Wall clock time and date at job start Fri Apr 10 2020 17:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 119.99939 * 2 1 4 4 H 1.48505 * 109.47051 * 270.00361 * 3 2 1 5 5 H 1.48495 * 109.47036 * 30.00239 * 3 2 1 6 6 H 1.48500 * 109.46962 * 150.00184 * 3 2 1 7 7 C 1.38807 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00144 * 197.12012 * 7 2 1 9 9 N 1.36932 * 120.00398 * 17.11988 * 7 2 1 10 10 C 1.47207 * 121.32708 * 206.84745 * 9 7 2 11 11 C 1.52777 * 107.85895 * 237.94924 * 10 9 7 12 12 C 1.51218 * 111.19044 * 303.02065 * 11 10 9 13 13 H 1.09006 * 111.36090 * 286.93537 * 12 11 10 14 14 C 1.55911 * 107.09998 * 163.07129 * 12 11 10 15 15 N 1.47639 * 104.41671 * 281.75844 * 14 12 11 16 16 C 1.34777 * 125.73274 * 155.06080 * 15 14 12 17 17 O 1.21290 * 119.99742 * 0.02562 * 16 15 14 18 18 C 1.50694 * 120.00163 * 179.97438 * 16 15 14 19 19 C 1.53002 * 109.47176 * 180.02562 * 18 16 15 20 20 H 1.09001 * 110.33369 * 305.70581 * 19 18 16 21 21 C 1.54479 * 110.37303 * 183.45366 * 19 18 16 22 22 C 1.54516 * 104.06282 * 217.19127 * 21 19 18 23 23 C 1.54483 * 104.06181 * 359.97438 * 22 21 19 24 24 O 1.44425 * 110.37343 * 67.95447 * 19 18 16 25 25 C 1.46128 * 108.37825 * 335.95454 * 15 14 12 26 26 C 1.53326 * 107.12618 * 359.12353 * 25 15 14 27 27 H 1.09002 * 108.89876 * 270.11782 * 26 25 15 28 28 C 1.46720 * 121.32416 * 26.87081 * 9 7 2 29 29 H 0.97002 * 120.00295 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.79229 * 357.55746 * 10 9 7 31 31 H 1.09003 * 109.78894 * 118.34609 * 10 9 7 32 32 H 1.09008 * 109.20863 * 62.65081 * 11 10 9 33 33 H 1.08995 * 109.20988 * 181.96601 * 11 10 9 34 34 H 1.08999 * 110.44625 * 40.49348 * 14 12 11 35 35 H 1.09000 * 110.44111 * 163.02687 * 14 12 11 36 36 H 1.08994 * 109.47538 * 300.00126 * 18 16 15 37 37 H 1.09001 * 109.47090 * 60.00752 * 18 16 15 38 38 H 1.08995 * 110.51134 * 335.83427 * 21 19 18 39 39 H 1.09001 * 110.51166 * 98.55143 * 21 19 18 40 40 H 1.08996 * 110.51345 * 118.64460 * 22 21 19 41 41 H 1.09001 * 110.50917 * 241.21913 * 22 21 19 42 42 H 1.09000 * 110.36987 * 142.81028 * 23 22 21 43 43 H 1.09009 * 110.37016 * 265.03667 * 23 22 21 44 44 H 1.09003 * 109.10171 * 240.00187 * 25 15 14 45 45 H 1.08997 * 110.34732 * 118.93556 * 25 15 14 46 46 H 1.08998 * 109.15979 * 248.06805 * 28 9 7 47 47 H 1.09001 * 109.16395 * 7.24838 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0544 -1.2230 0.2748 9 7 1.3711 -2.3616 -0.3501 10 6 1.8192 -3.6669 0.1621 11 6 2.1490 -4.5530 -1.0380 12 6 0.9589 -4.6881 -1.9611 13 1 0.1921 -5.3310 -1.5288 14 6 1.4952 -5.2174 -3.3260 15 7 2.0814 -4.0288 -3.9766 16 6 3.0520 -4.0416 -4.9116 17 8 3.5188 -5.0963 -5.2868 18 6 3.5564 -2.7455 -5.4918 19 6 4.6474 -3.0390 -6.5236 20 1 5.4317 -3.6533 -6.0812 21 6 5.2402 -1.7209 -7.0692 22 6 5.5008 -2.0166 -8.5633 23 6 5.0352 -3.4785 -8.7434 24 8 4.0834 -3.6984 -7.6781 25 6 1.4454 -2.8374 -3.4185 26 6 0.4082 -3.3164 -2.3959 27 1 -0.5456 -3.4632 -2.9027 28 6 0.2127 -2.3524 -1.2505 29 1 -0.4851 0.8400 0.0004 30 1 2.7079 -3.5358 0.7793 31 1 1.0247 -4.1246 0.7515 32 1 2.9710 -4.1070 -1.5981 33 1 2.4505 -5.5387 -0.6839 34 1 2.2583 -5.9790 -3.1658 35 1 0.6781 -5.6164 -3.9272 36 1 2.7332 -2.2184 -5.9740 37 1 3.9672 -2.1260 -4.6945 38 1 4.5243 -0.9063 -6.9603 39 1 6.1732 -1.4817 -6.5589 40 1 4.9137 -1.3481 -9.1930 41 1 6.5622 -1.9211 -8.7920 42 1 4.5554 -3.6071 -9.7136 43 1 5.8799 -4.1606 -8.6452 44 1 0.9534 -2.2869 -4.2205 45 1 2.1871 -2.2050 -2.9307 46 1 -0.6778 -2.6380 -0.6907 47 1 0.0768 -1.3468 -1.6484 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087894599.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:05 Heat of formation + Delta-G solvation = -77.840056 kcal Electronic energy + Delta-G solvation = -26926.818274 eV Core-core repulsion = 23302.011906 eV Total energy + Delta-G solvation = -3624.806367 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.64163 -40.44744 -39.26582 -36.86598 -34.44397 -33.41456 -32.72936 -32.33626 -31.97323 -29.09020 -27.60553 -27.12524 -25.19500 -23.38431 -23.17980 -22.59143 -21.85918 -20.36265 -19.91170 -18.67036 -18.05792 -17.45398 -17.13473 -16.82778 -16.68630 -16.32686 -15.96152 -15.62257 -15.25611 -15.10517 -14.82230 -14.57172 -14.43326 -13.88002 -13.83240 -13.45583 -13.32558 -13.17487 -12.99731 -12.80996 -12.78618 -12.62209 -12.48869 -12.29001 -12.25641 -12.08592 -12.02983 -11.94567 -11.61527 -11.49589 -11.05207 -11.01924 -10.83807 -10.71508 -10.48704 -9.59414 -8.63283 -7.83025 -5.26278 1.49816 1.52198 1.59768 1.62868 2.03359 2.54809 2.94836 3.29858 3.43811 3.62634 3.66647 3.72058 3.74400 3.92320 3.96578 4.01803 4.15820 4.20618 4.29585 4.40693 4.47687 4.56055 4.57493 4.60555 4.67431 4.72571 4.74239 4.84373 4.89271 4.90376 4.96278 4.97759 5.10289 5.12332 5.17231 5.18932 5.19297 5.21247 5.36228 5.44357 5.59875 5.68239 5.79569 5.93893 6.42728 6.55691 7.15336 7.20054 7.90132 8.44860 9.23396 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.013735 B = 0.004353 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.055564 B = 6431.440808 C = 7901.127393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.042 4.042 3 Si 0.958 3.042 4 H -0.281 1.281 5 H -0.298 1.298 6 H -0.274 1.274 7 C -0.255 4.255 8 H 0.062 0.938 9 N -0.605 5.605 10 C 0.141 3.859 11 C -0.115 4.115 12 C -0.081 4.081 13 H 0.108 0.892 14 C 0.110 3.890 15 N -0.613 5.613 16 C 0.524 3.476 17 O -0.578 6.578 18 C -0.129 4.129 19 C 0.090 3.910 20 H 0.059 0.941 21 C -0.149 4.149 22 C -0.148 4.148 23 C 0.034 3.966 24 O -0.394 6.394 25 C 0.120 3.880 26 C -0.107 4.107 27 H 0.084 0.916 28 C 0.189 3.811 29 H 0.250 0.750 30 H 0.049 0.951 31 H 0.023 0.977 32 H 0.041 0.959 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.110 0.890 37 H 0.120 0.880 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.059 0.941 44 H 0.072 0.928 45 H 0.061 0.939 46 H 0.002 0.998 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.846 -4.805 -13.661 16.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.237 4.237 3 Si 0.786 3.214 4 H -0.208 1.208 5 H -0.225 1.225 6 H -0.199 1.199 7 C -0.385 4.385 8 H 0.080 0.920 9 N -0.328 5.328 10 C 0.015 3.985 11 C -0.154 4.154 12 C -0.099 4.099 13 H 0.126 0.874 14 C -0.012 4.012 15 N -0.346 5.346 16 C 0.315 3.685 17 O -0.458 6.458 18 C -0.169 4.169 19 C 0.032 3.968 20 H 0.077 0.923 21 C -0.187 4.187 22 C -0.185 4.185 23 C -0.043 4.043 24 O -0.313 6.313 25 C -0.002 4.002 26 C -0.127 4.127 27 H 0.102 0.898 28 C 0.063 3.937 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.041 0.959 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.128 0.872 37 H 0.138 0.862 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.102 0.898 41 H 0.113 0.887 42 H 0.118 0.882 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.079 0.921 46 H 0.020 0.980 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.865 -5.322 -13.917 16.406 hybrid contribution 0.272 1.019 0.402 1.128 sum 7.136 -4.304 -13.516 15.879 Atomic orbital electron populations 1.70157 1.06407 1.25736 1.55428 1.25615 0.95874 1.00871 1.01382 0.85416 0.78043 0.80165 0.77734 1.20779 1.22522 1.19878 1.19380 0.92638 0.85822 1.40663 0.92041 1.44226 1.34981 1.01828 1.51788 1.20992 0.97198 0.86212 0.94090 1.21482 0.97240 0.99638 0.97050 1.21940 0.98013 0.96125 0.93870 0.87398 1.22587 0.97557 0.88065 0.93022 1.48434 1.37739 1.09217 1.39238 1.20684 0.77918 0.91881 0.78051 1.90660 1.59014 1.34496 1.61643 1.21811 1.00644 0.94997 0.99431 1.22728 0.93873 0.93329 0.86920 0.92263 1.23029 1.02527 0.96720 0.96390 1.22925 1.03330 0.96254 0.96003 1.23613 0.92696 0.96334 0.91648 1.89218 1.44870 1.76711 1.20520 1.21600 0.95743 0.87160 0.95737 1.21898 0.98091 0.96208 0.96508 0.89753 1.19888 0.87815 0.97510 0.88471 0.94110 0.93220 0.95903 0.94006 0.90695 0.91320 0.90738 0.87177 0.86215 0.89663 0.88904 0.89754 0.88745 0.88169 0.92293 0.91015 0.92074 0.98021 0.91980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.03 11.17 21.65 0.24 -51.79 16 2 C -0.04 -2.20 4.94 84.86 0.42 -1.78 16 3 Si 0.96 42.61 29.59 68.60 2.03 44.64 16 4 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.25 -13.25 9.67 84.03 0.81 -12.43 16 8 H 0.06 3.18 7.89 -2.91 -0.02 3.16 16 9 N -0.60 -28.28 2.89 -703.91 -2.03 -30.31 16 10 C 0.14 5.51 6.53 86.17 0.56 6.07 16 11 C -0.12 -3.73 4.99 29.94 0.15 -3.58 16 12 C -0.08 -2.38 3.54 -10.00 -0.04 -2.42 16 13 H 0.11 2.80 8.14 -2.38 -0.02 2.78 16 14 C 0.11 3.20 6.19 87.17 0.54 3.74 16 15 N -0.61 -19.38 2.89 -813.43 -2.35 -21.73 16 16 C 0.52 17.42 7.77 87.66 0.68 18.10 16 17 O -0.58 -22.98 15.83 5.96 0.09 -22.89 16 18 C -0.13 -3.38 4.54 29.85 0.14 -3.24 16 19 C 0.09 2.24 2.75 31.10 0.09 2.32 16 20 H 0.06 1.63 7.96 -2.39 -0.02 1.61 16 21 C -0.15 -2.59 6.63 31.61 0.21 -2.38 16 22 C -0.15 -2.17 7.09 31.61 0.22 -1.95 16 23 C 0.03 0.65 7.63 72.49 0.55 1.21 16 24 O -0.39 -11.29 10.83 -139.96 -1.52 -12.81 16 25 C 0.12 3.87 5.42 86.56 0.47 4.34 16 26 C -0.11 -3.56 2.77 -10.98 -0.03 -3.59 16 27 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 28 C 0.19 8.27 4.67 85.68 0.40 8.67 16 29 H 0.25 13.61 8.31 -92.71 -0.77 12.84 16 30 H 0.05 1.96 7.96 -2.39 -0.02 1.94 16 31 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.04 1.51 7.15 -2.38 -0.02 1.49 16 33 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.07 2.07 7.87 -2.39 -0.02 2.05 16 35 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 37 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 38 H 0.08 1.38 7.87 -2.39 -0.02 1.36 16 39 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 44 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.06 2.26 7.90 -2.39 -0.02 2.24 16 46 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 47 H 0.06 3.08 6.03 -2.39 -0.01 3.07 16 Total: -1.00 -66.16 362.56 2.57 -63.58 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 0.93 Total: 18.20 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: 5.18 Total: 13.09 kcal Atomic # 7 Polarization: -99.69 SS G_CDS: -4.14 Total: -103.83 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: -1.42 Total: -35.70 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -66.16 2.57 -63.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087894599.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.256 kcal (2) G-P(sol) polarization free energy of solvation -66.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds