Wall clock time and date at job start Fri Apr 10 2020 17:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 119.99939 * 2 1 4 4 H 1.48505 * 109.47051 * 270.00361 * 3 2 1 5 5 H 1.48495 * 109.47036 * 30.00239 * 3 2 1 6 6 H 1.48500 * 109.46962 * 150.00184 * 3 2 1 7 7 C 1.38807 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00144 * 197.12012 * 7 2 1 9 9 N 1.36932 * 120.00398 * 17.11988 * 7 2 1 10 10 C 1.47207 * 121.32708 * 206.84745 * 9 7 2 11 11 C 1.52777 * 107.85895 * 237.94924 * 10 9 7 12 12 C 1.51218 * 111.19044 * 303.02065 * 11 10 9 13 13 H 1.09006 * 111.36090 * 286.93537 * 12 11 10 14 14 C 1.55911 * 107.09998 * 163.07129 * 12 11 10 15 15 N 1.47639 * 104.41671 * 281.75844 * 14 12 11 16 16 C 1.34777 * 125.73274 * 155.06080 * 15 14 12 17 17 O 1.21290 * 119.99742 * 0.02562 * 16 15 14 18 18 C 1.50694 * 120.00163 * 179.97438 * 16 15 14 19 19 C 1.53002 * 109.47176 * 180.02562 * 18 16 15 20 20 H 1.09001 * 110.33369 * 305.70581 * 19 18 16 21 21 C 1.54479 * 110.37303 * 183.45366 * 19 18 16 22 22 C 1.54516 * 104.06282 * 217.19127 * 21 19 18 23 23 C 1.54483 * 104.06181 * 359.97438 * 22 21 19 24 24 O 1.44425 * 110.37343 * 67.95447 * 19 18 16 25 25 C 1.46128 * 108.37825 * 335.95454 * 15 14 12 26 26 C 1.53326 * 107.12618 * 359.12353 * 25 15 14 27 27 H 1.09002 * 108.89876 * 270.11782 * 26 25 15 28 28 C 1.46720 * 121.32416 * 26.87081 * 9 7 2 29 29 H 0.97002 * 120.00295 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.79229 * 357.55746 * 10 9 7 31 31 H 1.09003 * 109.78894 * 118.34609 * 10 9 7 32 32 H 1.09008 * 109.20863 * 62.65081 * 11 10 9 33 33 H 1.08995 * 109.20988 * 181.96601 * 11 10 9 34 34 H 1.08999 * 110.44625 * 40.49348 * 14 12 11 35 35 H 1.09000 * 110.44111 * 163.02687 * 14 12 11 36 36 H 1.08994 * 109.47538 * 300.00126 * 18 16 15 37 37 H 1.09001 * 109.47090 * 60.00752 * 18 16 15 38 38 H 1.08995 * 110.51134 * 335.83427 * 21 19 18 39 39 H 1.09001 * 110.51166 * 98.55143 * 21 19 18 40 40 H 1.08996 * 110.51345 * 118.64460 * 22 21 19 41 41 H 1.09001 * 110.50917 * 241.21913 * 22 21 19 42 42 H 1.09000 * 110.36987 * 142.81028 * 23 22 21 43 43 H 1.09009 * 110.37016 * 265.03667 * 23 22 21 44 44 H 1.09003 * 109.10171 * 240.00187 * 25 15 14 45 45 H 1.08997 * 110.34732 * 118.93556 * 25 15 14 46 46 H 1.08998 * 109.15979 * 248.06805 * 28 9 7 47 47 H 1.09001 * 109.16395 * 7.24838 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0544 -1.2230 0.2748 9 7 1.3711 -2.3616 -0.3501 10 6 1.8192 -3.6669 0.1621 11 6 2.1490 -4.5530 -1.0380 12 6 0.9589 -4.6881 -1.9611 13 1 0.1921 -5.3310 -1.5288 14 6 1.4952 -5.2174 -3.3260 15 7 2.0814 -4.0288 -3.9766 16 6 3.0520 -4.0416 -4.9116 17 8 3.5188 -5.0963 -5.2868 18 6 3.5564 -2.7455 -5.4918 19 6 4.6474 -3.0390 -6.5236 20 1 5.4317 -3.6533 -6.0812 21 6 5.2402 -1.7209 -7.0692 22 6 5.5008 -2.0166 -8.5633 23 6 5.0352 -3.4785 -8.7434 24 8 4.0834 -3.6984 -7.6781 25 6 1.4454 -2.8374 -3.4185 26 6 0.4082 -3.3164 -2.3959 27 1 -0.5456 -3.4632 -2.9027 28 6 0.2127 -2.3524 -1.2505 29 1 -0.4851 0.8400 0.0004 30 1 2.7079 -3.5358 0.7793 31 1 1.0247 -4.1246 0.7515 32 1 2.9710 -4.1070 -1.5981 33 1 2.4505 -5.5387 -0.6839 34 1 2.2583 -5.9790 -3.1658 35 1 0.6781 -5.6164 -3.9272 36 1 2.7332 -2.2184 -5.9740 37 1 3.9672 -2.1260 -4.6945 38 1 4.5243 -0.9063 -6.9603 39 1 6.1732 -1.4817 -6.5589 40 1 4.9137 -1.3481 -9.1930 41 1 6.5622 -1.9211 -8.7920 42 1 4.5554 -3.6071 -9.7136 43 1 5.8799 -4.1606 -8.6452 44 1 0.9534 -2.2869 -4.2205 45 1 2.1871 -2.2050 -2.9307 46 1 -0.6778 -2.6380 -0.6907 47 1 0.0768 -1.3468 -1.6484 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087894599.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:06 Heat of formation + Delta-G solvation = -60.822566 kcal Electronic energy + Delta-G solvation = -26926.080340 eV Core-core repulsion = 23302.011906 eV Total energy + Delta-G solvation = -3624.068433 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.32421 -39.40099 -37.91889 -35.22596 -32.85215 -32.33255 -31.72218 -30.81252 -30.43588 -27.67602 -26.47513 -25.48764 -23.68497 -22.31384 -21.64360 -21.32074 -20.91080 -19.00833 -18.41421 -17.12249 -16.72240 -16.23275 -15.92297 -15.79677 -15.40090 -14.85014 -14.67409 -14.07144 -13.81292 -13.60760 -13.58620 -13.42965 -12.90822 -12.62596 -12.33527 -12.13352 -12.04360 -11.94004 -11.82072 -11.69089 -11.33600 -11.25015 -11.14374 -11.03089 -10.78869 -10.76861 -10.59740 -10.49060 -10.23025 -9.94351 -9.76739 -9.54598 -9.46413 -9.41897 -8.53854 -8.24030 -6.73586 -5.84810 -3.26140 2.94065 3.29082 3.32522 3.40632 3.41456 3.82666 4.43378 4.43974 4.53567 4.74818 4.80777 4.97962 5.03777 5.07094 5.13138 5.25185 5.34112 5.35500 5.39773 5.47912 5.55377 5.62266 5.64491 5.67007 5.74093 5.79268 5.83241 5.93238 5.97774 5.99981 6.10803 6.15711 6.32830 6.43585 6.49984 6.57815 6.69695 6.71999 6.81698 6.83837 6.99326 7.23511 7.55812 7.73953 7.88535 8.37465 8.47031 9.15277 9.78223 10.37856 11.23878 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.013735 B = 0.004353 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.055564 B = 6431.440808 C = 7901.127393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.004 3.996 3 Si 0.899 3.101 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.249 4.249 8 H 0.066 0.934 9 N -0.589 5.589 10 C 0.143 3.857 11 C -0.127 4.127 12 C -0.087 4.087 13 H 0.087 0.913 14 C 0.108 3.892 15 N -0.613 5.613 16 C 0.530 3.470 17 O -0.544 6.544 18 C -0.133 4.133 19 C 0.093 3.907 20 H 0.075 0.925 21 C -0.153 4.153 22 C -0.155 4.155 23 C 0.043 3.957 24 O -0.359 6.359 25 C 0.110 3.890 26 C -0.110 4.110 27 H 0.064 0.936 28 C 0.177 3.823 29 H 0.254 0.746 30 H 0.054 0.946 31 H 0.021 0.979 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.083 0.917 46 H 0.024 0.976 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.122 -4.819 -12.471 14.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.195 4.195 3 Si 0.729 3.271 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.378 4.378 8 H 0.084 0.916 9 N -0.311 5.311 10 C 0.017 3.983 11 C -0.166 4.166 12 C -0.107 4.107 13 H 0.105 0.895 14 C -0.015 4.015 15 N -0.347 5.347 16 C 0.319 3.681 17 O -0.422 6.422 18 C -0.173 4.173 19 C 0.035 3.965 20 H 0.093 0.907 21 C -0.191 4.191 22 C -0.192 4.192 23 C -0.034 4.034 24 O -0.278 6.278 25 C -0.013 4.013 26 C -0.131 4.131 27 H 0.083 0.917 28 C 0.051 3.949 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.039 0.961 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.118 0.882 37 H 0.127 0.873 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.106 0.894 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.101 0.899 46 H 0.042 0.958 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.128 -5.319 -12.726 15.093 hybrid contribution 0.492 1.094 -0.021 1.200 sum 6.621 -4.225 -12.748 14.973 Atomic orbital electron populations 1.70020 1.05193 1.25523 1.53930 1.25000 0.95246 0.98260 1.00988 0.86331 0.79190 0.83827 0.77707 1.21448 1.21759 1.20464 1.19156 0.92610 0.84611 1.41448 0.91629 1.44001 1.34814 1.01284 1.51038 1.20879 0.97488 0.87109 0.92830 1.21629 0.97303 0.99316 0.98393 1.21937 0.98099 0.96811 0.93806 0.89513 1.22564 0.97264 0.88406 0.93265 1.48369 1.37833 1.09054 1.39431 1.20087 0.78414 0.91161 0.78442 1.90682 1.57968 1.33021 1.60500 1.21753 1.00008 0.96606 0.98933 1.22696 0.94594 0.91980 0.87237 0.90661 1.23030 1.01985 0.98466 0.95642 1.22931 1.01963 0.97602 0.96753 1.23380 0.93033 0.94883 0.92122 1.89263 1.43297 1.75973 1.19240 1.21788 0.96542 0.87328 0.95614 1.22080 0.96694 0.96456 0.97841 0.91724 1.20137 0.89044 0.97997 0.87758 0.93592 0.92749 0.96129 0.92293 0.93215 0.91020 0.92251 0.88211 0.87340 0.90266 0.90265 0.90743 0.90675 0.89390 0.92451 0.92580 0.89877 0.95817 0.89054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.78 11.17 55.49 0.62 -24.16 16 2 C 0.00 0.10 4.94 -17.43 -0.09 0.01 16 3 Si 0.90 20.65 29.59 -169.99 -5.03 15.62 16 4 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 7 C -0.25 -6.42 9.67 -15.06 -0.15 -6.56 16 8 H 0.07 1.69 7.89 -52.48 -0.41 1.27 16 9 N -0.59 -13.70 2.89 -173.84 -0.50 -14.20 16 10 C 0.14 2.85 6.53 -3.77 -0.02 2.83 16 11 C -0.13 -2.16 4.99 -27.74 -0.14 -2.30 16 12 C -0.09 -1.39 3.54 -89.40 -0.32 -1.70 16 13 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 14 C 0.11 1.68 6.19 -1.86 -0.01 1.67 16 15 N -0.61 -10.10 2.89 -171.04 -0.49 -10.59 16 16 C 0.53 9.00 7.77 -10.99 -0.09 8.92 16 17 O -0.54 -10.87 15.83 -3.88 -0.06 -10.93 16 18 C -0.13 -1.80 4.54 -27.88 -0.13 -1.93 16 19 C 0.09 1.20 2.75 -25.95 -0.07 1.13 16 20 H 0.08 1.03 7.96 -51.93 -0.41 0.62 16 21 C -0.15 -1.49 6.63 -25.16 -0.17 -1.66 16 22 C -0.15 -1.33 7.09 -25.16 -0.18 -1.51 16 23 C 0.04 0.45 7.63 37.94 0.29 0.74 16 24 O -0.36 -5.27 10.83 -44.66 -0.48 -5.75 16 25 C 0.11 1.83 5.42 -4.07 -0.02 1.81 16 26 C -0.11 -1.91 2.77 -90.91 -0.25 -2.16 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 C 0.18 3.85 4.67 -4.94 -0.02 3.83 16 29 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 30 H 0.05 1.08 7.96 -51.93 -0.41 0.67 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 1.10 7.15 -51.92 -0.37 0.73 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 1.15 7.87 -51.93 -0.41 0.74 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.08 0.74 7.87 -51.93 -0.41 0.33 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.08 1.55 7.90 -51.93 -0.41 1.14 16 46 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.09 2.23 6.03 -51.93 -0.31 1.91 16 LS Contribution 362.56 15.07 5.46 5.46 Total: -1.00 -30.46 362.56 -10.05 -40.51 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -8.21 Total: 0.93 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -1.36 Total: 3.10 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: -0.38 Total: -48.96 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.55 Total: -16.68 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.03 Total: 15.62 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.46 -10.05 -40.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087894599.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.308 kcal (2) G-P(sol) polarization free energy of solvation -30.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds