Wall clock time and date at job start Fri Apr 10 2020 17:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00102 * 2 1 4 4 H 1.48499 * 109.47082 * 265.65255 * 3 2 1 5 5 H 1.48496 * 109.46946 * 25.64970 * 3 2 1 6 6 H 1.48499 * 109.46928 * 145.65477 * 3 2 1 7 7 C 1.38812 * 119.99886 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99607 * 338.29797 * 7 2 1 9 9 N 1.36935 * 120.00073 * 158.30169 * 7 2 1 10 10 C 1.44531 * 117.26983 * 146.57355 * 9 7 2 11 11 C 1.51336 * 113.06722 * 150.90962 * 10 9 7 12 12 C 1.47899 * 114.90491 * 34.48008 * 11 10 9 13 13 H 1.09000 * 108.92612 * 188.35927 * 12 11 10 14 14 C 1.55950 * 114.09117 * 66.48359 * 12 11 10 15 15 N 1.48098 * 103.72228 * 195.59605 * 14 12 11 16 16 C 1.34775 * 125.74503 * 204.29327 * 15 14 12 17 17 O 1.21283 * 120.00147 * 5.02413 * 16 15 14 18 18 C 1.50694 * 119.99993 * 185.02469 * 16 15 14 19 19 H 1.09002 * 109.52492 * 334.27644 * 18 16 15 20 20 C 1.53178 * 109.52461 * 214.15300 * 18 16 15 21 21 C 1.53178 * 109.03883 * 183.11384 * 20 18 16 22 22 C 1.53090 * 109.16526 * 56.97827 * 21 20 18 23 23 O 1.42898 * 109.41421 * 302.39456 * 22 21 20 24 24 C 1.42908 * 114.10131 * 61.15635 * 23 22 21 25 25 C 1.47459 * 108.50848 * 24.31737 * 15 14 12 26 26 C 1.54405 * 114.73968 * 310.91318 * 12 11 10 27 27 H 1.09005 * 112.97865 * 285.58428 * 26 12 11 28 28 C 1.44403 * 117.27155 * 326.55175 * 9 7 2 29 29 H 0.97005 * 120.00191 * 359.97438 * 1 2 3 30 30 H 1.09004 * 108.74301 * 271.79648 * 10 9 7 31 31 H 1.08999 * 108.75013 * 30.02082 * 10 9 7 32 32 H 1.09008 * 108.47083 * 156.35035 * 11 10 9 33 33 H 1.08999 * 108.47452 * 273.73583 * 11 10 9 34 34 H 1.09003 * 110.58162 * 76.96726 * 14 12 11 35 35 H 1.08998 * 110.52386 * 314.20389 * 14 12 11 36 36 H 1.08998 * 109.54342 * 302.97984 * 20 18 16 37 37 H 1.08998 * 109.54171 * 63.24562 * 20 18 16 38 38 H 1.09000 * 109.52097 * 176.88511 * 21 20 18 39 39 H 1.09000 * 109.52160 * 297.00859 * 21 20 18 40 40 H 1.09009 * 109.47862 * 62.37646 * 22 21 20 41 41 H 1.08993 * 109.48501 * 182.40583 * 22 21 20 42 42 H 1.08994 * 109.48059 * 178.85434 * 24 23 22 43 43 H 1.09001 * 109.47684 * 58.82263 * 24 23 22 44 44 H 1.08997 * 110.03923 * 242.79240 * 25 15 14 45 45 H 1.09003 * 110.04140 * 121.34282 * 25 15 14 46 46 H 1.08998 * 108.74206 * 335.63401 * 28 9 7 47 47 H 1.09002 * 108.74660 * 93.84893 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5896 1.9933 -1.3960 5 1 1.4047 2.6774 0.6060 6 1 3.4988 1.4683 0.7899 7 6 2.0102 -1.2022 -0.0005 8 1 1.5275 -2.1045 0.3449 9 7 3.3068 -1.2440 -0.4390 10 6 4.1933 -2.1870 0.2043 11 6 5.2989 -2.6771 -0.7055 12 6 5.8035 -1.6743 -1.6684 13 1 6.4820 -2.1646 -2.3665 14 6 6.5432 -0.4717 -1.0061 15 7 6.5991 0.5428 -2.0836 16 6 7.5011 1.5396 -2.1805 17 8 8.4177 1.6071 -1.3891 18 6 7.3707 2.5702 -3.2721 19 1 6.8283 2.1417 -4.1149 20 6 8.7647 3.0093 -3.7307 21 6 8.6200 4.1120 -4.7840 22 6 7.8117 5.2695 -4.1921 23 8 6.5389 4.7867 -3.7575 24 6 6.6107 3.7873 -2.7385 25 6 5.5014 0.2791 -3.0322 26 6 4.7071 -0.9353 -2.4659 27 1 4.2565 -1.5531 -3.2428 28 6 3.6739 -0.3427 -1.5058 29 1 -0.4851 0.8401 0.0004 30 1 4.6421 -1.7082 1.0746 31 1 3.6094 -3.0444 0.5392 32 1 6.1297 -3.0171 -0.0871 33 1 4.9259 -3.5285 -1.2747 34 1 7.5481 -0.7618 -0.6993 35 1 5.9761 -0.0965 -0.1542 36 1 9.3257 3.3913 -2.8777 37 1 9.2910 2.1585 -4.1634 38 1 9.6077 4.4691 -5.0757 39 1 8.1034 3.7152 -5.6580 40 1 8.3496 5.6917 -3.3431 41 1 7.6689 6.0388 -4.9509 42 1 5.6028 3.4889 -2.4504 43 1 7.1328 4.1901 -1.8706 44 1 5.9068 0.0352 -4.0141 45 1 4.8508 1.1509 -3.1024 46 1 2.7780 -0.0853 -2.0707 47 1 4.0855 0.5674 -1.0693 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087905394.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:09 Heat of formation + Delta-G solvation = -58.788206 kcal Electronic energy + Delta-G solvation = -27427.709307 eV Core-core repulsion = 23803.729090 eV Total energy + Delta-G solvation = -3623.980217 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.74494 -39.53923 -38.15994 -35.66906 -33.85542 -33.20357 -31.74155 -31.28055 -30.84815 -27.79926 -25.71465 -25.24258 -24.88512 -23.76203 -22.34745 -21.46988 -20.77317 -19.12432 -18.34048 -17.20303 -16.73912 -16.52392 -16.40124 -16.05387 -15.42071 -15.12603 -14.86751 -14.51026 -14.25398 -13.86256 -13.79900 -13.50951 -13.30837 -13.09357 -12.91168 -12.82887 -12.58695 -12.37503 -12.22739 -11.83404 -11.60810 -11.36383 -11.23258 -11.17954 -10.93568 -10.66322 -10.63207 -10.47484 -10.32632 -10.02948 -9.96759 -9.71012 -9.57451 -9.49721 -8.59196 -8.53929 -6.87372 -6.02686 -3.43733 2.54509 2.93427 3.29106 3.46331 3.50669 3.63506 4.30157 4.44167 4.48316 4.55990 4.61186 4.63135 4.69219 4.86668 4.95040 4.98498 5.06129 5.13957 5.29891 5.33569 5.36819 5.45234 5.47072 5.52851 5.55760 5.58619 5.63419 5.67460 5.73330 5.80570 5.84268 5.98296 5.99665 6.01862 6.16415 6.19427 6.32640 6.41911 6.54858 6.70485 6.71503 6.86695 6.89944 7.53436 8.05250 8.12732 8.33959 9.03459 9.71464 9.98526 11.13113 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.016156 B = 0.004933 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.711898 B = 5674.773021 C = 6850.545252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.036 3.964 3 Si 0.880 3.120 4 H -0.285 1.285 5 H -0.302 1.302 6 H -0.277 1.277 7 C -0.279 4.279 8 H 0.082 0.918 9 N -0.599 5.599 10 C 0.160 3.840 11 C -0.117 4.117 12 C -0.082 4.082 13 H 0.069 0.931 14 C 0.109 3.891 15 N -0.614 5.614 16 C 0.535 3.465 17 O -0.544 6.544 18 C -0.140 4.140 19 H 0.099 0.901 20 C -0.105 4.105 21 C -0.154 4.154 22 C 0.056 3.944 23 O -0.374 6.374 24 C 0.074 3.926 25 C 0.100 3.900 26 C -0.108 4.108 27 H 0.102 0.898 28 C 0.151 3.849 29 H 0.264 0.736 30 H 0.012 0.988 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.052 0.948 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.060 0.940 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.066 0.934 47 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.396 3.764 -10.285 19.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.165 4.165 3 Si 0.710 3.290 4 H -0.212 1.212 5 H -0.230 1.230 6 H -0.202 1.202 7 C -0.407 4.407 8 H 0.100 0.900 9 N -0.322 5.322 10 C 0.035 3.965 11 C -0.155 4.155 12 C -0.102 4.102 13 H 0.088 0.912 14 C -0.012 4.012 15 N -0.348 5.348 16 C 0.323 3.677 17 O -0.422 6.422 18 C -0.161 4.161 19 H 0.117 0.883 20 C -0.143 4.143 21 C -0.192 4.192 22 C -0.021 4.021 23 O -0.292 6.292 24 C -0.003 4.003 25 C -0.024 4.024 26 C -0.128 4.128 27 H 0.120 0.880 28 C 0.025 3.975 29 H 0.074 0.926 30 H 0.030 0.970 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.070 0.930 41 H 0.114 0.886 42 H 0.118 0.882 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.084 0.916 47 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 16.646 4.017 -9.934 19.797 hybrid contribution 0.590 0.849 0.067 1.036 sum 17.237 4.866 -9.866 20.448 Atomic orbital electron populations 1.69854 1.05884 1.26772 1.51799 1.25379 0.95101 0.97554 0.98441 0.87032 0.79598 0.84567 0.77761 1.21156 1.23023 1.20237 1.18958 0.86247 0.94716 1.40787 0.90025 1.43029 1.09261 1.43230 1.36698 1.19983 0.90503 0.93079 0.92959 1.20327 0.99092 0.97968 0.98136 1.21144 0.96504 0.94859 0.97667 0.91233 1.22682 1.00655 0.87455 0.90453 1.48741 1.29861 1.29401 1.26798 1.20022 0.80913 0.81056 0.85677 1.90678 1.32550 1.74933 1.44013 1.21961 0.99778 0.96122 0.98271 0.88305 1.21466 0.94663 0.98874 0.99315 1.22203 1.01186 0.96754 0.99056 1.22645 0.84818 0.95678 0.98975 1.87990 1.28512 1.56029 1.56715 1.22427 1.01297 0.86480 0.90093 1.22601 0.88327 0.99267 0.92179 1.22864 0.96130 0.95075 0.98759 0.88018 1.20821 0.96204 0.91795 0.88729 0.92636 0.97033 0.92952 0.91832 0.91802 0.90650 0.90517 0.90367 0.91160 0.90428 0.90850 0.92951 0.88646 0.88228 0.92126 0.91380 0.90862 0.91583 0.97163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.14 13.97 55.49 0.78 -26.37 16 2 C 0.04 1.01 5.05 -17.43 -0.09 0.92 16 3 Si 0.88 22.36 24.19 -169.99 -4.11 18.25 16 4 H -0.28 -6.81 6.69 56.52 0.38 -6.43 16 5 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 6 H -0.28 -7.14 7.08 56.52 0.40 -6.74 16 7 C -0.28 -7.60 9.60 -15.06 -0.14 -7.74 16 8 H 0.08 2.39 7.98 -52.48 -0.42 1.97 16 9 N -0.60 -13.67 2.85 -177.44 -0.51 -14.17 16 10 C 0.16 3.06 5.95 -5.93 -0.04 3.02 16 11 C -0.12 -1.71 5.37 -30.04 -0.16 -1.87 16 12 C -0.08 -1.18 2.74 -90.78 -0.25 -1.43 16 13 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 14 C 0.11 1.73 5.90 -1.59 -0.01 1.72 16 15 N -0.61 -9.39 3.34 -168.04 -0.56 -9.95 16 16 C 0.54 8.24 6.86 -10.99 -0.08 8.17 16 17 O -0.54 -9.97 16.46 5.55 0.09 -9.88 16 18 C -0.14 -1.72 2.43 -91.64 -0.22 -1.94 16 19 H 0.10 1.10 7.05 -51.93 -0.37 0.74 16 20 C -0.11 -1.11 5.01 -26.55 -0.13 -1.24 16 21 C -0.15 -1.29 6.14 -26.59 -0.16 -1.45 16 22 C 0.06 0.51 6.84 37.20 0.25 0.77 16 23 O -0.37 -4.69 10.77 -35.23 -0.38 -5.07 16 24 C 0.07 0.96 6.11 37.20 0.23 1.19 16 25 C 0.10 1.37 5.09 -2.04 -0.01 1.36 16 26 C -0.11 -1.68 3.95 -88.41 -0.35 -2.03 16 27 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 28 C 0.15 3.11 2.83 -5.17 -0.01 3.09 16 29 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.05 1.00 7.85 -51.93 -0.41 0.59 16 32 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 33 H 0.06 0.89 8.13 -51.93 -0.42 0.46 16 34 H 0.08 1.15 8.02 -51.93 -0.42 0.73 16 35 H 0.08 1.42 7.10 -51.93 -0.37 1.05 16 36 H 0.08 0.91 7.76 -51.93 -0.40 0.51 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 41 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.07 0.75 8.05 -51.93 -0.42 0.33 16 45 H 0.07 1.04 7.74 -51.93 -0.40 0.64 16 46 H 0.07 1.50 6.53 -51.93 -0.34 1.16 16 47 H 0.01 0.24 4.08 -51.93 -0.21 0.03 16 LS Contribution 350.48 15.07 5.28 5.28 Total: -1.00 -32.16 350.48 -8.57 -40.73 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -7.98 Total: -1.35 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -1.17 Total: 2.52 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: -0.29 Total: -50.48 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.29 Total: -14.95 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.11 Total: 18.25 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.16 -8.57 -40.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087905394.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.062 kcal (2) G-P(sol) polarization free energy of solvation -32.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds