Wall clock time and date at job start Fri Apr 10 2020 18:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36940 * 119.99928 * 2 1 4 4 H 1.08001 * 119.99646 * 156.72442 * 3 2 1 5 5 C 1.38802 * 120.00268 * 336.73278 * 3 2 1 6 6 N 1.31627 * 120.00037 * 330.70292 * 5 3 2 7 7 Si 1.86796 * 120.00262 * 150.98415 * 5 3 2 8 8 H 1.48499 * 109.47438 * 179.72281 * 7 5 3 9 9 H 1.48507 * 109.47147 * 299.71894 * 7 5 3 10 10 H 1.48496 * 109.47494 * 59.72157 * 7 5 3 11 11 C 1.46497 * 119.99850 * 180.02562 * 2 1 3 12 12 H 1.09010 * 110.63986 * 180.70136 * 11 2 1 13 13 C 1.55151 * 110.72055 * 303.83944 * 11 2 1 14 14 C 1.55128 * 101.48812 * 153.73825 * 13 11 2 15 15 N 1.47429 * 104.93886 * 323.22289 * 14 13 11 16 16 C 1.34779 * 125.64458 * 203.96577 * 15 14 13 17 17 O 1.21281 * 119.99391 * 180.02562 * 16 15 14 18 18 C 1.50689 * 120.00097 * 0.04570 * 16 15 14 19 19 H 1.08997 * 110.46283 * 57.39378 * 18 16 15 20 20 C 1.54512 * 110.51200 * 294.64135 * 18 16 15 21 21 C 1.54488 * 104.06249 * 241.35708 * 20 18 16 22 22 O 1.44429 * 104.80233 * 336.02166 * 21 20 18 23 23 C 1.44426 * 105.27482 * 40.50751 * 22 21 20 24 24 H 1.09001 * 110.36907 * 78.32721 * 23 22 21 25 25 C 1.53005 * 110.46566 * 200.60767 * 23 22 21 26 26 C 1.52997 * 117.49652 * 4.06245 * 25 23 22 27 27 C 1.52995 * 60.00173 * 252.51101 * 26 25 23 28 28 C 1.47016 * 108.70260 * 24.00479 * 15 14 13 29 29 H 1.09008 * 109.47264 * 92.58588 * 1 2 3 30 30 H 1.08999 * 109.47384 * 212.58395 * 1 2 3 31 31 H 1.08996 * 109.47026 * 332.59084 * 1 2 3 32 32 H 0.97001 * 119.99281 * 354.55660 * 6 5 3 33 33 H 1.09000 * 111.00796 * 271.94068 * 13 11 2 34 34 H 1.09000 * 111.00663 * 35.79255 * 13 11 2 35 35 H 1.08998 * 110.41665 * 204.29449 * 14 13 11 36 36 H 1.09001 * 110.20561 * 82.04242 * 14 13 11 37 37 H 1.08994 * 110.51005 * 359.97438 * 20 18 16 38 38 H 1.08995 * 110.51492 * 122.71547 * 20 18 16 39 39 H 1.08999 * 110.37431 * 217.19003 * 21 20 18 40 40 H 1.08999 * 110.36848 * 94.85142 * 21 20 18 41 41 H 1.08994 * 115.54556 * 149.76587 * 25 23 22 42 42 H 1.09002 * 117.49974 * 359.97438 * 26 25 23 43 43 H 1.08996 * 117.49682 * 145.01854 * 26 25 23 44 44 H 1.09004 * 117.49909 * 252.51525 * 27 26 25 45 45 H 1.08997 * 117.50210 * 107.49280 * 27 26 25 46 46 H 1.09007 * 109.88409 * 239.52113 * 28 15 14 47 47 H 1.09005 * 109.88414 * 118.35840 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1638 1.2240 0.3696 5 6 1.5404 2.3391 -0.4748 6 7 0.6163 2.2585 -1.4088 7 14 2.0372 4.0062 0.2059 8 1 1.2490 5.0703 -0.4661 9 1 1.7735 4.0429 1.6669 10 1 3.4840 4.2309 -0.0418 11 6 2.1974 -1.2687 -0.0006 12 1 3.2730 -1.0915 0.0120 13 6 1.7720 -2.1487 1.2044 14 6 2.0736 -3.5729 0.6685 15 7 1.7208 -3.5234 -0.7620 16 6 1.3826 -4.5819 -1.5247 17 8 1.1106 -4.4231 -2.6959 18 6 1.3419 -5.9624 -0.9221 19 1 0.6556 -5.9887 -0.0758 20 6 2.7572 -6.4061 -0.4891 21 6 3.0335 -7.6643 -1.3418 22 8 1.7257 -8.1726 -1.6841 23 6 0.9306 -7.0051 -1.9851 24 1 1.1595 -6.6378 -2.9855 25 6 -0.5603 -7.3279 -1.8657 26 6 -0.9434 -8.7263 -1.3772 27 6 -1.1430 -8.3478 -2.8461 28 6 1.8000 -2.1283 -1.2191 29 1 -0.3634 -0.0464 -1.0267 30 1 -0.3634 -0.8659 0.5534 31 1 -0.3633 0.9123 0.4731 32 1 0.4171 1.4035 -1.8212 33 1 2.3745 -1.9237 2.0845 34 1 0.7100 -2.0301 1.4191 35 1 1.4605 -4.3113 1.1852 36 1 3.1317 -3.8048 0.7906 37 1 3.4863 -5.6269 -0.7113 38 1 2.7720 -6.6533 0.5723 39 1 3.5874 -8.4021 -0.7612 40 1 3.5850 -7.3980 -2.2434 41 1 -1.1985 -6.4970 -1.5651 42 1 -0.1333 -9.4164 -1.1413 43 1 -1.8338 -8.8156 -0.7549 44 1 -2.1649 -8.1880 -3.1902 45 1 -0.4644 -8.7887 -3.5762 46 1 0.8300 -1.8069 -1.5988 47 1 2.5550 -2.0362 -1.9999 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971978991.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:12 Heat of formation + Delta-G solvation = -44.945606 kcal Electronic energy + Delta-G solvation = -26541.815237 eV Core-core repulsion = 22918.435281 eV Total energy + Delta-G solvation = -3623.379957 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.83206 -40.27015 -38.87199 -37.41147 -36.85399 -33.97868 -33.05321 -31.20074 -30.25176 -29.48868 -28.21896 -25.92495 -24.49417 -24.02008 -23.24086 -22.81624 -21.48484 -21.05318 -20.28330 -19.55049 -18.30763 -17.70650 -17.36602 -17.10897 -16.42802 -16.13282 -16.01075 -15.69635 -15.58637 -15.41420 -14.82884 -14.77834 -14.57049 -14.27958 -13.88414 -13.56822 -13.52488 -13.15547 -12.97345 -12.77795 -12.50367 -12.46551 -12.43137 -12.38282 -12.36053 -12.33601 -11.97925 -11.89630 -11.72257 -11.45101 -11.24611 -11.15073 -11.02840 -10.60003 -10.45919 -9.77512 -9.06058 -8.29772 -5.41931 1.45290 1.59442 1.66244 1.79903 1.85581 2.64782 2.73323 2.85407 3.15724 3.39878 3.40962 3.45236 3.51688 3.71911 3.89390 3.94957 3.98714 4.05675 4.14116 4.15235 4.25092 4.27983 4.33616 4.36342 4.52201 4.52724 4.62106 4.74495 4.77077 4.77865 4.81153 4.81894 4.89496 4.93911 4.96939 5.00542 5.04557 5.16213 5.18429 5.19701 5.32370 5.32970 5.76100 5.81011 6.32727 6.44873 6.96645 7.00875 7.72905 8.11656 8.95059 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.028273 B = 0.003018 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.110880 B = 9276.314096 C = 9687.390553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.148 3.852 2 N -0.604 5.604 3 C -0.366 4.366 4 H 0.063 0.937 5 C -0.074 4.074 6 N -0.940 5.940 7 Si 1.114 2.886 8 H -0.297 1.297 9 H -0.276 1.276 10 H -0.275 1.275 11 C 0.165 3.835 12 H 0.078 0.922 13 C -0.139 4.139 14 C 0.105 3.895 15 N -0.608 5.608 16 C 0.527 3.473 17 O -0.591 6.591 18 C -0.122 4.122 19 H 0.131 0.869 20 C -0.137 4.137 21 C 0.040 3.960 22 O -0.374 6.374 23 C 0.122 3.878 24 H 0.059 0.941 25 C -0.170 4.170 26 C -0.147 4.147 27 C -0.180 4.180 28 C 0.098 3.902 29 H -0.016 1.016 30 H 0.051 0.949 31 H 0.029 0.971 32 H 0.253 0.747 33 H 0.102 0.898 34 H 0.068 0.932 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.052 0.948 41 H 0.108 0.892 42 H 0.103 0.897 43 H 0.108 0.892 44 H 0.102 0.898 45 H 0.089 0.911 46 H 0.033 0.967 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.080 -22.870 7.839 24.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 N -0.325 5.325 3 C -0.495 4.495 4 H 0.080 0.920 5 C -0.271 4.271 6 N -0.582 5.582 7 Si 0.938 3.062 8 H -0.223 1.223 9 H -0.202 1.202 10 H -0.200 1.200 11 C 0.057 3.943 12 H 0.097 0.903 13 C -0.178 4.178 14 C -0.016 4.016 15 N -0.341 5.341 16 C 0.317 3.683 17 O -0.471 6.471 18 C -0.143 4.143 19 H 0.149 0.851 20 C -0.175 4.175 21 C -0.036 4.036 22 O -0.293 6.293 23 C 0.064 3.936 24 H 0.077 0.923 25 C -0.188 4.188 26 C -0.184 4.184 27 C -0.217 4.217 28 C -0.028 4.028 29 H 0.002 0.998 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.120 0.880 34 H 0.086 0.914 35 H 0.124 0.876 36 H 0.115 0.885 37 H 0.097 0.903 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.070 0.930 41 H 0.126 0.874 42 H 0.122 0.878 43 H 0.126 0.874 44 H 0.121 0.879 45 H 0.107 0.893 46 H 0.051 0.949 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.534 -21.425 7.142 22.726 hybrid contribution 0.147 -0.735 -0.972 1.228 sum 2.681 -22.160 6.170 23.159 Atomic orbital electron populations 1.20732 0.83848 0.98770 0.96341 1.44161 1.01293 1.01629 1.85461 1.20255 1.01065 0.87844 1.40314 0.91952 1.27193 0.98720 1.05746 0.95428 1.70932 1.37437 1.27456 1.22327 0.82878 0.75831 0.71658 0.75786 1.22347 1.20210 1.20027 1.21589 0.96093 0.84576 0.92065 0.90348 1.23237 1.02524 0.93487 0.98591 1.22659 1.02474 0.98065 0.78449 1.48563 1.66804 1.06048 1.12679 1.20733 0.75587 0.86543 0.85440 1.90688 1.51443 1.86288 1.18727 1.22613 1.01682 0.89563 1.00463 0.85134 1.23006 0.92948 0.98154 1.03393 1.23601 0.85327 0.96269 0.98404 1.89091 1.22744 1.28294 1.89162 1.22144 0.90650 0.84103 0.96749 0.92317 1.22263 0.93635 0.94942 1.07955 1.22915 1.03303 0.95891 0.96254 1.22997 1.02174 1.02774 0.93718 1.22453 0.99434 0.81752 0.99203 0.99774 0.93061 0.95226 0.93696 0.87981 0.91380 0.87552 0.88508 0.90285 0.86131 0.85770 0.92978 0.87390 0.87815 0.87394 0.87911 0.89261 0.94856 0.94218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 7.07 7.89 127.77 1.01 8.08 16 2 N -0.60 -29.11 2.81 -696.16 -1.96 -31.06 16 3 C -0.37 -19.79 9.42 84.03 0.79 -19.00 16 4 H 0.06 3.30 7.96 -2.91 -0.02 3.28 16 5 C -0.07 -4.16 4.62 84.86 0.39 -3.76 16 6 N -0.94 -57.84 12.72 21.65 0.28 -57.56 16 7 Si 1.11 50.05 30.01 68.60 2.06 52.11 16 8 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 9 H -0.28 -11.54 7.11 99.48 0.71 -10.84 16 10 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 11 C 0.17 6.25 3.43 46.18 0.16 6.41 16 12 H 0.08 2.97 7.93 -2.38 -0.02 2.96 16 13 C -0.14 -3.73 6.64 32.06 0.21 -3.51 16 14 C 0.10 2.12 5.84 86.93 0.51 2.63 16 15 N -0.61 -18.07 3.33 -811.36 -2.70 -20.77 16 16 C 0.53 16.21 7.00 87.65 0.61 16.83 16 17 O -0.59 -24.14 15.78 -3.03 -0.05 -24.19 16 18 C -0.12 -2.55 2.31 -10.53 -0.02 -2.57 16 19 H 0.13 2.20 7.49 -2.39 -0.02 2.18 16 20 C -0.14 -1.99 5.85 31.61 0.18 -1.80 16 21 C 0.04 0.63 7.63 72.49 0.55 1.18 16 22 O -0.37 -7.86 9.79 -148.98 -1.46 -9.32 16 23 C 0.12 2.89 2.99 31.10 0.09 2.99 16 24 H 0.06 1.79 6.90 -2.39 -0.02 1.78 16 25 C -0.17 -3.68 5.60 -10.79 -0.06 -3.75 16 26 C -0.15 -2.54 9.89 30.59 0.30 -2.23 16 27 C -0.18 -3.54 10.24 30.59 0.31 -3.23 16 28 C 0.10 3.79 6.51 86.73 0.56 4.36 16 29 H -0.02 -0.83 6.46 -2.38 -0.02 -0.85 16 30 H 0.05 2.06 6.14 -2.39 -0.01 2.04 16 31 H 0.03 1.52 7.26 -2.39 -0.02 1.50 16 32 H 0.25 16.06 6.31 -92.71 -0.58 15.48 16 33 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.07 1.96 6.14 -2.39 -0.01 1.95 16 35 H 0.11 1.49 7.42 -2.39 -0.02 1.47 16 36 H 0.10 1.49 8.10 -2.39 -0.02 1.47 16 37 H 0.08 1.24 7.58 -2.39 -0.02 1.22 16 38 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.11 2.42 8.13 -2.39 -0.02 2.40 16 42 H 0.10 1.84 7.07 -2.39 -0.02 1.82 16 43 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.03 1.53 6.83 -2.38 -0.02 1.51 16 47 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 Total: -1.00 -73.47 364.50 2.92 -70.55 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 1.13 Total: 17.64 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 5.61 Total: 2.61 kcal Atomic # 7 Polarization: -105.02 SS G_CDS: -4.38 Total: -109.40 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -1.51 Total: -33.51 kcal Atomic # 14 Polarization: 50.05 SS G_CDS: 2.06 Total: 52.11 kcal Total: -73.47 2.92 -70.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971978991.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.607 kcal (2) G-P(sol) polarization free energy of solvation -73.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds