Wall clock time and date at job start Fri Apr 10 2020 18:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36940 * 119.99928 * 2 1 4 4 H 1.08001 * 119.99646 * 156.72442 * 3 2 1 5 5 C 1.38802 * 120.00268 * 336.73278 * 3 2 1 6 6 N 1.31627 * 120.00037 * 330.70292 * 5 3 2 7 7 Si 1.86796 * 120.00262 * 150.98415 * 5 3 2 8 8 H 1.48499 * 109.47438 * 179.72281 * 7 5 3 9 9 H 1.48507 * 109.47147 * 299.71894 * 7 5 3 10 10 H 1.48496 * 109.47494 * 59.72157 * 7 5 3 11 11 C 1.46497 * 119.99850 * 180.02562 * 2 1 3 12 12 H 1.09010 * 110.63986 * 180.70136 * 11 2 1 13 13 C 1.55151 * 110.72055 * 303.83944 * 11 2 1 14 14 C 1.55128 * 101.48812 * 153.73825 * 13 11 2 15 15 N 1.47429 * 104.93886 * 323.22289 * 14 13 11 16 16 C 1.34779 * 125.64458 * 203.96577 * 15 14 13 17 17 O 1.21281 * 119.99391 * 180.02562 * 16 15 14 18 18 C 1.50689 * 120.00097 * 0.04570 * 16 15 14 19 19 H 1.08997 * 110.46283 * 57.39378 * 18 16 15 20 20 C 1.54512 * 110.51200 * 294.64135 * 18 16 15 21 21 C 1.54488 * 104.06249 * 241.35708 * 20 18 16 22 22 O 1.44429 * 104.80233 * 336.02166 * 21 20 18 23 23 C 1.44426 * 105.27482 * 40.50751 * 22 21 20 24 24 H 1.09001 * 110.36907 * 78.32721 * 23 22 21 25 25 C 1.53005 * 110.46566 * 200.60767 * 23 22 21 26 26 C 1.52997 * 117.49652 * 4.06245 * 25 23 22 27 27 C 1.52995 * 60.00173 * 252.51101 * 26 25 23 28 28 C 1.47016 * 108.70260 * 24.00479 * 15 14 13 29 29 H 1.09008 * 109.47264 * 92.58588 * 1 2 3 30 30 H 1.08999 * 109.47384 * 212.58395 * 1 2 3 31 31 H 1.08996 * 109.47026 * 332.59084 * 1 2 3 32 32 H 0.97001 * 119.99281 * 354.55660 * 6 5 3 33 33 H 1.09000 * 111.00796 * 271.94068 * 13 11 2 34 34 H 1.09000 * 111.00663 * 35.79255 * 13 11 2 35 35 H 1.08998 * 110.41665 * 204.29449 * 14 13 11 36 36 H 1.09001 * 110.20561 * 82.04242 * 14 13 11 37 37 H 1.08994 * 110.51005 * 359.97438 * 20 18 16 38 38 H 1.08995 * 110.51492 * 122.71547 * 20 18 16 39 39 H 1.08999 * 110.37431 * 217.19003 * 21 20 18 40 40 H 1.08999 * 110.36848 * 94.85142 * 21 20 18 41 41 H 1.08994 * 115.54556 * 149.76587 * 25 23 22 42 42 H 1.09002 * 117.49974 * 359.97438 * 26 25 23 43 43 H 1.08996 * 117.49682 * 145.01854 * 26 25 23 44 44 H 1.09004 * 117.49909 * 252.51525 * 27 26 25 45 45 H 1.08997 * 117.50210 * 107.49280 * 27 26 25 46 46 H 1.09007 * 109.88409 * 239.52113 * 28 15 14 47 47 H 1.09005 * 109.88414 * 118.35840 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1638 1.2240 0.3696 5 6 1.5404 2.3391 -0.4748 6 7 0.6163 2.2585 -1.4088 7 14 2.0372 4.0062 0.2059 8 1 1.2490 5.0703 -0.4661 9 1 1.7735 4.0429 1.6669 10 1 3.4840 4.2309 -0.0418 11 6 2.1974 -1.2687 -0.0006 12 1 3.2730 -1.0915 0.0120 13 6 1.7720 -2.1487 1.2044 14 6 2.0736 -3.5729 0.6685 15 7 1.7208 -3.5234 -0.7620 16 6 1.3826 -4.5819 -1.5247 17 8 1.1106 -4.4231 -2.6959 18 6 1.3419 -5.9624 -0.9221 19 1 0.6556 -5.9887 -0.0758 20 6 2.7572 -6.4061 -0.4891 21 6 3.0335 -7.6643 -1.3418 22 8 1.7257 -8.1726 -1.6841 23 6 0.9306 -7.0051 -1.9851 24 1 1.1595 -6.6378 -2.9855 25 6 -0.5603 -7.3279 -1.8657 26 6 -0.9434 -8.7263 -1.3772 27 6 -1.1430 -8.3478 -2.8461 28 6 1.8000 -2.1283 -1.2191 29 1 -0.3634 -0.0464 -1.0267 30 1 -0.3634 -0.8659 0.5534 31 1 -0.3633 0.9123 0.4731 32 1 0.4171 1.4035 -1.8212 33 1 2.3745 -1.9237 2.0845 34 1 0.7100 -2.0301 1.4191 35 1 1.4605 -4.3113 1.1852 36 1 3.1317 -3.8048 0.7906 37 1 3.4863 -5.6269 -0.7113 38 1 2.7720 -6.6533 0.5723 39 1 3.5874 -8.4021 -0.7612 40 1 3.5850 -7.3980 -2.2434 41 1 -1.1985 -6.4970 -1.5651 42 1 -0.1333 -9.4164 -1.1413 43 1 -1.8338 -8.8156 -0.7549 44 1 -2.1649 -8.1880 -3.1902 45 1 -0.4644 -8.7887 -3.5762 46 1 0.8300 -1.8069 -1.5988 47 1 2.5550 -2.0362 -1.9999 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971978991.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:12 Heat of formation + Delta-G solvation = -25.617226 kcal Electronic energy + Delta-G solvation = -26540.977096 eV Core-core repulsion = 22918.435281 eV Total energy + Delta-G solvation = -3622.541815 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.75149 -39.11813 -37.43771 -36.60306 -35.12767 -32.78154 -31.49609 -29.74054 -29.42567 -28.01102 -26.25852 -24.68027 -23.38692 -22.45213 -22.41202 -21.88311 -20.57834 -19.47153 -19.10860 -17.61985 -17.15180 -16.70684 -16.18849 -15.81554 -15.52764 -15.08922 -14.62105 -14.38615 -14.11540 -13.91047 -13.68003 -13.50128 -13.08485 -12.75590 -12.65980 -12.44228 -12.07499 -12.06118 -11.63301 -11.59013 -11.57035 -11.53088 -11.17538 -10.96259 -10.84647 -10.77282 -10.63092 -10.43518 -10.35016 -10.20524 -10.05262 -9.92152 -9.60979 -9.49813 -8.44851 -8.41105 -7.05761 -6.15148 -3.29322 2.67397 3.03176 3.46320 3.49855 3.57550 3.68119 3.68494 4.23781 4.36592 4.47628 4.53119 4.66438 4.78213 4.83829 4.86690 4.92457 5.05717 5.09566 5.18810 5.25371 5.32285 5.39050 5.41047 5.44762 5.54524 5.58243 5.63088 5.68286 5.72688 5.76664 5.81865 5.86068 6.00508 6.10020 6.17377 6.19662 6.35522 6.46080 6.55492 6.61210 6.70914 6.83129 7.05772 7.67460 7.89643 8.24576 8.48204 9.01120 9.75970 10.13293 11.12449 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.028273 B = 0.003018 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.110880 B = 9276.314096 C = 9687.390553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.132 3.868 2 N -0.587 5.587 3 C -0.366 4.366 4 H 0.061 0.939 5 C -0.018 4.018 6 N -0.907 5.907 7 Si 1.063 2.937 8 H -0.286 1.286 9 H -0.293 1.293 10 H -0.292 1.292 11 C 0.173 3.827 12 H 0.080 0.920 13 C -0.153 4.153 14 C 0.101 3.899 15 N -0.610 5.610 16 C 0.531 3.469 17 O -0.541 6.541 18 C -0.133 4.133 19 H 0.108 0.892 20 C -0.144 4.144 21 C 0.047 3.953 22 O -0.368 6.368 23 C 0.120 3.880 24 H 0.093 0.907 25 C -0.153 4.153 26 C -0.167 4.167 27 C -0.173 4.173 28 C 0.086 3.914 29 H 0.011 0.989 30 H 0.019 0.981 31 H 0.054 0.946 32 H 0.271 0.729 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.061 0.939 41 H 0.113 0.887 42 H 0.104 0.896 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.069 0.931 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.939 -20.675 4.635 21.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.013 4.013 2 N -0.308 5.308 3 C -0.495 4.495 4 H 0.079 0.921 5 C -0.221 4.221 6 N -0.545 5.545 7 Si 0.892 3.108 8 H -0.211 1.211 9 H -0.220 1.220 10 H -0.219 1.219 11 C 0.063 3.937 12 H 0.098 0.902 13 C -0.193 4.193 14 C -0.022 4.022 15 N -0.343 5.343 16 C 0.319 3.681 17 O -0.418 6.418 18 C -0.154 4.154 19 H 0.126 0.874 20 C -0.182 4.182 21 C -0.030 4.030 22 O -0.287 6.287 23 C 0.062 3.938 24 H 0.111 0.889 25 C -0.171 4.171 26 C -0.204 4.204 27 C -0.210 4.210 28 C -0.039 4.039 29 H 0.030 0.970 30 H 0.037 0.963 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.113 0.887 40 H 0.079 0.921 41 H 0.131 0.869 42 H 0.123 0.877 43 H 0.109 0.891 44 H 0.112 0.888 45 H 0.114 0.886 46 H 0.088 0.912 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.355 -19.170 3.889 19.608 hybrid contribution 0.447 -1.323 0.087 1.399 sum 1.802 -20.493 3.977 20.953 Atomic orbital electron populations 1.20977 0.83800 0.98737 0.97789 1.43968 1.01029 1.00649 1.85175 1.19951 1.00931 0.86555 1.42061 0.92127 1.25827 0.98691 1.02090 0.95538 1.70799 1.35075 1.28545 1.20121 0.83565 0.75459 0.75940 0.75813 1.21114 1.22003 1.21921 1.21392 0.96574 0.85721 0.90017 0.90195 1.23357 1.02756 0.93110 1.00043 1.22391 0.99851 0.99024 0.80949 1.48526 1.66944 1.07782 1.11077 1.19921 0.77011 0.85180 0.86022 1.90705 1.49433 1.85424 1.16262 1.22614 0.99269 0.93058 1.00481 0.87368 1.22940 0.95183 0.98574 1.01505 1.23383 0.86166 0.95261 0.98183 1.89093 1.21827 1.28610 1.89165 1.22344 0.89800 0.83509 0.98099 0.88901 1.22267 0.94227 0.94195 1.06388 1.22886 1.02924 0.97691 0.96870 1.22927 1.01856 1.03037 0.93183 1.22913 1.02169 0.79062 0.99740 0.97046 0.96301 0.92734 0.91795 0.90199 0.90585 0.91278 0.91511 0.89953 0.89595 0.88728 0.92071 0.86888 0.87729 0.89143 0.88823 0.88643 0.91248 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 3.05 7.89 59.85 0.47 3.53 16 2 N -0.59 -13.98 2.81 -171.39 -0.48 -14.46 16 3 C -0.37 -9.84 9.42 -15.06 -0.14 -9.98 16 4 H 0.06 1.62 7.96 -52.49 -0.42 1.20 16 5 C -0.02 -0.49 4.62 -17.43 -0.08 -0.58 16 6 N -0.91 -26.83 12.72 55.49 0.71 -26.12 16 7 Si 1.06 24.64 30.01 -169.99 -5.10 19.54 16 8 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 9 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 C 0.17 3.33 3.43 -66.10 -0.23 3.10 16 12 H 0.08 1.55 7.93 -51.92 -0.41 1.14 16 13 C -0.15 -2.29 6.64 -24.47 -0.16 -2.45 16 14 C 0.10 1.24 5.84 -2.41 -0.01 1.22 16 15 N -0.61 -9.45 3.33 -170.38 -0.57 -10.02 16 16 C 0.53 8.31 7.00 -10.99 -0.08 8.23 16 17 O -0.54 -10.58 15.78 5.56 0.09 -10.50 16 18 C -0.13 -1.54 2.31 -90.21 -0.21 -1.75 16 19 H 0.11 1.14 7.49 -51.93 -0.39 0.75 16 20 C -0.14 -1.32 5.85 -25.16 -0.15 -1.47 16 21 C 0.05 0.43 7.63 37.94 0.29 0.72 16 22 O -0.37 -4.23 9.79 -35.23 -0.34 -4.57 16 23 C 0.12 1.47 2.99 -25.95 -0.08 1.40 16 24 H 0.09 1.35 6.90 -51.93 -0.36 0.99 16 25 C -0.15 -1.73 5.60 -90.62 -0.51 -2.24 16 26 C -0.17 -1.63 9.89 -26.74 -0.26 -1.89 16 27 C -0.17 -1.77 10.24 -26.73 -0.27 -2.04 16 28 C 0.09 1.62 6.51 -3.07 -0.02 1.60 16 29 H 0.01 0.28 6.46 -51.92 -0.34 -0.05 16 30 H 0.02 0.38 6.14 -51.93 -0.32 0.06 16 31 H 0.05 1.36 7.26 -51.93 -0.38 0.99 16 32 H 0.27 8.12 6.31 -40.82 -0.26 7.86 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.08 1.21 6.14 -51.93 -0.32 0.89 16 35 H 0.07 0.70 7.42 -51.93 -0.39 0.31 16 36 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.08 0.79 7.58 -51.93 -0.39 0.40 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.11 1.30 8.13 -51.93 -0.42 0.88 16 42 H 0.10 1.06 7.07 -51.93 -0.37 0.69 16 43 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 46 H 0.07 1.51 6.83 -51.92 -0.35 1.15 16 47 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 364.50 15.07 5.49 5.49 Total: -1.00 -31.56 364.50 -9.35 -40.91 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -7.71 Total: 2.32 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -1.44 Total: -2.59 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: -0.34 Total: -50.60 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.26 Total: -15.07 kcal Atomic # 14 Polarization: 24.64 SS G_CDS: -5.10 Total: 19.54 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.56 -9.35 -40.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971978991.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.292 kcal (2) G-P(sol) polarization free energy of solvation -31.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds