Wall clock time and date at job start Fri Apr 10 2020 18:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36939 * 119.99934 * 2 1 4 4 H 1.07994 * 120.00051 * 203.87690 * 3 2 1 5 5 C 1.38814 * 119.99554 * 23.88642 * 3 2 1 6 6 N 1.31616 * 120.00306 * 10.81659 * 5 3 2 7 7 Si 1.86801 * 119.99670 * 190.82170 * 5 3 2 8 8 H 1.48502 * 109.47088 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.47140 * 119.99835 * 7 5 3 10 10 H 1.48507 * 109.46772 * 240.00175 * 7 5 3 11 11 C 1.46507 * 119.99959 * 180.02562 * 2 1 3 12 12 H 1.09004 * 110.63744 * 179.29519 * 11 2 1 13 13 C 1.55158 * 110.72232 * 56.15361 * 11 2 1 14 14 C 1.54904 * 101.57942 * 205.95804 * 13 11 2 15 15 N 1.47423 * 104.83399 * 37.00760 * 14 13 11 16 16 C 1.34778 * 125.64517 * 155.83662 * 15 14 13 17 17 O 1.21286 * 119.99600 * 180.02562 * 16 15 14 18 18 C 1.50696 * 120.00320 * 0.02562 * 16 15 14 19 19 H 1.09000 * 110.45733 * 59.29521 * 18 16 15 20 20 C 1.54520 * 110.51007 * 296.69579 * 18 16 15 21 21 C 1.54801 * 103.90934 * 241.38621 * 20 18 16 22 22 O 1.44428 * 104.80320 * 335.92021 * 21 20 18 23 23 C 1.44422 * 105.27646 * 40.58426 * 22 21 20 24 24 H 1.09008 * 110.36897 * 78.32018 * 23 22 21 25 25 C 1.53001 * 110.46458 * 200.60767 * 23 22 21 26 26 C 1.53000 * 117.49726 * 4.05971 * 25 23 22 27 27 C 1.52997 * 60.00034 * 252.50971 * 26 25 23 28 28 C 1.47021 * 108.70396 * 335.87443 * 15 14 13 29 29 H 1.09007 * 109.46920 * 274.97257 * 1 2 3 30 30 H 1.08992 * 109.47522 * 34.97713 * 1 2 3 31 31 H 1.09004 * 109.47184 * 154.97626 * 1 2 3 32 32 H 0.97001 * 120.00306 * 179.97438 * 6 5 3 33 33 H 1.08999 * 111.00213 * 324.03575 * 13 11 2 34 34 H 1.09007 * 111.00300 * 87.88075 * 13 11 2 35 35 H 1.09003 * 110.36316 * 155.84974 * 14 13 11 36 36 H 1.09002 * 110.36447 * 278.16945 * 14 13 11 37 37 H 1.08995 * 110.51069 * 359.97438 * 20 18 16 38 38 H 1.08994 * 110.51020 * 122.71112 * 20 18 16 39 39 H 1.09001 * 110.30795 * 217.11542 * 21 20 18 40 40 H 1.09004 * 110.52697 * 94.83065 * 21 20 18 41 41 H 1.09001 * 115.54678 * 149.76954 * 25 23 22 42 42 H 1.08994 * 117.50148 * 0.02562 * 26 25 23 43 43 H 1.09004 * 117.49525 * 145.01497 * 26 25 23 44 44 H 1.08998 * 117.49961 * 252.50970 * 27 26 25 45 45 H 1.08997 * 117.51582 * 107.48626 * 27 26 25 46 46 H 1.09004 * 109.87848 * 241.64046 * 28 15 14 47 47 H 1.08999 * 109.88323 * 120.47945 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1603 1.2260 -0.3786 5 6 1.5446 2.3366 0.4868 6 7 0.4048 2.2550 1.1398 7 14 2.3482 4.0008 0.2149 8 1 3.6138 3.8218 -0.5412 9 1 1.4288 4.8742 -0.5577 10 1 2.6414 4.6293 1.5281 11 6 2.1975 -1.2688 -0.0006 12 1 3.2729 -1.0915 -0.0130 13 6 1.7720 -2.1478 -1.2062 14 6 2.0799 -3.5709 -0.6775 15 7 1.7254 -3.5270 0.7528 16 6 1.3876 -4.5887 1.5113 17 8 1.1132 -4.4344 2.6825 18 6 1.3508 -5.9674 0.9040 19 1 2.3290 -6.2334 0.5034 20 6 0.2741 -6.0435 -0.2016 21 6 -0.7104 -7.1223 0.3113 22 8 0.0716 -7.9375 1.2113 23 6 0.8932 -7.0077 1.9503 24 1 0.3093 -6.5256 2.7344 25 6 2.1030 -7.7247 2.5529 26 6 2.2896 -9.2044 2.2112 27 6 1.8342 -8.7945 3.6131 28 6 1.8006 -2.1332 1.2146 29 1 -0.3633 0.0891 1.0239 30 1 -0.3634 0.8420 -0.5890 31 1 -0.3634 -0.9312 -0.4347 32 1 -0.0178 3.0590 1.4803 33 1 0.7093 -2.0314 -1.4188 34 1 2.3723 -1.9199 -2.0871 35 1 1.4691 -4.3091 -1.1973 36 1 3.1387 -3.7999 -0.7991 37 1 -0.2319 -5.0840 -0.3086 38 1 0.7195 -6.3495 -1.1481 39 1 -1.0806 -7.7226 -0.5198 40 1 -1.5414 -6.6594 0.8437 41 1 3.0007 -7.1171 2.6672 42 1 1.5508 -9.6669 1.5568 43 1 3.3103 -9.5705 2.1004 44 1 2.5553 -8.8911 4.4248 45 1 0.7956 -8.9873 3.8817 46 1 2.5546 -2.0420 1.9965 47 1 0.8295 -1.8156 1.5943 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971978990.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:10 Heat of formation + Delta-G solvation = -22.063132 kcal Electronic energy + Delta-G solvation = -26529.563115 eV Core-core repulsion = 22907.175417 eV Total energy + Delta-G solvation = -3622.387698 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.69931 -39.03006 -37.32172 -36.57322 -34.85226 -32.71772 -31.45359 -29.77007 -29.34029 -27.94544 -26.08919 -24.71090 -23.39239 -22.54326 -22.43431 -21.81542 -20.55540 -19.30121 -19.05695 -17.21737 -16.99895 -16.58946 -16.15083 -15.61493 -15.47444 -15.05694 -14.75577 -14.40859 -14.18502 -13.84045 -13.50512 -13.38198 -12.82483 -12.68437 -12.43660 -12.26321 -12.18834 -11.72588 -11.62445 -11.58598 -11.55449 -11.44963 -11.12708 -10.94751 -10.85126 -10.59699 -10.49998 -10.41429 -10.31921 -10.28732 -9.92347 -9.86675 -9.86180 -9.49831 -8.62368 -8.34964 -6.84467 -5.79593 -3.29090 2.74569 3.11160 3.33836 3.40928 3.42852 3.62102 3.71570 4.27159 4.40512 4.43580 4.55244 4.71784 4.81098 4.86227 4.94672 4.98062 5.12711 5.21779 5.23709 5.28433 5.37351 5.48375 5.50274 5.55842 5.56688 5.63270 5.68109 5.77393 5.79563 5.85467 5.86084 5.96051 6.02581 6.12059 6.29443 6.32258 6.48624 6.60435 6.66570 6.78047 6.82410 7.30413 7.68563 7.74577 7.76418 8.29941 8.34179 9.15046 9.76837 10.26017 11.24489 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.029775 B = 0.002968 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.144918 B = 9430.241570 C = 9647.519416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.586 5.586 3 C -0.262 4.262 4 H 0.071 0.929 5 C 0.005 3.995 6 N -0.904 5.904 7 Si 0.907 3.093 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.289 1.289 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.154 4.154 14 C 0.096 3.904 15 N -0.609 5.609 16 C 0.530 3.470 17 O -0.541 6.541 18 C -0.132 4.132 19 H 0.108 0.892 20 C -0.146 4.146 21 C 0.047 3.953 22 O -0.368 6.368 23 C 0.120 3.880 24 H 0.093 0.907 25 C -0.151 4.151 26 C -0.167 4.167 27 C -0.173 4.173 28 C 0.087 3.913 29 H 0.032 0.968 30 H 0.044 0.956 31 H 0.000 1.000 32 H 0.253 0.747 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.062 0.938 41 H 0.113 0.887 42 H 0.104 0.896 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.060 0.940 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.645 -20.306 -4.142 20.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.306 5.306 3 C -0.391 4.391 4 H 0.088 0.912 5 C -0.194 4.194 6 N -0.548 5.548 7 Si 0.737 3.263 8 H -0.202 1.202 9 H -0.216 1.216 10 H -0.216 1.216 11 C 0.062 3.938 12 H 0.096 0.904 13 C -0.194 4.194 14 C -0.028 4.028 15 N -0.343 5.343 16 C 0.318 3.682 17 O -0.419 6.419 18 C -0.154 4.154 19 H 0.126 0.874 20 C -0.184 4.184 21 C -0.030 4.030 22 O -0.288 6.288 23 C 0.063 3.937 24 H 0.111 0.889 25 C -0.169 4.169 26 C -0.204 4.204 27 C -0.210 4.210 28 C -0.038 4.038 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.019 0.981 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.112 0.888 40 H 0.080 0.920 41 H 0.131 0.869 42 H 0.123 0.877 43 H 0.108 0.892 44 H 0.111 0.889 45 H 0.114 0.886 46 H 0.078 0.922 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.353 -20.317 -3.372 20.639 hybrid contribution 0.422 1.305 -0.118 1.376 sum 1.775 -19.012 -3.490 19.411 Atomic orbital electron populations 1.20803 0.82446 0.95522 0.99603 1.43915 1.01887 0.99883 1.84902 1.19260 0.99064 0.85398 1.35424 0.91151 1.25108 0.97690 0.98795 0.97776 1.70070 1.18479 1.27464 1.38774 0.86148 0.78673 0.84018 0.77451 1.20242 1.21562 1.21634 1.21359 0.96411 0.85954 0.90055 0.90380 1.23356 1.02796 0.93112 1.00098 1.22449 0.99908 0.99287 0.81117 1.48533 1.66787 1.07860 1.11126 1.19905 0.77113 0.85153 0.86029 1.90705 1.49432 1.85516 1.16230 1.22617 1.02047 0.93432 0.97307 0.87394 1.23044 0.96275 1.00806 0.98268 1.23445 0.93930 0.92359 0.93283 1.89086 1.55664 1.30032 1.53971 1.22335 0.91025 0.87286 0.93093 0.88920 1.22261 0.98697 0.91862 1.04118 1.22885 1.02290 0.96474 0.98770 1.22924 1.02555 1.03083 0.92478 1.22918 1.02429 0.78822 0.99597 0.94992 0.93754 0.98111 0.93622 0.90473 0.90384 0.90977 0.91644 0.89704 0.89575 0.88768 0.91977 0.86902 0.87728 0.89191 0.88871 0.88642 0.92196 0.90889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.83 7.69 59.85 0.46 4.29 16 2 N -0.59 -13.98 2.94 -171.38 -0.50 -14.49 16 3 C -0.26 -6.92 9.61 -15.06 -0.14 -7.07 16 4 H 0.07 1.81 7.84 -52.49 -0.41 1.39 16 5 C 0.01 0.14 5.14 -17.43 -0.09 0.06 16 6 N -0.90 -25.90 10.64 55.49 0.59 -25.31 16 7 Si 0.91 21.35 29.57 -169.99 -5.03 16.32 16 8 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 9 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 11 C 0.17 3.31 3.43 -66.09 -0.23 3.08 16 12 H 0.08 1.48 7.94 -51.93 -0.41 1.07 16 13 C -0.15 -2.30 6.60 -24.58 -0.16 -2.46 16 14 C 0.10 1.18 6.54 -2.53 -0.02 1.16 16 15 N -0.61 -9.54 3.32 -170.53 -0.57 -10.10 16 16 C 0.53 8.38 7.01 -10.99 -0.08 8.30 16 17 O -0.54 -10.67 15.79 5.55 0.09 -10.58 16 18 C -0.13 -1.56 2.49 -90.20 -0.22 -1.78 16 19 H 0.11 1.12 7.87 -51.93 -0.41 0.71 16 20 C -0.15 -1.41 4.93 -24.98 -0.12 -1.53 16 21 C 0.05 0.45 7.64 38.11 0.29 0.74 16 22 O -0.37 -4.32 9.79 -35.23 -0.34 -4.66 16 23 C 0.12 1.49 2.98 -25.96 -0.08 1.41 16 24 H 0.09 1.37 6.93 -51.92 -0.36 1.01 16 25 C -0.15 -1.69 5.60 -90.62 -0.51 -2.20 16 26 C -0.17 -1.61 9.89 -26.73 -0.26 -1.87 16 27 C -0.17 -1.75 10.24 -26.73 -0.27 -2.03 16 28 C 0.09 1.66 6.51 -3.07 -0.02 1.64 16 29 H 0.03 0.84 7.26 -51.92 -0.38 0.47 16 30 H 0.04 1.14 7.33 -51.93 -0.38 0.75 16 31 H 0.00 0.01 6.20 -51.93 -0.32 -0.31 16 32 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.08 1.23 6.21 -51.93 -0.32 0.91 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.07 0.72 5.47 -51.93 -0.28 0.44 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.90 7.19 -51.93 -0.37 0.52 16 38 H 0.09 0.65 7.96 -51.93 -0.41 0.24 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.11 1.26 8.13 -51.93 -0.42 0.84 16 42 H 0.10 1.06 7.07 -51.93 -0.37 0.69 16 43 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 46 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 47 H 0.07 1.61 7.03 -51.93 -0.36 1.24 16 LS Contribution 363.54 15.07 5.48 5.48 Total: -1.00 -30.86 363.54 -9.48 -40.34 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -7.74 Total: 1.27 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -1.46 Total: 1.74 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: -0.48 Total: -49.90 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.26 Total: -15.24 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.86 -9.48 -40.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971978990.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.273 kcal (2) G-P(sol) polarization free energy of solvation -30.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds