Wall clock time and date at job start Fri Apr 10 2020 18:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47273 * 2 1 4 4 C 1.50704 * 109.46664 * 240.00327 * 2 1 3 5 5 O 1.21276 * 119.99868 * 262.33612 * 4 2 1 6 6 N 1.34778 * 120.00204 * 82.33750 * 4 2 1 7 7 C 1.47081 * 125.63525 * 174.51329 * 6 4 2 8 8 C 1.54460 * 107.30019 * 180.73611 * 7 6 4 9 9 C 1.54357 * 102.87234 * 21.49498 * 8 7 6 10 10 C 1.47577 * 125.62682 * 354.20576 * 6 4 2 11 11 C 1.52361 * 110.42175 * 207.61462 * 9 8 7 12 12 N 1.47335 * 108.41445 * 186.40368 * 11 9 8 13 13 C 1.36933 * 121.08100 * 229.19156 * 12 11 9 14 14 H 1.08005 * 119.99586 * 158.97076 * 13 12 11 15 15 C 1.38810 * 120.00557 * 338.96883 * 13 12 11 16 16 N 1.31622 * 119.99876 * 340.67130 * 15 13 12 17 17 Si 1.86798 * 120.00292 * 160.66145 * 15 13 12 18 18 H 1.48504 * 109.47154 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46653 * 120.00318 * 17 15 13 20 20 H 1.48500 * 109.47633 * 240.00600 * 17 15 13 21 21 C 1.47168 * 117.83497 * 49.17342 * 12 11 9 22 22 C 1.53278 * 108.57101 * 308.75935 * 21 12 11 23 23 O 1.41883 * 110.75332 * 83.65914 * 9 8 7 24 24 C 1.52992 * 109.47377 * 120.00579 * 2 1 3 25 25 C 1.53002 * 117.49940 * 248.62247 * 24 2 1 26 26 C 1.53001 * 60.00099 * 252.50703 * 25 24 2 27 27 H 1.08995 * 109.47084 * 186.38021 * 1 2 3 28 28 H 1.09004 * 109.46813 * 306.37865 * 1 2 3 29 29 H 1.09004 * 109.47591 * 66.37519 * 1 2 3 30 30 H 1.09001 * 109.87827 * 300.16805 * 7 6 4 31 31 H 1.08997 * 109.87363 * 61.16168 * 7 6 4 32 32 H 1.08998 * 110.73286 * 139.84039 * 8 7 6 33 33 H 1.09001 * 110.73529 * 263.14775 * 8 7 6 34 34 H 1.09003 * 110.37568 * 275.76459 * 10 6 4 35 35 H 1.09000 * 110.37683 * 38.11299 * 10 6 4 36 36 H 1.08996 * 109.67449 * 306.13615 * 11 9 8 37 37 H 1.09001 * 109.67660 * 66.64131 * 11 9 8 38 38 H 0.96994 * 120.00378 * 179.97438 * 16 15 13 39 39 H 1.09003 * 109.62080 * 68.48807 * 21 12 11 40 40 H 1.09004 * 109.62207 * 189.03578 * 21 12 11 41 41 H 1.08999 * 109.51277 * 172.93166 * 22 21 12 42 42 H 1.08998 * 109.51165 * 293.08643 * 22 21 12 43 43 H 1.09003 * 115.55352 * 34.32452 * 24 2 1 44 44 H 1.09006 * 117.49397 * 359.97438 * 25 24 2 45 45 H 1.08998 * 117.50602 * 145.02109 * 25 24 2 46 46 H 1.08995 * 117.49962 * 252.51370 * 26 25 24 47 47 H 1.09002 * 117.52056 * 107.47110 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 8 2.3664 -1.8743 -1.1649 6 7 2.1101 -0.0522 -2.4041 7 6 2.6846 -0.5848 -3.6489 8 6 2.5729 0.5245 -4.7179 9 6 2.4395 1.8073 -3.8696 10 6 1.6272 1.3198 -2.6539 11 6 1.6663 2.8733 -4.6359 12 7 1.6979 4.1225 -3.8554 13 6 0.5520 4.8293 -3.6057 14 1 0.5158 5.5254 -2.7807 15 6 -0.5632 4.6512 -4.4129 16 7 -0.4309 4.1217 -5.6106 17 14 -2.2517 5.1626 -3.7992 18 1 -2.1310 5.7274 -2.4311 19 1 -2.8193 6.1892 -4.7098 20 1 -3.1472 3.9783 -3.7689 21 6 3.0011 4.5857 -3.3524 22 6 3.6790 3.4267 -2.6131 23 8 3.7157 2.2796 -3.4682 24 6 2.0401 -0.7213 1.2491 25 6 2.7420 0.1225 2.3151 26 6 3.5551 -0.8282 1.4341 27 1 -0.3633 -1.0213 0.1142 28 1 -0.3633 0.6096 0.8274 29 1 -0.3634 0.4118 -0.9415 30 1 3.7316 -0.8447 -3.4924 31 1 2.1276 -1.4662 -3.9666 32 1 3.4724 0.5602 -5.3324 33 1 1.6875 0.3769 -5.3362 34 1 0.5625 1.3107 -2.8877 35 1 1.8212 1.9539 -1.7888 36 1 2.1313 3.0361 -5.6082 37 1 0.6339 2.5511 -4.7721 38 1 -1.2101 3.9969 -6.1746 39 1 3.6250 4.9013 -4.1887 40 1 2.8533 5.4204 -2.6672 41 1 4.6957 3.7122 -2.3430 42 1 3.1146 3.1905 -1.7111 43 1 1.4311 -1.5586 1.5901 44 1 2.8407 1.1915 2.1261 45 1 2.5949 -0.1595 3.3576 46 1 3.9427 -1.7356 1.8971 47 1 4.1884 -0.3850 0.6656 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972319164.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:19 Heat of formation + Delta-G solvation = -40.138859 kcal Electronic energy + Delta-G solvation = -27716.453595 eV Core-core repulsion = 24093.282074 eV Total energy + Delta-G solvation = -3623.171521 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.75121 -40.38231 -38.22122 -37.28519 -36.25199 -33.87184 -33.20871 -32.58573 -30.47091 -29.22690 -27.44307 -25.95855 -25.00115 -24.38193 -23.24617 -22.83243 -21.70312 -20.61985 -19.87089 -18.90391 -18.33631 -17.68030 -17.13749 -16.69073 -16.28965 -16.11379 -15.82771 -15.66573 -15.40648 -15.19957 -15.11647 -14.69740 -14.55174 -14.15419 -13.74057 -13.48959 -13.39093 -13.12695 -12.97373 -12.83584 -12.74246 -12.64907 -12.45332 -12.40729 -12.29234 -12.15826 -12.07906 -11.99244 -11.72712 -11.35983 -11.14444 -11.08852 -10.82469 -10.63952 -10.42039 -9.66840 -8.75643 -7.86986 -5.27555 1.47835 1.52227 1.58089 1.60345 1.91363 2.50461 2.78534 2.88008 3.25854 3.39814 3.45969 3.54702 3.68976 3.85021 3.89282 4.00570 4.10537 4.16492 4.22614 4.29661 4.31486 4.35364 4.51826 4.53922 4.61732 4.66647 4.75348 4.76226 4.77762 4.80211 4.88760 4.90783 5.00794 5.02303 5.06124 5.13006 5.14649 5.23487 5.25607 5.27058 5.30460 5.56039 5.66234 6.29548 6.39687 6.46870 7.09671 7.11225 7.79052 8.31263 9.19334 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.013899 B = 0.005091 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.000723 B = 5498.728065 C = 6062.648620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.073 4.073 3 H 0.094 0.906 4 C 0.530 3.470 5 O -0.574 6.574 6 N -0.615 5.615 7 C 0.114 3.886 8 C -0.110 4.110 9 C 0.090 3.910 10 C 0.101 3.899 11 C 0.170 3.830 12 N -0.612 5.612 13 C -0.253 4.253 14 H 0.076 0.924 15 C -0.047 4.047 16 N -0.934 5.934 17 Si 0.958 3.042 18 H -0.265 1.265 19 H -0.298 1.298 20 H -0.290 1.290 21 C 0.105 3.895 22 C 0.051 3.949 23 O -0.378 6.378 24 C -0.143 4.143 25 C -0.156 4.156 26 C -0.180 4.180 27 H 0.062 0.938 28 H 0.090 0.910 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.002 0.998 37 H 0.081 0.919 38 H 0.250 0.750 39 H 0.018 0.982 40 H 0.074 0.926 41 H 0.116 0.884 42 H 0.051 0.949 43 H 0.109 0.891 44 H 0.100 0.900 45 H 0.115 0.885 46 H 0.098 0.902 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.273 -6.604 11.222 14.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.094 4.094 3 H 0.112 0.888 4 C 0.320 3.680 5 O -0.454 6.454 6 N -0.348 5.348 7 C -0.008 4.008 8 C -0.148 4.148 9 C 0.048 3.952 10 C -0.022 4.022 11 C 0.044 3.956 12 N -0.336 5.336 13 C -0.382 4.382 14 H 0.094 0.906 15 C -0.242 4.242 16 N -0.581 5.581 17 Si 0.787 3.213 18 H -0.189 1.189 19 H -0.226 1.226 20 H -0.217 1.217 21 C -0.021 4.021 22 C -0.027 4.027 23 O -0.297 6.297 24 C -0.161 4.161 25 C -0.193 4.193 26 C -0.217 4.217 27 H 0.081 0.919 28 H 0.108 0.892 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.118 0.882 33 H 0.113 0.887 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.020 0.980 37 H 0.099 0.901 38 H 0.060 0.940 39 H 0.036 0.964 40 H 0.092 0.908 41 H 0.134 0.866 42 H 0.069 0.931 43 H 0.127 0.873 44 H 0.118 0.882 45 H 0.133 0.867 46 H 0.117 0.883 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.497 -7.341 11.177 14.458 hybrid contribution -1.129 0.612 -0.462 1.364 sum 4.368 -6.730 10.715 13.386 Atomic orbital electron populations 1.21695 0.91296 1.03104 1.03218 1.20890 0.98546 0.99510 0.90480 0.88763 1.20812 0.77077 0.86268 0.83806 1.90628 1.51467 1.17671 1.85634 1.48695 1.59690 1.16066 1.10298 1.21920 0.98667 0.96706 0.83502 1.22561 1.04702 0.90756 0.96797 1.22485 0.84454 0.94451 0.93764 1.22617 0.98225 0.81837 0.99501 1.21036 0.99371 0.84431 0.90809 1.44454 1.02833 1.23603 1.62708 1.19560 0.89671 1.20406 1.08590 0.90641 1.25541 1.01802 1.01884 0.94988 1.70166 1.29177 1.50615 1.08171 0.85346 0.80780 0.77077 0.78136 1.18914 1.22575 1.21679 1.21757 0.86956 0.96448 0.96900 1.23156 1.01923 0.85469 0.92115 1.87664 1.27282 1.46566 1.68190 1.21991 0.95693 1.02270 0.96185 1.23159 1.02008 0.97530 0.96584 1.22825 0.93526 1.02279 1.03078 0.91928 0.89165 0.92971 0.91595 0.91073 0.88151 0.88652 0.91306 0.89937 0.97964 0.90133 0.94048 0.96375 0.90759 0.86597 0.93057 0.87273 0.88167 0.86705 0.88323 0.90746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 9.15 71.98 0.66 -2.46 16 2 C -0.07 -1.87 2.28 -11.54 -0.03 -1.90 16 3 H 0.09 2.33 6.68 -2.39 -0.02 2.32 16 4 C 0.53 17.01 6.69 87.66 0.59 17.59 16 5 O -0.57 -21.55 16.28 -3.02 -0.05 -21.60 16 6 N -0.61 -19.60 3.33 -812.53 -2.71 -22.31 16 7 C 0.11 3.43 6.88 86.76 0.60 4.03 16 8 C -0.11 -3.33 6.12 31.55 0.19 -3.14 16 9 C 0.09 3.22 0.83 -10.16 -0.01 3.21 16 10 C 0.10 3.37 5.16 86.55 0.45 3.82 16 11 C 0.17 7.55 4.15 86.01 0.36 7.91 16 12 N -0.61 -28.09 3.00 -698.85 -2.10 -30.19 16 13 C -0.25 -12.68 9.70 84.03 0.82 -11.87 16 14 H 0.08 3.66 7.87 -2.91 -0.02 3.64 16 15 C -0.05 -2.43 4.95 84.86 0.42 -2.01 16 16 N -0.93 -51.59 10.95 21.65 0.24 -51.35 16 17 Si 0.96 41.91 29.60 68.60 2.03 43.94 16 18 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 19 H -0.30 -13.38 7.11 99.48 0.71 -12.67 16 20 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 21 C 0.10 3.96 6.71 86.34 0.58 4.54 16 22 C 0.05 1.59 6.78 72.08 0.49 2.08 16 23 O -0.38 -13.30 10.28 -148.95 -1.53 -14.83 16 24 C -0.14 -3.26 4.60 -10.79 -0.05 -3.31 16 25 C -0.16 -2.80 10.18 30.60 0.31 -2.49 16 26 C -0.18 -4.09 9.59 30.60 0.29 -3.79 16 27 H 0.06 1.41 8.13 -2.39 -0.02 1.39 16 28 H 0.09 1.69 8.14 -2.38 -0.02 1.68 16 29 H 0.05 1.33 7.43 -2.38 -0.02 1.31 16 30 H 0.07 1.97 8.14 -2.39 -0.02 1.96 16 31 H 0.07 2.03 8.14 -2.39 -0.02 2.02 16 32 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 33 H 0.10 2.82 8.00 -2.39 -0.02 2.80 16 34 H 0.07 2.48 7.62 -2.39 -0.02 2.46 16 35 H 0.08 2.70 4.84 -2.39 -0.01 2.69 16 36 H 0.00 0.11 8.14 -2.39 -0.02 0.10 16 37 H 0.08 4.00 5.65 -2.39 -0.01 3.98 16 38 H 0.25 13.48 8.31 -92.71 -0.77 12.71 16 39 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.07 2.60 7.94 -2.38 -0.02 2.58 16 41 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 42 H 0.05 1.56 6.25 -2.39 -0.01 1.54 16 43 H 0.11 2.45 8.11 -2.39 -0.02 2.43 16 44 H 0.10 1.70 8.05 -2.38 -0.02 1.68 16 45 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -62.29 364.82 2.49 -59.80 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: 0.95 Total: 24.33 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: 5.66 Total: 12.20 kcal Atomic # 7 Polarization: -99.27 SS G_CDS: -4.57 Total: -103.84 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -1.58 Total: -36.43 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -62.29 2.49 -59.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972319164.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.661 kcal (2) G-P(sol) polarization free energy of solvation -62.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds