Wall clock time and date at job start Fri Apr 10 2020 18:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36939 * 119.99934 * 2 1 4 4 H 1.07994 * 120.00051 * 203.87690 * 3 2 1 5 5 C 1.38814 * 119.99554 * 23.88642 * 3 2 1 6 6 N 1.31616 * 120.00306 * 10.81659 * 5 3 2 7 7 Si 1.86801 * 119.99670 * 190.82170 * 5 3 2 8 8 H 1.48502 * 109.47088 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.47140 * 119.99835 * 7 5 3 10 10 H 1.48507 * 109.46772 * 240.00175 * 7 5 3 11 11 C 1.46507 * 119.99959 * 180.02562 * 2 1 3 12 12 H 1.09004 * 110.63744 * 179.29519 * 11 2 1 13 13 C 1.55158 * 110.72232 * 56.15361 * 11 2 1 14 14 C 1.54904 * 101.57942 * 205.95804 * 13 11 2 15 15 N 1.47423 * 104.83399 * 37.00760 * 14 13 11 16 16 C 1.34778 * 125.64517 * 155.83662 * 15 14 13 17 17 O 1.21286 * 119.99600 * 180.02562 * 16 15 14 18 18 C 1.50696 * 120.00320 * 0.02562 * 16 15 14 19 19 H 1.09000 * 110.45733 * 59.29521 * 18 16 15 20 20 C 1.54520 * 110.51007 * 296.69579 * 18 16 15 21 21 C 1.54801 * 103.90934 * 241.38621 * 20 18 16 22 22 O 1.44428 * 104.80320 * 335.92021 * 21 20 18 23 23 C 1.44422 * 105.27646 * 40.58426 * 22 21 20 24 24 H 1.09008 * 110.36897 * 78.32018 * 23 22 21 25 25 C 1.53001 * 110.46458 * 200.60767 * 23 22 21 26 26 C 1.53000 * 117.49726 * 4.05971 * 25 23 22 27 27 C 1.52997 * 60.00034 * 252.50971 * 26 25 23 28 28 C 1.47021 * 108.70396 * 335.87443 * 15 14 13 29 29 H 1.09007 * 109.46920 * 274.97257 * 1 2 3 30 30 H 1.08992 * 109.47522 * 34.97713 * 1 2 3 31 31 H 1.09004 * 109.47184 * 154.97626 * 1 2 3 32 32 H 0.97001 * 120.00306 * 179.97438 * 6 5 3 33 33 H 1.08999 * 111.00213 * 324.03575 * 13 11 2 34 34 H 1.09007 * 111.00300 * 87.88075 * 13 11 2 35 35 H 1.09003 * 110.36316 * 155.84974 * 14 13 11 36 36 H 1.09002 * 110.36447 * 278.16945 * 14 13 11 37 37 H 1.08995 * 110.51069 * 359.97438 * 20 18 16 38 38 H 1.08994 * 110.51020 * 122.71112 * 20 18 16 39 39 H 1.09001 * 110.30795 * 217.11542 * 21 20 18 40 40 H 1.09004 * 110.52697 * 94.83065 * 21 20 18 41 41 H 1.09001 * 115.54678 * 149.76954 * 25 23 22 42 42 H 1.08994 * 117.50148 * 0.02562 * 26 25 23 43 43 H 1.09004 * 117.49525 * 145.01497 * 26 25 23 44 44 H 1.08998 * 117.49961 * 252.50970 * 27 26 25 45 45 H 1.08997 * 117.51582 * 107.48626 * 27 26 25 46 46 H 1.09004 * 109.87848 * 241.64046 * 28 15 14 47 47 H 1.08999 * 109.88323 * 120.47945 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1603 1.2260 -0.3786 5 6 1.5446 2.3366 0.4868 6 7 0.4048 2.2550 1.1398 7 14 2.3482 4.0008 0.2149 8 1 3.6138 3.8218 -0.5412 9 1 1.4288 4.8742 -0.5577 10 1 2.6414 4.6293 1.5281 11 6 2.1975 -1.2688 -0.0006 12 1 3.2729 -1.0915 -0.0130 13 6 1.7720 -2.1478 -1.2062 14 6 2.0799 -3.5709 -0.6775 15 7 1.7254 -3.5270 0.7528 16 6 1.3876 -4.5887 1.5113 17 8 1.1132 -4.4344 2.6825 18 6 1.3508 -5.9674 0.9040 19 1 2.3290 -6.2334 0.5034 20 6 0.2741 -6.0435 -0.2016 21 6 -0.7104 -7.1223 0.3113 22 8 0.0716 -7.9375 1.2113 23 6 0.8932 -7.0077 1.9503 24 1 0.3093 -6.5256 2.7344 25 6 2.1030 -7.7247 2.5529 26 6 2.2896 -9.2044 2.2112 27 6 1.8342 -8.7945 3.6131 28 6 1.8006 -2.1332 1.2146 29 1 -0.3633 0.0891 1.0239 30 1 -0.3634 0.8420 -0.5890 31 1 -0.3634 -0.9312 -0.4347 32 1 -0.0178 3.0590 1.4803 33 1 0.7093 -2.0314 -1.4188 34 1 2.3723 -1.9199 -2.0871 35 1 1.4691 -4.3091 -1.1973 36 1 3.1387 -3.7999 -0.7991 37 1 -0.2319 -5.0840 -0.3086 38 1 0.7195 -6.3495 -1.1481 39 1 -1.0806 -7.7226 -0.5198 40 1 -1.5414 -6.6594 0.8437 41 1 3.0007 -7.1171 2.6672 42 1 1.5508 -9.6669 1.5568 43 1 3.3103 -9.5705 2.1004 44 1 2.5553 -8.8911 4.4248 45 1 0.7956 -8.9873 3.8817 46 1 2.5546 -2.0420 1.9965 47 1 0.8295 -1.8156 1.5943 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971978990.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:09 Heat of formation + Delta-G solvation = -40.818180 kcal Electronic energy + Delta-G solvation = -26530.376395 eV Core-core repulsion = 22907.175417 eV Total energy + Delta-G solvation = -3623.200978 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.78817 -40.18283 -38.74936 -37.37825 -36.57318 -33.92439 -33.05478 -31.21741 -30.18789 -29.41703 -28.08650 -25.99305 -24.55380 -24.03061 -23.20739 -22.78220 -21.45468 -20.87591 -20.23541 -18.96839 -18.26261 -17.57738 -17.44763 -17.02003 -16.47466 -16.34555 -15.91890 -15.56284 -15.45687 -15.06255 -14.96488 -14.68174 -14.44384 -14.02637 -13.85020 -13.51723 -13.38916 -13.13635 -12.89794 -12.76770 -12.53300 -12.43439 -12.40833 -12.34740 -12.31926 -12.20055 -12.06836 -11.96451 -11.80410 -11.42120 -11.19866 -11.12038 -10.97018 -10.66806 -10.56872 -9.68976 -8.82062 -7.84816 -5.36615 1.46555 1.47797 1.51446 1.58254 1.87642 2.49738 2.76391 2.88857 3.27902 3.42795 3.48457 3.55080 3.58232 3.83332 3.93621 3.98679 4.04973 4.08976 4.19796 4.26837 4.29748 4.35577 4.38868 4.46575 4.55681 4.66909 4.77785 4.78978 4.80941 4.83562 4.88176 4.93933 4.97755 5.02852 5.03781 5.19474 5.21334 5.22141 5.30161 5.36195 5.42896 5.63779 5.68914 5.78376 6.30279 6.52614 7.05898 7.12047 7.82081 8.26996 9.18038 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.029775 B = 0.002968 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.144918 B = 9430.241570 C = 9647.519416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.601 5.601 3 C -0.264 4.264 4 H 0.080 0.920 5 C -0.054 4.054 6 N -0.941 5.941 7 Si 0.972 3.028 8 H -0.260 1.260 9 H -0.292 1.292 10 H -0.297 1.297 11 C 0.165 3.835 12 H 0.082 0.918 13 C -0.140 4.140 14 C 0.100 3.900 15 N -0.608 5.608 16 C 0.526 3.474 17 O -0.591 6.591 18 C -0.121 4.121 19 H 0.135 0.865 20 C -0.141 4.141 21 C 0.040 3.960 22 O -0.374 6.374 23 C 0.121 3.879 24 H 0.057 0.943 25 C -0.167 4.167 26 C -0.148 4.148 27 C -0.181 4.181 28 C 0.098 3.902 29 H -0.006 1.006 30 H 0.019 0.981 31 H 0.031 0.969 32 H 0.247 0.753 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.050 0.950 41 H 0.112 0.888 42 H 0.102 0.898 43 H 0.109 0.891 44 H 0.104 0.896 45 H 0.087 0.913 46 H 0.041 0.959 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.389 -22.619 -6.984 23.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.323 5.323 3 C -0.394 4.394 4 H 0.097 0.903 5 C -0.249 4.249 6 N -0.587 5.587 7 Si 0.800 3.200 8 H -0.184 1.184 9 H -0.218 1.218 10 H -0.224 1.224 11 C 0.056 3.944 12 H 0.101 0.899 13 C -0.179 4.179 14 C -0.021 4.021 15 N -0.341 5.341 16 C 0.316 3.684 17 O -0.472 6.472 18 C -0.142 4.142 19 H 0.152 0.848 20 C -0.178 4.178 21 C -0.036 4.036 22 O -0.293 6.293 23 C 0.063 3.937 24 H 0.075 0.925 25 C -0.185 4.185 26 C -0.184 4.184 27 C -0.217 4.217 28 C -0.028 4.028 29 H 0.012 0.988 30 H 0.038 0.962 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.086 0.914 34 H 0.120 0.880 35 H 0.125 0.875 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.068 0.932 41 H 0.130 0.870 42 H 0.120 0.880 43 H 0.127 0.873 44 H 0.122 0.878 45 H 0.105 0.895 46 H 0.060 0.940 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 3.128 -22.680 -6.264 23.736 hybrid contribution -0.136 1.947 0.812 2.114 sum 2.992 -20.733 -5.453 21.646 Atomic orbital electron populations 1.20442 0.82995 0.95877 0.97076 1.44104 1.01894 1.01097 1.85177 1.19666 0.99312 0.86448 1.34019 0.90259 1.25909 0.98470 1.02299 0.98259 1.70259 1.20140 1.27758 1.40544 0.85131 0.78261 0.79733 0.76868 1.18447 1.21850 1.22408 1.21580 0.96221 0.84652 0.91919 0.89944 1.23227 1.02534 0.93423 0.98763 1.22701 1.02408 0.98392 0.78640 1.48571 1.66635 1.06189 1.12723 1.20713 0.75692 0.86535 0.85456 1.90687 1.51409 1.86401 1.18688 1.22615 1.04189 0.89878 0.97564 0.84764 1.23108 0.95441 1.00451 0.98849 1.23638 0.93500 0.92788 0.93661 1.89086 1.55801 1.30162 1.54223 1.22152 0.91168 0.87708 0.92671 0.92491 1.22260 0.98197 0.92702 1.05356 1.22915 1.03194 0.94629 0.97696 1.22995 1.02532 1.02878 0.93342 1.22471 0.99604 0.81473 0.99229 0.98751 0.96248 0.95034 0.94348 0.91392 0.88017 0.87475 0.88721 0.90561 0.85945 0.85816 0.93153 0.87014 0.87991 0.87264 0.87784 0.89470 0.94039 0.94792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.91 7.69 127.77 0.98 9.89 16 2 N -0.60 -29.02 2.94 -696.14 -2.04 -31.06 16 3 C -0.26 -14.03 9.61 84.03 0.81 -13.22 16 4 H 0.08 3.99 7.84 -2.91 -0.02 3.97 16 5 C -0.05 -3.01 5.14 84.86 0.44 -2.57 16 6 N -0.94 -56.06 10.64 21.65 0.23 -55.83 16 7 Si 0.97 44.46 29.57 68.60 2.03 46.49 16 8 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 9 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 10 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 11 C 0.16 6.17 3.43 46.18 0.16 6.33 16 12 H 0.08 3.01 7.94 -2.38 -0.02 2.99 16 13 C -0.14 -3.74 6.60 31.98 0.21 -3.53 16 14 C 0.10 2.05 6.54 86.85 0.57 2.62 16 15 N -0.61 -18.23 3.32 -811.81 -2.69 -20.92 16 16 C 0.53 16.32 7.01 87.66 0.61 16.93 16 17 O -0.59 -24.27 15.79 -3.05 -0.05 -24.32 16 18 C -0.12 -2.56 2.49 -10.52 -0.03 -2.58 16 19 H 0.13 2.19 7.87 -2.39 -0.02 2.17 16 20 C -0.14 -2.20 4.93 31.73 0.16 -2.05 16 21 C 0.04 0.68 7.64 72.60 0.55 1.23 16 22 O -0.37 -8.07 9.79 -148.98 -1.46 -9.52 16 23 C 0.12 2.90 2.98 31.10 0.09 2.99 16 24 H 0.06 1.77 6.93 -2.38 -0.02 1.75 16 25 C -0.17 -3.52 5.60 -10.79 -0.06 -3.58 16 26 C -0.15 -2.48 9.89 30.59 0.30 -2.18 16 27 C -0.18 -3.48 10.24 30.59 0.31 -3.17 16 28 C 0.10 3.82 6.51 86.73 0.56 4.38 16 29 H -0.01 -0.33 7.26 -2.38 -0.02 -0.35 16 30 H 0.02 1.01 7.33 -2.39 -0.02 0.99 16 31 H 0.03 1.32 6.20 -2.39 -0.01 1.30 16 32 H 0.25 14.37 8.31 -92.71 -0.77 13.59 16 33 H 0.07 1.97 6.21 -2.39 -0.01 1.96 16 34 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 35 H 0.11 1.54 5.47 -2.39 -0.01 1.52 16 36 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.08 1.37 7.19 -2.39 -0.02 1.35 16 38 H 0.12 1.10 7.96 -2.39 -0.02 1.08 16 39 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.11 2.35 8.13 -2.39 -0.02 2.33 16 42 H 0.10 1.80 7.07 -2.39 -0.02 1.78 16 43 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.03 1.58 7.03 -2.39 -0.02 1.56 16 Total: -1.00 -71.73 363.54 2.64 -69.09 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.95 Total: 14.58 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: 5.68 Total: 11.51 kcal Atomic # 7 Polarization: -103.31 SS G_CDS: -4.50 Total: -107.81 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -1.51 Total: -33.84 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -71.73 2.64 -69.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971978990.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.268 kcal (2) G-P(sol) polarization free energy of solvation -71.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds