Wall clock time and date at job start Fri Apr 10 2020 18:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46577 * 2 1 4 4 N 1.46496 * 109.47690 * 120.00207 * 2 1 3 5 5 C 1.34781 * 119.99682 * 275.00440 * 4 2 1 6 6 O 1.21273 * 120.00240 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99526 * 179.97438 * 5 4 2 8 8 H 1.09002 * 115.55494 * 327.80869 * 7 5 4 9 9 C 1.53066 * 117.50388 * 182.10775 * 7 5 4 10 10 C 1.52719 * 117.50688 * 113.52400 * 7 5 4 11 11 C 1.53247 * 117.82827 * 359.59847 * 10 7 5 12 12 C 1.53323 * 108.48966 * 265.30621 * 11 10 7 13 13 O 1.42867 * 109.32337 * 306.03698 * 12 11 10 14 14 C 1.42864 * 114.52916 * 64.36147 * 13 12 11 15 15 C 1.53250 * 117.82553 * 215.32894 * 10 7 5 16 16 C 1.53000 * 109.47121 * 240.00545 * 2 1 3 17 17 C 1.53938 * 113.74385 * 156.67080 * 16 2 1 18 18 N 1.47585 * 86.11749 * 222.04654 * 17 16 2 19 19 C 1.36933 * 134.49127 * 204.63944 * 18 17 16 20 20 H 1.08001 * 120.00210 * 180.02562 * 19 18 17 21 21 C 1.38813 * 120.00345 * 0.02562 * 19 18 17 22 22 N 1.31625 * 119.99898 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00336 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47042 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47340 * 119.99899 * 23 21 19 26 26 H 1.48504 * 109.47278 * 240.00287 * 23 21 19 27 27 C 1.47581 * 91.01289 * 24.64091 * 18 17 16 28 28 H 1.08992 * 109.47561 * 59.99730 * 1 2 3 29 29 H 1.09009 * 109.47161 * 299.99717 * 1 2 3 30 30 H 1.09001 * 109.46964 * 180.02562 * 1 2 3 31 31 H 0.96996 * 120.00417 * 94.99467 * 4 2 1 32 32 H 1.08995 * 117.50523 * 0.02562 * 9 7 5 33 33 H 1.09003 * 117.50443 * 145.03049 * 9 7 5 34 34 H 1.09001 * 109.63055 * 25.00848 * 11 10 7 35 35 H 1.09000 * 109.63842 * 145.60217 * 11 10 7 36 36 H 1.09004 * 109.49465 * 186.08330 * 12 11 10 37 37 H 1.09000 * 109.52015 * 66.00986 * 12 11 10 38 38 H 1.09000 * 109.49529 * 175.68733 * 14 13 12 39 39 H 1.08997 * 109.52527 * 55.60569 * 14 13 12 40 40 H 1.09005 * 109.63465 * 214.39409 * 15 10 7 41 41 H 1.09002 * 109.63289 * 334.78800 * 15 10 7 42 42 H 1.09000 * 112.94143 * 288.40354 * 16 2 1 43 43 H 1.09003 * 113.77102 * 336.34685 * 17 16 2 44 44 H 1.08998 * 113.77236 * 107.74544 * 17 16 2 45 45 H 0.96995 * 119.99931 * 180.02562 * 22 21 19 46 46 H 1.08999 * 113.76681 * 221.05672 * 27 18 17 47 47 H 1.08998 * 113.77112 * 89.66149 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0182 2.3571 6 8 1.8590 1.1585 2.4115 7 6 2.6491 -0.7289 3.5876 8 1 2.3818 -1.7829 3.6638 9 6 2.7263 0.0766 4.8870 10 6 4.0063 -0.3032 4.1436 11 6 4.7645 0.8068 3.4079 12 6 5.7450 0.1567 2.4247 13 8 6.5711 -0.7739 3.1267 14 6 5.8697 -1.8865 3.6844 15 6 4.8983 -1.3862 4.7601 16 6 2.0400 -0.7211 -1.2493 17 6 3.4665 -0.3144 -1.6609 18 7 2.9581 -0.3117 -3.0464 19 6 3.5326 -0.4674 -4.2796 20 1 2.9221 -0.4216 -5.1694 21 6 4.8995 -0.6842 -4.3863 22 7 5.6436 -0.7396 -3.3020 23 14 5.6830 -0.8973 -6.0685 24 1 4.6376 -0.7942 -7.1181 25 1 6.7017 0.1626 -6.2781 26 1 6.3325 -2.2306 -6.1469 27 6 1.5821 -0.0738 -2.5689 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 0.5138 0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 2.2491 -1.6317 1.1525 32 1 2.4137 1.1201 4.8516 33 1 2.5099 -0.4477 5.8178 34 1 4.0587 1.4324 2.8616 35 1 5.3151 1.4132 4.1272 36 1 6.3690 0.9265 1.9706 37 1 5.1882 -0.3659 1.6469 38 1 6.5828 -2.5789 4.1318 39 1 5.3116 -2.3961 2.8990 40 1 5.4603 -0.9666 5.5945 41 1 4.2808 -2.2122 5.1130 42 1 1.8828 -1.7991 -1.2116 43 1 3.7639 0.6703 -1.3001 44 1 4.2151 -1.0830 -1.4690 45 1 6.5988 -0.8907 -3.3765 46 1 0.8263 -0.6504 -3.1021 47 1 1.3260 0.9815 -2.4749 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970992897.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:02 Heat of formation + Delta-G solvation = -13.086702 kcal Electronic energy + Delta-G solvation = -26735.412474 eV Core-core repulsion = 23113.414023 eV Total energy + Delta-G solvation = -3621.998451 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.64498 -39.07159 -38.04146 -36.35602 -34.72354 -32.20767 -31.30190 -30.66612 -29.99502 -27.52333 -25.33568 -24.46891 -23.83069 -23.63069 -22.78505 -21.15232 -20.29420 -19.45265 -18.55855 -17.04090 -16.75306 -16.32002 -16.02858 -15.99813 -14.98635 -14.92824 -14.80211 -14.61977 -13.89252 -13.70851 -13.56122 -13.49101 -13.11057 -13.02135 -12.55925 -12.41988 -12.20053 -11.99721 -11.68094 -11.44717 -11.32228 -11.31219 -11.14806 -10.91890 -10.83749 -10.71916 -10.44461 -10.36521 -10.16307 -9.92530 -9.75385 -9.64353 -9.42008 -9.27681 -8.80275 -8.78021 -6.87439 -5.76678 -3.08960 2.55112 3.24578 3.38799 3.44131 3.46720 3.67683 3.88456 4.39519 4.45097 4.54614 4.61814 4.69868 4.93059 4.93477 5.12777 5.15433 5.26608 5.28783 5.29339 5.43161 5.51155 5.53047 5.58331 5.61305 5.65211 5.69650 5.76438 5.80262 5.89889 5.93759 6.02129 6.02887 6.09751 6.15443 6.23828 6.35608 6.40030 6.57930 6.65894 6.81228 7.22458 7.23755 7.35372 7.55858 7.68976 7.98528 8.38315 9.05121 9.71112 10.60254 11.40397 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.014127 B = 0.004171 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.591703 B = 6710.985255 C = 8265.305098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.151 3.849 3 H 0.086 0.914 4 N -0.714 5.714 5 C 0.544 3.456 6 O -0.544 6.544 7 C -0.186 4.186 8 H 0.120 0.880 9 C -0.138 4.138 10 C -0.095 4.095 11 C -0.127 4.127 12 C 0.063 3.937 13 O -0.382 6.382 14 C 0.062 3.938 15 C -0.117 4.117 16 C -0.147 4.147 17 C 0.172 3.828 18 N -0.612 5.612 19 C -0.223 4.223 20 H 0.080 0.920 21 C -0.007 4.007 22 N -0.920 5.920 23 Si 0.910 3.090 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.129 3.871 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.399 0.601 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.058 0.942 38 H 0.092 0.908 39 H 0.053 0.947 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.025 0.975 44 H 0.071 0.929 45 H 0.253 0.747 46 H 0.044 0.956 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.577 -2.788 17.767 18.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.046 3.954 3 H 0.104 0.896 4 N -0.363 5.363 5 C 0.331 3.669 6 O -0.422 6.422 7 C -0.207 4.207 8 H 0.138 0.862 9 C -0.175 4.175 10 C -0.095 4.095 11 C -0.165 4.165 12 C -0.014 4.014 13 O -0.300 6.300 14 C -0.015 4.015 15 C -0.155 4.155 16 C -0.167 4.167 17 C 0.047 3.953 18 N -0.338 5.338 19 C -0.351 4.351 20 H 0.098 0.902 21 C -0.204 4.204 22 N -0.568 5.568 23 Si 0.741 3.259 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.217 1.217 27 C 0.003 3.997 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.233 0.767 32 H 0.127 0.873 33 H 0.119 0.881 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.115 0.885 37 H 0.076 0.924 38 H 0.111 0.889 39 H 0.071 0.929 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.042 0.958 44 H 0.089 0.911 45 H 0.063 0.937 46 H 0.062 0.938 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -5.326 -1.972 17.543 18.440 hybrid contribution 0.178 -0.594 -0.980 1.160 sum -5.148 -2.566 16.563 17.534 Atomic orbital electron populations 1.22129 0.95745 1.01696 1.02055 1.21091 0.93435 0.97521 0.83353 0.89560 1.46046 1.66631 1.14089 1.09529 1.19516 0.76997 0.86713 0.83701 1.90667 1.50579 1.15927 1.85055 1.22447 1.02988 1.00661 0.94636 0.86203 1.23042 0.99443 1.01564 0.93453 1.21443 0.87934 0.98820 1.01341 1.21959 0.98876 0.96610 0.99046 1.22628 0.93326 0.92250 0.93148 1.87868 1.34756 1.35313 1.72110 1.22565 0.95150 0.88754 0.95045 1.21865 0.97626 0.97105 0.98862 1.23823 1.00990 0.99636 0.92239 1.22241 0.91649 0.98163 0.83285 1.45947 1.02434 1.83268 1.02154 1.19071 0.91119 1.41995 0.82916 0.90247 1.24772 0.95940 1.02388 0.97281 1.69821 1.05136 1.55658 1.26152 0.86072 0.79245 0.77398 0.83209 1.20477 1.21727 1.21703 1.22500 0.89740 0.96732 0.90743 0.91434 0.92837 0.92786 0.76728 0.87332 0.88099 0.89276 0.90492 0.88507 0.92405 0.88938 0.92906 0.90257 0.90687 0.89470 0.95774 0.91078 0.93689 0.93784 0.94783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.29 37.16 0.35 -1.75 16 2 C 0.15 2.28 2.42 -67.93 -0.16 2.12 16 3 H 0.09 1.53 7.37 -51.93 -0.38 1.14 16 4 N -0.71 -9.44 5.08 -53.81 -0.27 -9.71 16 5 C 0.54 7.53 6.52 -10.98 -0.07 7.45 16 6 O -0.54 -9.32 14.65 5.56 0.08 -9.24 16 7 C -0.19 -1.98 5.88 -91.88 -0.54 -2.52 16 8 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 9 C -0.14 -1.36 9.52 -26.80 -0.26 -1.62 16 10 C -0.09 -1.00 2.03 -154.49 -0.31 -1.31 16 11 C -0.13 -1.59 5.59 -26.44 -0.15 -1.73 16 12 C 0.06 0.86 6.84 37.32 0.26 1.12 16 13 O -0.38 -5.25 10.69 -35.23 -0.38 -5.63 16 14 C 0.06 0.64 6.85 37.33 0.26 0.90 16 15 C -0.12 -1.03 5.92 -26.43 -0.16 -1.19 16 16 C -0.15 -2.59 3.50 -89.70 -0.31 -2.90 16 17 C 0.17 3.95 7.07 -2.98 -0.02 3.93 16 18 N -0.61 -15.60 3.70 -177.92 -0.66 -16.26 16 19 C -0.22 -6.28 10.70 -15.06 -0.16 -6.45 16 20 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 21 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 22 N -0.92 -27.25 11.38 55.49 0.63 -26.61 16 23 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 C 0.13 2.58 7.56 -2.97 -0.02 2.56 16 28 H 0.07 0.87 7.43 -51.93 -0.39 0.48 16 29 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.40 4.50 8.60 -40.82 -0.35 4.15 16 32 H 0.11 1.24 7.67 -51.93 -0.40 0.84 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.09 1.29 5.95 -51.93 -0.31 0.98 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 42 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 43 H 0.02 0.59 7.96 -51.93 -0.41 0.18 16 44 H 0.07 1.81 7.15 -51.93 -0.37 1.43 16 45 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 46 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 47 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16 LS Contribution 373.67 15.07 5.63 5.63 Total: -1.00 -32.76 373.67 -9.46 -42.22 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -8.07 Total: 4.12 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -1.41 Total: -1.69 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -0.30 Total: -52.59 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -0.30 Total: -14.87 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.76 -9.46 -42.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970992897.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.134 kcal (2) G-P(sol) polarization free energy of solvation -32.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds