 36 1 2.0309 3.1526 -6.2403 37 1 1.3412 1.5782 -6.7048 38 1 4.5042 0.2647 -7.8367 39 1 2.7724 -0.0930 -7.6287 40 1 4.8604 0.1754 -5.4152 41 1 4.0309 -1.3180 -5.9214 42 1 1.6176 -1.7194 1.3659 43 1 1.9751 1.2064 2.3401 44 1 1.1955 -0.1778 3.2246 45 1 1.8827 0.5303 6.1223 46 1 4.0627 -1.6259 1.2178 47 1 4.0408 0.1622 0.8930 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970992896.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:59 Heat of formation + Delta-G solvation = -9.246977 kcal Electronic energy + Delta-G solvation = -25849.385436 eV Core-core repulsion = 22227.553488 eV Total energy + Delta-G solvation = -3621.831948 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.69945 -39.18995 -38.05965 -36.43625 -34.73067 -32.19126 -31.41203 -30.91774 -29.92651 -27.48187 -25.14331 -24.42806 -23.94742 -23.68672 -23.40154 -21.08826 -20.20018 -19.32229 -18.83706 -17.08565 -16.83136 -16.41287 -16.18614 -15.74109 -15.18860 -15.09130 -14.77803 -14.45084 -14.11627 -13.89957 -13.71892 -13.54006 -13.24658 -13.09491 -12.53786 -12.41673 -12.20381 -12.05212 -11.62199 -11.54855 -11.42136 -11.34237 -11.20385 -10.93722 -10.87170 -10.68457 -10.60998 -10.36390 -10.13243 -9.97917 -9.81613 -9.69354 -9.44148 -9.18000 -8.82708 -8.77777 -6.87476 -5.76577 -3.08702 2.52715 3.19880 3.39527 3.43558 3.44925 3.58208 3.66883 4.32175 4.41556 4.45409 4.55848 4.63901 4.81561 4.89641 5.00405 5.12323 5.17278 5.20119 5.21556 5.36850 5.40294 5.40570 5.46787 5.50863 5.54759 5.64326 5.68258 5.72334 5.82028 5.90343 5.99976 6.06108 6.07986 6.26319 6.33121 6.36085 6.44454 6.60885 6.64358 6.82730 7.01644 7.22250 7.36331 7.55597 7.67960 7.98409 8.37590 9.04873 9.71129 10.60485 11.40665 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.029777 B = 0.002538 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.091059 B =11031.734454 C =11329.145099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.150 3.850 3 H 0.087 0.913 4 N -0.714 5.714 5 C 0.541 3.459 6 O -0.539 6.539 7 C -0.181 4.181 8 H 0.122 0.878 9 C -0.146 4.146 10 C -0.092 4.092 11 C -0.112 4.112 12 C 0.060 3.940 13 O -0.386 6.386 14 C 0.066 3.934 15 C -0.120 4.120 16 C -0.147 4.147 17 C 0.176 3.824 18 N -0.612 5.612 19 C -0.224 4.224 20 H 0.078 0.922 21 C -0.008 4.008 22 N -0.922 5.922 23 Si 0.912 3.088 24 H -0.285 1.285 25 H -0.289 1.289 26 H -0.284 1.284 27 C 0.126 3.874 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.398 0.602 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.047 0.953 38 H 0.093 0.907 39 H 0.050 0.950 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.028 0.972 44 H 0.075 0.925 45 H 0.254 0.746 46 H 0.040 0.960 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.572 -3.717 -24.308 24.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.046 3.954 3 H 0.105 0.895 4 N -0.364 5.364 5 C 0.327 3.673 6 O -0.417 6.417 7 C -0.203 4.203 8 H 0.140 0.860 9 C -0.183 4.183 10 C -0.093 4.093 11 C -0.150 4.150 12 C -0.017 4.017 13 O -0.305 6.305 14 C -0.010 4.010 15 C -0.157 4.157 16 C -0.167 4.167 17 C 0.050 3.950 18 N -0.338 5.338 19 C -0.352 4.352 20 H 0.096 0.904 21 C -0.205 4.205 22 N -0.569 5.569 23 Si 0.742 3.258 24 H -0.212 1.212 25 H -0.215 1.215 26 H -0.211 1.211 27 C 0.000 4.000 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.232 0.768 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.095 0.905 36 H 0.111 0.889 37 H 0.065 0.935 38 H 0.111 0.889 39 H 0.068 0.932 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.106 0.894 43 H 0.045 0.955 44 H 0.093 0.907 45 H 0.064 0.936 46 H 0.058 0.942 47 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -2.612 -2.709 -24.024 24.316 hybrid contribution 0.594 -0.892 1.242 1.640 sum -2.019 -3.601 -22.782 23.152 Atomic orbital electron populations 1.22096 0.95519 1.01702 1.02177 1.21109 0.93714 0.97456 0.83122 0.89518 1.46107 1.66633 1.13971 1.09645 1.19572 0.77276 0.86742 0.83661 1.90651 1.50730 1.15765 1.84527 1.22332 1.04578 1.04055 0.89293 0.85997 1.23098 0.95386 1.00732 0.99130 1.21425 0.97927 0.94092 0.95833 1.21977 1.04705 0.91930 0.96361 1.22760 0.86987 1.00921 0.91012 1.87864 1.45606 1.23615 1.73426 1.22533 1.00731 0.82182 0.95602 1.21859 0.97467 1.00997 0.95401 1.23848 0.97547 1.00706 0.94572 1.22225 0.89601 0.93869 0.89312 1.45983 1.16356 1.71876 0.99630 1.18978 0.98453 1.34891 0.82847 0.90378 1.24781 0.97072 1.01116 0.97494 1.69795 1.15347 1.47241 1.24514 0.86202 0.78898 0.77820 0.82846 1.21207 1.21527 1.21099 1.22523 0.93097 0.97607 0.86815 0.92828 0.91137 0.92934 0.76819 0.88197 0.87931 0.88159 0.90518 0.88882 0.93454 0.88927 0.93206 0.90327 0.90679 0.89397 0.95451 0.90716 0.93568 0.94221 0.95073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 9.44 37.16 0.35 -1.82 16 2 C 0.15 2.29 2.29 -67.93 -0.16 2.14 16 3 H 0.09 1.54 7.48 -51.93 -0.39 1.16 16 4 N -0.71 -9.01 4.94 -53.80 -0.27 -9.28 16 5 C 0.54 7.10 7.56 -10.98 -0.08 7.02 16 6 O -0.54 -8.74 12.80 5.56 0.07 -8.67 16 7 C -0.18 -1.78 5.92 -91.88 -0.54 -2.32 16 8 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 9 C -0.15 -1.19 9.63 -26.81 -0.26 -1.45 16 10 C -0.09 -0.88 2.03 -154.51 -0.31 -1.19 16 11 C -0.11 -1.26 4.34 -26.44 -0.11 -1.38 16 12 C 0.06 0.58 6.84 37.32 0.26 0.83 16 13 O -0.39 -4.14 10.69 -35.23 -0.38 -4.51 16 14 C 0.07 0.52 6.84 37.33 0.26 0.78 16 15 C -0.12 -0.95 5.92 -26.43 -0.16 -1.11 16 16 C -0.15 -2.61 3.35 -89.70 -0.30 -2.91 16 17 C 0.18 4.08 6.98 -2.84 -0.02 4.06 16 18 N -0.61 -15.81 3.70 -177.71 -0.66 -16.47 16 19 C -0.22 -6.36 10.70 -15.06 -0.16 -6.52 16 20 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 21 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 22 N -0.92 -27.45 11.39 55.49 0.63 -26.82 16 23 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 C 0.13 2.55 8.38 -2.97 -0.02 2.52 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 1.01 8.09 -51.93 -0.42 0.59 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.40 4.14 8.60 -40.82 -0.35 3.79 16 32 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.10 1.27 6.06 -51.93 -0.31 0.95 16 35 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 42 H 0.09 1.51 8.14 -51.92 -0.42 1.09 16 43 H 0.03 0.66 8.03 -51.93 -0.42 0.25 16 44 H 0.07 1.91 7.16 -51.93 -0.37 1.53 16 45 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.03 0.65 8.10 -51.93 -0.42 0.23 16 LS Contribution 373.67 15.07 5.63 5.63 Total: -1.00 -32.86 373.67 -9.50 -42.36 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -8.14 Total: 2.19 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -1.37 Total: -1.68 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: -0.29 Total: -52.57 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.31 Total: -13.18 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.86 -9.50 -42.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970992896.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.110 kcal (2) G-P(sol) polarization free energy of solvation -32.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds