Wall clock time and date at job start Fri Apr 10 2020 18:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47752 * 2 1 4 4 C 1.50698 * 109.47161 * 239.99687 * 2 1 3 5 5 O 1.21281 * 119.99844 * 274.62939 * 4 2 1 6 6 N 1.34777 * 120.00129 * 94.63497 * 4 2 1 7 7 C 1.47481 * 125.65985 * 354.12182 * 6 4 2 8 8 C 1.55025 * 104.89864 * 204.01497 * 7 6 4 9 9 C 1.54807 * 101.62682 * 323.72848 * 8 7 6 10 10 C 1.47185 * 125.66398 * 174.13506 * 6 4 2 11 11 C 1.52525 * 110.21533 * 152.89732 * 9 8 7 12 12 N 1.47311 * 108.39912 * 72.18123 * 11 9 8 13 13 C 1.36930 * 121.06236 * 229.36494 * 12 11 9 14 14 H 1.08003 * 120.00103 * 154.34487 * 13 12 11 15 15 C 1.38812 * 120.00353 * 334.34380 * 13 12 11 16 16 N 1.31616 * 119.99835 * 342.02307 * 15 13 12 17 17 Si 1.86799 * 120.00165 * 162.02912 * 15 13 12 18 18 H 1.48496 * 109.47283 * 89.99719 * 17 15 13 19 19 H 1.48504 * 109.47035 * 209.99924 * 17 15 13 20 20 H 1.48500 * 109.47146 * 329.99664 * 17 15 13 21 21 C 1.47161 * 117.86652 * 49.38992 * 12 11 9 22 22 C 1.53280 * 108.54866 * 308.86134 * 21 12 11 23 23 O 1.42066 * 110.30985 * 275.96775 * 9 8 7 24 24 C 1.53007 * 109.46623 * 119.99884 * 2 1 3 25 25 C 1.52999 * 117.49714 * 248.74322 * 24 2 1 26 26 C 1.53002 * 117.49358 * 180.08404 * 24 2 1 27 27 H 1.09009 * 109.46767 * 64.34412 * 1 2 3 28 28 H 1.08998 * 109.47571 * 184.34190 * 1 2 3 29 29 H 1.09004 * 109.47240 * 304.34959 * 1 2 3 30 30 H 1.09000 * 110.35768 * 322.87334 * 7 6 4 31 31 H 1.09001 * 110.35477 * 85.16208 * 7 6 4 32 32 H 1.08998 * 111.01266 * 81.69254 * 8 7 6 33 33 H 1.09004 * 111.01368 * 205.52790 * 8 7 6 34 34 H 1.09007 * 109.90567 * 297.86494 * 10 6 4 35 35 H 1.08994 * 109.91274 * 58.94185 * 10 6 4 36 36 H 1.08997 * 109.68007 * 191.90986 * 11 9 8 37 37 H 1.08996 * 109.67581 * 312.42229 * 11 9 8 38 38 H 0.97000 * 119.99976 * 180.02562 * 16 15 13 39 39 H 1.08999 * 109.62751 * 68.58403 * 21 12 11 40 40 H 1.09001 * 109.61980 * 188.95765 * 21 12 11 41 41 H 1.09002 * 109.50817 * 172.83181 * 22 21 12 42 42 H 1.08994 * 109.51311 * 292.98137 * 22 21 12 43 43 H 1.08997 * 115.54856 * 34.41763 * 24 2 1 44 44 H 1.09001 * 117.49937 * 359.97438 * 25 24 2 45 45 H 1.08994 * 117.49746 * 145.02662 * 25 24 2 46 46 H 1.08999 * 117.49580 * 214.97813 * 26 24 2 47 47 H 1.08997 * 117.50357 * 359.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.1545 -1.9171 -1.2265 6 7 2.3458 -0.0050 -2.3351 7 6 2.1319 1.4424 -2.5205 8 6 2.0540 1.6404 -4.0561 9 6 3.0931 0.6078 -4.5568 10 6 2.9584 -0.5511 -3.5570 11 6 2.7382 0.1439 -5.9658 12 7 3.0217 1.2445 -6.9030 13 6 2.0925 1.6433 -7.8263 14 1 2.1094 2.6535 -8.2080 15 6 1.1287 0.7492 -8.2718 16 7 1.3011 -0.5442 -8.0995 17 14 -0.4129 1.3816 -9.1161 18 1 -0.1751 1.4702 -10.5793 19 1 -1.5390 0.4499 -8.8531 20 1 -0.7503 2.7276 -8.5872 21 6 4.3357 1.9013 -6.8154 22 6 4.5827 2.3052 -5.3575 23 8 4.4000 1.1633 -4.5148 24 6 2.0398 -0.7213 1.2494 25 6 2.7391 0.1231 2.3165 26 6 3.5549 -0.8264 1.4354 27 1 -0.3633 0.4450 -0.9264 28 1 -0.3634 -1.0247 0.0778 29 1 -0.3634 0.5799 0.8485 30 1 1.1980 1.7509 -2.0506 31 1 2.9690 2.0054 -2.1076 32 1 1.0585 1.4028 -4.4308 33 1 2.3427 2.6539 -4.3346 34 1 3.9426 -0.9600 -3.3279 35 1 2.3212 -1.3302 -3.9753 36 1 3.3403 -0.7260 -6.2283 37 1 1.6804 -0.1145 -6.0116 38 1 0.6277 -1.1690 -8.4111 39 1 5.1131 1.2098 -7.1404 40 1 4.3451 2.7873 -7.4502 41 1 5.6016 2.6774 -5.2505 42 1 3.8775 3.0855 -5.0714 43 1 1.4316 -1.5594 1.5894 44 1 2.8364 1.1923 2.1284 45 1 2.5914 -0.1598 3.3587 46 1 3.9433 -1.7335 1.8983 47 1 4.1883 -0.3821 0.6676 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972319165.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:22 Heat of formation + Delta-G solvation = -24.413764 kcal Electronic energy + Delta-G solvation = -27145.073228 eV Core-core repulsion = 23522.583598 eV Total energy + Delta-G solvation = -3622.489629 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.38398 -39.10631 -37.18646 -35.97868 -34.48778 -32.63893 -31.37593 -31.04090 -29.52288 -27.49423 -25.97836 -24.55454 -23.60467 -22.71411 -22.45603 -21.66054 -20.74317 -19.05871 -18.55231 -17.27374 -17.05953 -16.15081 -15.69605 -15.27242 -15.04797 -14.78236 -14.56953 -14.39720 -14.23518 -13.75551 -13.44514 -13.06152 -12.83748 -12.73139 -12.65465 -12.51948 -12.19730 -11.92171 -11.81438 -11.67719 -11.39433 -11.18737 -11.12764 -11.00122 -10.86201 -10.70866 -10.50545 -10.33671 -10.31132 -10.27848 -9.97325 -9.57400 -9.45907 -9.07706 -8.56178 -8.41879 -6.79282 -5.88405 -3.30338 2.79705 3.06074 3.31311 3.39105 3.40209 3.72774 4.18491 4.38425 4.39564 4.56506 4.74672 4.87323 4.90755 5.01988 5.10009 5.14079 5.25294 5.33690 5.36971 5.43598 5.48575 5.56604 5.61289 5.65798 5.73742 5.77839 5.80791 5.83234 5.93575 5.96327 5.98530 6.05926 6.13704 6.14911 6.27421 6.32412 6.48542 6.49902 6.60667 6.75627 7.01855 7.40138 7.67847 7.71777 7.88582 8.27939 8.35455 9.06390 9.70103 10.27498 11.20122 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.019354 B = 0.003936 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.382114 B = 7111.884635 C = 7788.848090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.075 4.075 3 H 0.088 0.912 4 C 0.533 3.467 5 O -0.539 6.539 6 N -0.615 5.615 7 C 0.101 3.899 8 C -0.144 4.144 9 C 0.086 3.914 10 C 0.125 3.875 11 C 0.164 3.836 12 N -0.592 5.592 13 C -0.255 4.255 14 H 0.069 0.931 15 C 0.004 3.996 16 N -0.901 5.901 17 Si 0.901 3.099 18 H -0.286 1.286 19 H -0.289 1.289 20 H -0.279 1.279 21 C 0.109 3.891 22 C 0.046 3.954 23 O -0.377 6.377 24 C -0.132 4.132 25 C -0.179 4.179 26 C -0.172 4.172 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.030 0.970 37 H 0.096 0.904 38 H 0.256 0.744 39 H 0.026 0.974 40 H 0.063 0.937 41 H 0.083 0.917 42 H 0.048 0.952 43 H 0.110 0.890 44 H 0.093 0.907 45 H 0.094 0.906 46 H 0.095 0.905 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.392 5.230 16.718 17.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.097 4.097 3 H 0.106 0.894 4 C 0.321 3.679 5 O -0.416 6.416 6 N -0.349 5.349 7 C -0.022 4.022 8 C -0.182 4.182 9 C 0.045 3.955 10 C 0.003 3.997 11 C 0.038 3.962 12 N -0.316 5.316 13 C -0.384 4.384 14 H 0.086 0.914 15 C -0.195 4.195 16 N -0.545 5.545 17 Si 0.731 3.269 18 H -0.213 1.213 19 H -0.215 1.215 20 H -0.204 1.204 21 C -0.018 4.018 22 C -0.032 4.032 23 O -0.296 6.296 24 C -0.150 4.150 25 C -0.216 4.216 26 C -0.209 4.209 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.048 0.952 37 H 0.114 0.886 38 H 0.066 0.934 39 H 0.044 0.956 40 H 0.081 0.919 41 H 0.101 0.899 42 H 0.066 0.934 43 H 0.128 0.872 44 H 0.112 0.888 45 H 0.113 0.887 46 H 0.113 0.887 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.466 4.326 16.820 17.430 hybrid contribution -0.883 0.446 -0.788 1.265 sum 0.583 4.772 16.032 16.737 Atomic orbital electron populations 1.21688 0.92236 1.03108 1.02507 1.20859 0.97800 0.99499 0.91518 0.89366 1.20213 0.77397 0.87216 0.83050 1.90680 1.53701 1.13996 1.83207 1.48634 1.61549 1.09663 1.15035 1.22406 1.00581 0.81147 0.98056 1.23229 1.01248 1.01261 0.92445 1.22693 0.83012 0.92130 0.97689 1.21761 0.98605 0.95777 0.83583 1.21177 1.02271 0.89724 0.83050 1.44075 1.11103 1.39172 1.37261 1.19133 1.06776 0.94719 1.17784 0.91365 1.25017 1.00579 0.94932 0.98963 1.70024 1.34370 1.00341 1.49748 0.86321 0.83121 0.78084 0.79411 1.21319 1.21466 1.20431 1.21590 0.89178 0.97104 0.93889 1.23098 1.00028 0.87799 0.92226 1.87669 1.30001 1.46259 1.65716 1.22012 0.95676 1.01560 0.95793 1.23072 1.04770 0.97520 0.96215 1.22897 0.93805 1.01509 1.02713 0.91986 0.91660 0.91354 0.91046 0.91561 0.89546 0.89359 0.90872 0.89757 0.95231 0.88597 0.93414 0.95600 0.91895 0.89934 0.93389 0.87193 0.88815 0.88711 0.88680 0.89020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.16 37.15 0.34 -1.05 16 2 C -0.08 -0.87 2.30 -91.77 -0.21 -1.08 16 3 H 0.09 0.90 6.94 -51.93 -0.36 0.54 16 4 C 0.53 8.39 6.49 -10.99 -0.07 8.32 16 5 O -0.54 -10.40 16.78 5.56 0.09 -10.31 16 6 N -0.61 -9.73 3.33 -170.68 -0.57 -10.30 16 7 C 0.10 1.37 6.17 -2.44 -0.02 1.35 16 8 C -0.14 -2.36 5.93 -24.71 -0.15 -2.50 16 9 C 0.09 1.62 0.84 -89.57 -0.08 1.55 16 10 C 0.13 2.26 6.24 -3.33 -0.02 2.24 16 11 C 0.16 3.78 3.96 -3.84 -0.02 3.77 16 12 N -0.59 -14.18 2.95 -172.17 -0.51 -14.69 16 13 C -0.25 -6.66 9.65 -15.06 -0.15 -6.80 16 14 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 15 C 0.00 0.11 4.92 -17.43 -0.09 0.02 16 16 N -0.90 -25.40 11.20 55.49 0.62 -24.78 16 17 Si 0.90 20.92 29.59 -169.99 -5.03 15.89 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 C 0.11 2.19 6.72 -3.54 -0.02 2.16 16 22 C 0.05 0.78 6.77 37.30 0.25 1.03 16 23 O -0.38 -7.05 10.22 -35.23 -0.36 -7.41 16 24 C -0.13 -1.44 4.66 -90.62 -0.42 -1.87 16 25 C -0.18 -1.57 10.18 -26.69 -0.27 -1.84 16 26 C -0.17 -1.89 9.87 -26.69 -0.26 -2.15 16 27 H 0.06 0.63 7.86 -51.92 -0.41 0.23 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.80 7.44 -51.93 -0.39 0.42 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.09 1.53 7.86 -51.93 -0.41 1.12 16 33 H 0.09 1.42 6.00 -51.93 -0.31 1.11 16 34 H 0.07 1.35 8.06 -51.93 -0.42 0.93 16 35 H 0.08 1.62 7.79 -51.93 -0.40 1.21 16 36 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.10 2.44 6.01 -51.93 -0.31 2.13 16 38 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 1.19 7.96 -51.93 -0.41 0.78 16 41 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.05 0.77 6.14 -51.93 -0.32 0.46 16 43 H 0.11 1.21 8.11 -51.93 -0.42 0.79 16 44 H 0.09 0.75 8.05 -51.93 -0.42 0.33 16 45 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 366.97 15.07 5.53 5.53 Total: -1.00 -30.58 366.97 -9.33 -39.92 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -7.94 Total: 3.00 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -1.18 Total: 3.15 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: -0.46 Total: -49.77 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.27 Total: -17.72 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.58 -9.33 -39.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972319165.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.503 kcal (2) G-P(sol) polarization free energy of solvation -30.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds