Wall clock time and date at job start Fri Apr 10 2020 17:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47309 * 2 1 4 4 N 1.46503 * 109.47311 * 239.99854 * 2 1 3 5 5 C 1.34777 * 119.99240 * 84.99673 * 4 2 1 6 6 O 1.21275 * 120.00721 * 0.02562 * 5 4 2 7 7 C 1.50704 * 119.99406 * 180.02562 * 5 4 2 8 8 H 1.09001 * 115.56844 * 325.72583 * 7 5 4 9 9 C 1.53060 * 117.50755 * 111.45385 * 7 5 4 10 10 C 1.52715 * 117.50405 * 180.02562 * 7 5 4 11 11 C 1.53244 * 117.84434 * 0.33785 * 10 7 5 12 12 C 1.53315 * 108.47732 * 196.12669 * 11 10 7 13 13 O 1.42880 * 109.31133 * 306.03429 * 12 11 10 14 14 C 1.42874 * 114.51086 * 64.41994 * 13 12 11 15 15 C 1.53257 * 117.83037 * 144.72336 * 10 7 5 16 16 C 1.53004 * 109.47359 * 120.00106 * 2 1 3 17 17 C 1.53941 * 113.74392 * 281.82394 * 16 2 1 18 18 N 1.47809 * 86.03944 * 222.08273 * 17 16 2 19 19 C 1.36937 * 134.46074 * 204.64865 * 18 17 16 20 20 H 1.07998 * 120.00181 * 179.86218 * 19 18 17 21 21 C 1.38813 * 119.99485 * 359.85884 * 19 18 17 22 22 N 1.31613 * 120.00251 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99751 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47254 * 60.00016 * 23 21 19 25 25 H 1.48494 * 109.47213 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47088 * 300.00089 * 23 21 19 27 27 C 1.47583 * 91.04999 * 24.54416 * 18 17 16 28 28 H 1.08999 * 109.47476 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46741 * 300.06120 * 1 2 3 30 30 H 1.08994 * 109.47245 * 60.06389 * 1 2 3 31 31 H 0.96991 * 120.00353 * 265.00521 * 4 2 1 32 32 H 1.09003 * 117.50903 * 0.02562 * 9 7 5 33 33 H 1.09001 * 117.53821 * 214.92276 * 9 7 5 34 34 H 1.09001 * 109.63301 * 315.81821 * 11 10 7 35 35 H 1.08991 * 109.63594 * 76.42563 * 11 10 7 36 36 H 1.09004 * 109.49765 * 186.08188 * 12 11 10 37 37 H 1.08998 * 109.50504 * 65.98492 * 12 11 10 38 38 H 1.09002 * 109.49515 * 175.63786 * 14 13 12 39 39 H 1.08998 * 109.49837 * 55.54074 * 14 13 12 40 40 H 1.08994 * 109.63812 * 283.57086 * 15 10 7 41 41 H 1.09001 * 109.63179 * 43.97596 * 15 10 7 42 42 H 1.09009 * 112.94433 * 53.41249 * 16 2 1 43 43 H 1.09000 * 113.76659 * 336.34939 * 17 16 2 44 44 H 1.08999 * 113.77127 * 107.74485 * 17 16 2 45 45 H 0.97001 * 119.99987 * 180.02562 * 22 21 19 46 46 H 1.08997 * 113.77395 * 221.15160 * 27 18 17 47 47 H 1.09003 * 113.87058 * 89.77052 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3571 6 8 1.8589 1.1586 -2.4115 7 6 2.6488 -0.7287 -3.5877 8 1 3.3923 -1.5062 -3.4117 9 6 1.6566 -0.9456 -4.7328 10 6 2.7731 0.0879 -4.8722 11 6 2.3876 1.5701 -4.8182 12 6 2.1994 2.0758 -6.2532 13 8 3.3734 1.7858 -7.0142 14 6 3.6408 0.3926 -7.1837 15 6 3.9351 -0.2372 -5.8171 16 6 2.0400 -0.7213 1.2492 17 6 1.9745 0.1328 2.5283 18 7 3.3098 -0.4179 2.8417 19 6 4.0195 -0.6146 3.9962 20 1 5.0067 -1.0507 3.9556 21 6 3.4698 -0.2534 5.2186 22 7 2.2666 0.2776 5.2681 23 14 4.4381 -0.5210 6.7936 24 1 5.7079 0.2463 6.7304 25 1 3.6359 -0.0549 7.9530 26 1 4.7404 -1.9666 6.9492 27 6 3.5701 -0.6731 1.4115 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5148 0.8895 30 1 -0.3633 0.5128 -0.8905 31 1 2.2490 -1.6317 -1.1527 32 1 0.6410 -0.5740 -4.5962 33 1 1.7471 -1.8655 -5.3106 34 1 1.4563 1.6863 -4.2638 35 1 3.1806 2.1372 -4.3309 36 1 2.0309 3.1526 -6.2403 37 1 1.3412 1.5782 -6.7048 38 1 4.5042 0.2647 -7.8367 39 1 2.7724 -0.0930 -7.6287 40 1 4.8604 0.1754 -5.4152 41 1 4.0309 -1.3180 -5.9214 42 1 1.6176 -1.7194 1.3659 43 1 1.9751 1.2064 2.3401 44 1 1.1955 -0.1778 3.2246 45 1 1.8827 0.5303 6.1223 46 1 4.0627 -1.6259 1.2178 47 1 4.0408 0.1622 0.8930 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970992896.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:59 Heat of formation + Delta-G solvation = -30.714580 kcal Electronic energy + Delta-G solvation = -25850.316341 eV Core-core repulsion = 22227.553488 eV Total energy + Delta-G solvation = -3622.762853 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.60399 -40.35306 -39.40388 -37.31378 -36.05518 -34.15975 -32.14901 -32.06625 -30.84045 -29.34800 -26.70567 -25.90704 -25.03188 -24.58963 -24.22698 -22.53305 -21.34239 -20.57683 -19.81749 -18.79291 -18.05541 -17.42235 -16.95831 -16.88102 -16.67845 -16.15851 -15.86393 -15.79892 -15.47837 -15.14143 -14.77287 -14.59776 -14.53474 -14.04468 -13.98994 -13.39801 -13.28949 -13.19973 -13.11845 -13.02223 -12.90197 -12.66717 -12.42387 -12.32457 -12.10055 -11.97415 -11.80866 -11.62634 -11.57654 -11.29255 -11.23098 -10.87702 -10.84803 -10.63821 -10.08674 -9.96795 -8.94380 -7.92216 -5.26109 1.43907 1.47645 1.53823 1.56847 2.17524 2.46109 2.80988 3.00633 3.27717 3.37581 3.54941 3.65915 3.76948 3.85414 3.95627 3.96742 4.12230 4.18732 4.26658 4.31150 4.44775 4.54053 4.56035 4.57474 4.67540 4.74920 4.78919 4.82124 4.84423 4.85579 4.87733 4.94028 5.00931 5.05087 5.11924 5.20674 5.22834 5.29105 5.31328 5.42137 5.51753 5.60832 5.65114 5.92178 6.33755 6.67941 6.90027 7.37249 7.58874 8.54667 9.24630 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.029777 B = 0.002538 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.091059 B =11031.734454 C =11329.145099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.163 3.837 3 H 0.057 0.943 4 N -0.705 5.705 5 C 0.536 3.464 6 O -0.576 6.576 7 C -0.187 4.187 8 H 0.147 0.853 9 C -0.122 4.122 10 C -0.105 4.105 11 C -0.109 4.109 12 C 0.063 3.937 13 O -0.409 6.409 14 C 0.060 3.940 15 C -0.114 4.114 16 C -0.107 4.107 17 C 0.170 3.830 18 N -0.644 5.644 19 C -0.239 4.239 20 H 0.083 0.917 21 C -0.068 4.068 22 N -0.954 5.954 23 Si 0.980 3.020 24 H -0.280 1.280 25 H -0.294 1.294 26 H -0.272 1.272 27 C 0.128 3.872 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.413 0.587 32 H 0.092 0.908 33 H 0.135 0.865 34 H 0.081 0.919 35 H 0.044 0.956 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.108 0.892 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.009 0.991 44 H 0.047 0.953 45 H 0.249 0.751 46 H 0.062 0.938 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.081 -6.344 -26.289 27.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.058 3.942 3 H 0.075 0.925 4 N -0.356 5.356 5 C 0.324 3.676 6 O -0.456 6.456 7 C -0.207 4.207 8 H 0.165 0.835 9 C -0.159 4.159 10 C -0.105 4.105 11 C -0.147 4.147 12 C -0.013 4.013 13 O -0.328 6.328 14 C -0.017 4.017 15 C -0.151 4.151 16 C -0.127 4.127 17 C 0.044 3.956 18 N -0.371 5.371 19 C -0.368 4.368 20 H 0.101 0.899 21 C -0.261 4.261 22 N -0.603 5.603 23 Si 0.808 3.192 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.198 1.198 27 C 0.003 3.997 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.250 0.750 32 H 0.111 0.889 33 H 0.153 0.847 34 H 0.099 0.901 35 H 0.063 0.937 36 H 0.110 0.890 37 H 0.081 0.919 38 H 0.126 0.874 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.027 0.973 44 H 0.065 0.935 45 H 0.058 0.942 46 H 0.080 0.920 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -2.100 -5.376 -26.046 26.678 hybrid contribution 0.461 -0.021 1.807 1.865 sum -1.639 -5.397 -24.240 24.887 Atomic orbital electron populations 1.22016 0.94162 1.02874 1.01707 1.20699 0.94611 0.95719 0.83213 0.92517 1.45915 1.66472 1.14558 1.08635 1.20220 0.76463 0.86423 0.84516 1.90656 1.52218 1.17614 1.85156 1.22351 1.06087 1.04531 0.87768 0.83529 1.23203 0.94296 1.01046 0.97385 1.21496 0.99661 0.93110 0.96263 1.21814 1.02529 0.93476 0.96835 1.22725 0.87398 1.01153 0.90042 1.87835 1.45915 1.25695 1.73384 1.22773 1.02108 0.80824 0.95951 1.21858 0.95918 1.02631 0.94732 1.23437 0.95890 1.00316 0.93078 1.22129 0.88208 0.93619 0.91619 1.46428 1.17326 1.72113 1.01200 1.19410 0.98847 1.34288 0.84210 0.89895 1.25661 0.98172 1.01501 1.00772 1.69993 1.16904 1.48601 1.24761 0.85133 0.77390 0.78176 0.78513 1.20621 1.21960 1.19805 1.22658 0.94924 0.98329 0.83785 0.90763 0.92131 0.92932 0.75026 0.88921 0.84669 0.90060 0.93731 0.88972 0.91877 0.87379 0.91625 0.91761 0.87856 0.87635 0.97331 0.93499 0.94186 0.91961 0.95322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.03 9.44 71.98 0.68 -3.35 16 2 C 0.16 4.89 2.29 44.99 0.10 5.00 16 3 H 0.06 2.08 7.48 -2.39 -0.02 2.06 16 4 N -0.71 -16.56 4.94 -442.53 -2.19 -18.75 16 5 C 0.54 13.49 7.56 87.66 0.66 14.15 16 6 O -0.58 -19.07 12.80 -3.01 -0.04 -19.11 16 7 C -0.19 -3.17 5.92 -11.61 -0.07 -3.24 16 8 H 0.15 1.78 8.14 -2.39 -0.02 1.76 16 9 C -0.12 -1.57 9.63 30.54 0.29 -1.27 16 10 C -0.10 -1.80 2.03 -52.18 -0.11 -1.90 16 11 C -0.11 -2.48 4.34 30.78 0.13 -2.34 16 12 C 0.06 1.20 6.84 72.09 0.49 1.69 16 13 O -0.41 -8.33 10.69 -148.98 -1.59 -9.93 16 14 C 0.06 0.79 6.84 72.09 0.49 1.28 16 15 C -0.11 -1.50 5.92 30.79 0.18 -1.32 16 16 C -0.11 -3.75 3.35 -10.14 -0.03 -3.78 16 17 C 0.17 8.15 6.98 86.44 0.60 8.75 16 18 N -0.64 -33.59 3.70 -716.14 -2.65 -36.24 16 19 C -0.24 -13.67 10.70 84.03 0.90 -12.77 16 20 H 0.08 4.51 7.83 -2.91 -0.02 4.48 16 21 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 22 N -0.95 -58.36 11.39 21.65 0.25 -58.11 16 23 Si 0.98 46.18 29.55 68.60 2.03 48.21 16 24 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 25 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 26 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 27 C 0.13 5.07 8.38 86.48 0.72 5.80 16 28 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.06 1.75 8.09 -2.39 -0.02 1.73 16 30 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.41 7.29 8.60 -92.71 -0.80 6.49 16 32 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.14 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.08 2.14 6.06 -2.39 -0.01 2.13 16 35 H 0.04 1.26 8.10 -2.39 -0.02 1.24 16 36 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 37 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.10 0.79 8.08 -2.39 -0.02 0.77 16 42 H 0.11 3.38 8.14 -2.38 -0.02 3.36 16 43 H 0.01 0.45 8.03 -2.39 -0.02 0.43 16 44 H 0.05 2.49 7.16 -2.39 -0.02 2.47 16 45 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 46 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 47 H 0.03 1.18 8.10 -2.39 -0.02 1.16 16 Total: -1.00 -74.00 373.67 1.48 -72.52 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.15 Total: 18.19 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: 5.53 Total: 3.22 kcal Atomic # 7 Polarization: -108.51 SS G_CDS: -4.59 Total: -113.10 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -1.63 Total: -29.03 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -74.00 1.48 -72.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970992896.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.808 kcal (2) G-P(sol) polarization free energy of solvation -74.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds