Wall clock time and date at job start Fri Apr 10 2020 18:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47752 * 2 1 4 4 C 1.50698 * 109.47161 * 239.99687 * 2 1 3 5 5 O 1.21281 * 119.99844 * 274.62939 * 4 2 1 6 6 N 1.34777 * 120.00129 * 94.63497 * 4 2 1 7 7 C 1.47481 * 125.65985 * 354.12182 * 6 4 2 8 8 C 1.55025 * 104.89864 * 204.01497 * 7 6 4 9 9 C 1.54807 * 101.62682 * 323.72848 * 8 7 6 10 10 C 1.47185 * 125.66398 * 174.13506 * 6 4 2 11 11 C 1.52525 * 110.21533 * 152.89732 * 9 8 7 12 12 N 1.47311 * 108.39912 * 72.18123 * 11 9 8 13 13 C 1.36930 * 121.06236 * 229.36494 * 12 11 9 14 14 H 1.08003 * 120.00103 * 154.34487 * 13 12 11 15 15 C 1.38812 * 120.00353 * 334.34380 * 13 12 11 16 16 N 1.31616 * 119.99835 * 342.02307 * 15 13 12 17 17 Si 1.86799 * 120.00165 * 162.02912 * 15 13 12 18 18 H 1.48496 * 109.47283 * 89.99719 * 17 15 13 19 19 H 1.48504 * 109.47035 * 209.99924 * 17 15 13 20 20 H 1.48500 * 109.47146 * 329.99664 * 17 15 13 21 21 C 1.47161 * 117.86652 * 49.38992 * 12 11 9 22 22 C 1.53280 * 108.54866 * 308.86134 * 21 12 11 23 23 O 1.42066 * 110.30985 * 275.96775 * 9 8 7 24 24 C 1.53007 * 109.46623 * 119.99884 * 2 1 3 25 25 C 1.52999 * 117.49714 * 248.74322 * 24 2 1 26 26 C 1.53002 * 117.49358 * 180.08404 * 24 2 1 27 27 H 1.09009 * 109.46767 * 64.34412 * 1 2 3 28 28 H 1.08998 * 109.47571 * 184.34190 * 1 2 3 29 29 H 1.09004 * 109.47240 * 304.34959 * 1 2 3 30 30 H 1.09000 * 110.35768 * 322.87334 * 7 6 4 31 31 H 1.09001 * 110.35477 * 85.16208 * 7 6 4 32 32 H 1.08998 * 111.01266 * 81.69254 * 8 7 6 33 33 H 1.09004 * 111.01368 * 205.52790 * 8 7 6 34 34 H 1.09007 * 109.90567 * 297.86494 * 10 6 4 35 35 H 1.08994 * 109.91274 * 58.94185 * 10 6 4 36 36 H 1.08997 * 109.68007 * 191.90986 * 11 9 8 37 37 H 1.08996 * 109.67581 * 312.42229 * 11 9 8 38 38 H 0.97000 * 119.99976 * 180.02562 * 16 15 13 39 39 H 1.08999 * 109.62751 * 68.58403 * 21 12 11 40 40 H 1.09001 * 109.61980 * 188.95765 * 21 12 11 41 41 H 1.09002 * 109.50817 * 172.83181 * 22 21 12 42 42 H 1.08994 * 109.51311 * 292.98137 * 22 21 12 43 43 H 1.08997 * 115.54856 * 34.41763 * 24 2 1 44 44 H 1.09001 * 117.49937 * 359.97438 * 25 24 2 45 45 H 1.08994 * 117.49746 * 145.02662 * 25 24 2 46 46 H 1.08999 * 117.49580 * 214.97813 * 26 24 2 47 47 H 1.08997 * 117.50357 * 359.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.1545 -1.9171 -1.2265 6 7 2.3458 -0.0050 -2.3351 7 6 2.1319 1.4424 -2.5205 8 6 2.0540 1.6404 -4.0561 9 6 3.0931 0.6078 -4.5568 10 6 2.9584 -0.5511 -3.5570 11 6 2.7382 0.1439 -5.9658 12 7 3.0217 1.2445 -6.9030 13 6 2.0925 1.6433 -7.8263 14 1 2.1094 2.6535 -8.2080 15 6 1.1287 0.7492 -8.2718 16 7 1.3011 -0.5442 -8.0995 17 14 -0.4129 1.3816 -9.1161 18 1 -0.1751 1.4702 -10.5793 19 1 -1.5390 0.4499 -8.8531 20 1 -0.7503 2.7276 -8.5872 21 6 4.3357 1.9013 -6.8154 22 6 4.5827 2.3052 -5.3575 23 8 4.4000 1.1633 -4.5148 24 6 2.0398 -0.7213 1.2494 25 6 2.7391 0.1231 2.3165 26 6 3.5549 -0.8264 1.4354 27 1 -0.3633 0.4450 -0.9264 28 1 -0.3634 -1.0247 0.0778 29 1 -0.3634 0.5799 0.8485 30 1 1.1980 1.7509 -2.0506 31 1 2.9690 2.0054 -2.1076 32 1 1.0585 1.4028 -4.4308 33 1 2.3427 2.6539 -4.3346 34 1 3.9426 -0.9600 -3.3279 35 1 2.3212 -1.3302 -3.9753 36 1 3.3403 -0.7260 -6.2283 37 1 1.6804 -0.1145 -6.0116 38 1 0.6277 -1.1690 -8.4111 39 1 5.1131 1.2098 -7.1404 40 1 4.3451 2.7873 -7.4502 41 1 5.6016 2.6774 -5.2505 42 1 3.8775 3.0855 -5.0714 43 1 1.4316 -1.5594 1.5894 44 1 2.8364 1.1923 2.1284 45 1 2.5914 -0.1598 3.3587 46 1 3.9433 -1.7335 1.8983 47 1 4.1883 -0.3821 0.6676 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972319165.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:21 Heat of formation + Delta-G solvation = -42.964092 kcal Electronic energy + Delta-G solvation = -27145.877630 eV Core-core repulsion = 23522.583598 eV Total energy + Delta-G solvation = -3623.294032 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.71062 -40.44488 -38.19866 -37.36332 -36.27192 -33.68515 -33.24700 -32.40368 -30.88154 -29.12834 -27.61363 -25.68027 -25.15808 -24.01920 -23.25264 -23.11204 -21.89027 -20.51917 -19.79185 -18.96990 -18.39602 -17.59443 -17.05223 -16.63217 -16.31471 -16.17302 -15.94609 -15.71774 -15.51607 -15.23191 -15.10816 -14.56880 -14.40543 -14.07705 -13.74468 -13.63616 -13.47857 -13.13571 -13.05503 -12.82475 -12.73223 -12.64218 -12.49630 -12.39310 -12.34078 -12.18847 -12.04290 -11.84109 -11.80510 -11.38557 -11.15810 -11.09308 -10.81439 -10.58442 -10.46249 -9.73057 -8.74930 -7.90931 -5.36295 1.46019 1.48131 1.57409 1.58323 1.85490 2.47602 2.74153 2.88679 3.22108 3.36263 3.55201 3.58363 3.63462 3.90905 3.94003 3.96824 4.18332 4.20472 4.24280 4.30542 4.35134 4.37904 4.49989 4.51812 4.56802 4.60870 4.68373 4.76086 4.79328 4.87121 4.88184 4.94357 5.02637 5.04098 5.08665 5.14301 5.16654 5.20131 5.25000 5.25801 5.33908 5.47845 5.61366 6.27773 6.37056 6.51460 7.04846 7.11583 7.74751 8.29509 9.15610 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.019354 B = 0.003936 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.382114 B = 7111.884635 C = 7788.848090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.066 4.066 3 H 0.113 0.887 4 C 0.527 3.473 5 O -0.584 6.584 6 N -0.616 5.616 7 C 0.108 3.892 8 C -0.137 4.137 9 C 0.097 3.903 10 C 0.130 3.870 11 C 0.176 3.824 12 N -0.608 5.608 13 C -0.258 4.258 14 H 0.077 0.923 15 C -0.050 4.050 16 N -0.938 5.938 17 Si 0.966 3.034 18 H -0.287 1.287 19 H -0.297 1.297 20 H -0.263 1.263 21 C 0.101 3.899 22 C 0.053 3.947 23 O -0.382 6.382 24 C -0.148 4.148 25 C -0.146 4.146 26 C -0.193 4.193 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.063 0.937 35 H 0.059 0.941 36 H -0.012 1.012 37 H 0.065 0.935 38 H 0.249 0.751 39 H 0.011 0.989 40 H 0.076 0.924 41 H 0.120 0.880 42 H 0.065 0.935 43 H 0.103 0.897 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.092 0.908 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.071 8.666 19.053 20.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.087 4.087 3 H 0.131 0.869 4 C 0.317 3.683 5 O -0.464 6.464 6 N -0.349 5.349 7 C -0.013 4.013 8 C -0.175 4.175 9 C 0.055 3.945 10 C 0.006 3.994 11 C 0.049 3.951 12 N -0.332 5.332 13 C -0.388 4.388 14 H 0.095 0.905 15 C -0.246 4.246 16 N -0.584 5.584 17 Si 0.794 3.206 18 H -0.214 1.214 19 H -0.223 1.223 20 H -0.187 1.187 21 C -0.024 4.024 22 C -0.024 4.024 23 O -0.302 6.302 24 C -0.166 4.166 25 C -0.182 4.182 26 C -0.231 4.231 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.117 0.883 30 H 0.123 0.877 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.118 0.882 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.006 0.994 37 H 0.084 0.916 38 H 0.058 0.942 39 H 0.029 0.971 40 H 0.095 0.905 41 H 0.138 0.862 42 H 0.083 0.917 43 H 0.122 0.878 44 H 0.129 0.871 45 H 0.130 0.870 46 H 0.111 0.889 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.164 7.819 19.170 20.736 hybrid contribution -0.680 -0.662 -1.588 1.850 sum 0.484 7.157 17.582 18.989 Atomic orbital electron populations 1.21714 0.90924 1.02846 1.03811 1.20919 0.98683 0.99997 0.89088 0.86915 1.21179 0.76277 0.86929 0.83884 1.90656 1.55528 1.16244 1.84000 1.48743 1.61181 1.10817 1.14199 1.22547 1.03277 0.79601 0.95897 1.23131 0.99125 1.00651 0.94634 1.22312 0.84175 0.93219 0.94802 1.21480 0.97837 0.95259 0.84847 1.20875 0.99572 0.88692 0.85942 1.44340 1.12514 1.39182 1.37200 1.19518 1.06955 0.94951 1.17353 0.90506 1.25788 1.03446 0.94995 1.00326 1.70203 1.35061 1.01575 1.51596 0.85303 0.79300 0.77885 0.78145 1.21383 1.22321 1.18731 1.21821 0.86813 0.96866 0.96885 1.23199 1.02714 0.87307 0.89212 1.87674 1.29623 1.47075 1.65803 1.22045 0.95411 1.02526 0.96664 1.23170 1.01004 0.97792 0.96264 1.22905 0.93781 1.02630 1.03747 0.92053 0.93117 0.88284 0.87685 0.89289 0.91346 0.88247 0.91829 0.92304 0.99376 0.91631 0.94174 0.97088 0.90538 0.86200 0.91685 0.87841 0.87109 0.86967 0.88948 0.90371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.16 71.98 0.66 -1.71 16 2 C -0.07 -1.36 2.30 -11.54 -0.03 -1.39 16 3 H 0.11 1.78 6.94 -2.39 -0.02 1.76 16 4 C 0.53 16.31 6.49 87.66 0.57 16.88 16 5 O -0.58 -23.28 16.78 -3.03 -0.05 -23.33 16 6 N -0.62 -19.05 3.33 -812.31 -2.71 -21.76 16 7 C 0.11 2.60 6.17 86.88 0.54 3.13 16 8 C -0.14 -4.29 5.93 31.90 0.19 -4.10 16 9 C 0.10 3.65 0.84 -10.11 -0.01 3.65 16 10 C 0.13 4.87 6.24 86.47 0.54 5.41 16 11 C 0.18 8.52 3.96 86.07 0.34 8.86 16 12 N -0.61 -29.54 2.95 -698.63 -2.06 -31.61 16 13 C -0.26 -13.54 9.65 84.03 0.81 -12.73 16 14 H 0.08 3.84 7.89 -2.91 -0.02 3.81 16 15 C -0.05 -2.74 4.92 84.86 0.42 -2.32 16 16 N -0.94 -55.36 11.20 21.65 0.24 -55.12 16 17 Si 0.97 43.54 29.59 68.60 2.03 45.57 16 18 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 19 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 20 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 21 C 0.10 4.00 6.72 86.35 0.58 4.58 16 22 C 0.05 1.64 6.77 72.08 0.49 2.12 16 23 O -0.38 -13.79 10.22 -148.97 -1.52 -15.31 16 24 C -0.15 -2.94 4.66 -10.79 -0.05 -3.00 16 25 C -0.15 -2.04 10.18 30.62 0.31 -1.73 16 26 C -0.19 -3.99 9.87 30.62 0.30 -3.69 16 27 H 0.06 1.08 7.86 -2.38 -0.02 1.06 16 28 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.11 1.88 7.44 -2.39 -0.02 1.86 16 31 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.07 2.39 7.86 -2.39 -0.02 2.37 16 33 H 0.10 2.89 6.00 -2.38 -0.01 2.87 16 34 H 0.06 2.47 8.06 -2.38 -0.02 2.45 16 35 H 0.06 2.47 7.79 -2.39 -0.02 2.45 16 36 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 37 H 0.07 3.56 6.01 -2.39 -0.01 3.55 16 38 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 39 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.08 2.77 7.96 -2.39 -0.02 2.75 16 41 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 42 H 0.07 1.84 6.14 -2.39 -0.01 1.83 16 43 H 0.10 2.17 8.11 -2.39 -0.02 2.15 16 44 H 0.11 1.22 8.05 -2.39 -0.02 1.20 16 45 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -70.35 366.97 2.53 -67.82 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: 0.94 Total: 19.76 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: 5.66 Total: 13.97 kcal Atomic # 7 Polarization: -103.96 SS G_CDS: -4.53 Total: -108.48 kcal Atomic # 8 Polarization: -37.06 SS G_CDS: -1.57 Total: -38.64 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -70.35 2.53 -67.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972319165.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.854 kcal (2) G-P(sol) polarization free energy of solvation -70.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds