Wall clock time and date at job start Fri Apr 10 2020 17:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99729 * 2 1 4 4 H 1.48501 * 109.47114 * 267.13133 * 3 2 1 5 5 H 1.48500 * 109.47312 * 27.13466 * 3 2 1 6 6 H 1.48507 * 109.47093 * 147.13318 * 3 2 1 7 7 C 1.38812 * 120.00189 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99707 * 347.48868 * 7 2 1 9 9 N 1.36932 * 120.00090 * 167.48897 * 7 2 1 10 10 C 1.47206 * 121.32470 * 327.63884 * 9 7 2 11 11 C 1.52780 * 107.80458 * 237.98468 * 10 9 7 12 12 C 1.53068 * 110.80902 * 302.26708 * 11 10 9 13 13 H 1.09002 * 112.49910 * 288.18396 * 12 11 10 14 14 C 1.55906 * 106.86153 * 163.75643 * 12 11 10 15 15 N 1.47648 * 104.42179 * 283.01616 * 14 12 11 16 16 C 1.34781 * 125.73217 * 155.05083 * 15 14 12 17 17 O 1.21283 * 119.99947 * 354.84993 * 16 15 14 18 18 C 1.50696 * 119.99925 * 174.84351 * 16 15 14 19 19 H 1.09003 * 109.51940 * 32.76395 * 18 16 15 20 20 C 1.53180 * 109.52078 * 152.88860 * 18 16 15 21 21 C 1.53180 * 109.03691 * 176.88777 * 20 18 16 22 22 C 1.53096 * 109.15862 * 303.02363 * 21 20 18 23 23 O 1.42900 * 109.41744 * 57.60849 * 22 21 20 24 24 C 1.42901 * 114.09537 * 298.83705 * 23 22 21 25 25 C 1.47452 * 108.53609 * 335.03704 * 15 14 12 26 26 C 1.53328 * 106.45004 * 0.54863 * 25 15 14 27 27 H 1.09005 * 108.90583 * 268.41906 * 26 25 15 28 28 C 1.45484 * 121.03870 * 148.20101 * 9 7 2 29 29 H 0.96998 * 120.00414 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.79484 * 118.40842 * 10 9 7 31 31 H 1.09001 * 109.84030 * 357.58358 * 10 9 7 32 32 H 1.08993 * 109.21099 * 181.92918 * 11 10 9 33 33 H 1.09003 * 109.17699 * 62.58732 * 11 10 9 34 34 H 1.08999 * 110.44270 * 41.75039 * 14 12 11 35 35 H 1.09004 * 110.44731 * 164.28086 * 14 12 11 36 36 H 1.09003 * 109.54258 * 296.75757 * 20 18 16 37 37 H 1.09006 * 109.54206 * 57.02088 * 20 18 16 38 38 H 1.08998 * 109.52075 * 62.92336 * 21 20 18 39 39 H 1.08993 * 109.51981 * 183.11582 * 21 20 18 40 40 H 1.09004 * 109.47449 * 177.59252 * 22 21 20 41 41 H 1.09000 * 109.47912 * 297.62143 * 22 21 20 42 42 H 1.08995 * 109.48412 * 301.17764 * 24 23 22 43 43 H 1.09003 * 109.47680 * 181.14126 * 24 23 22 44 44 H 1.08998 * 110.05846 * 241.30528 * 25 15 14 45 45 H 1.08992 * 110.06468 * 119.79647 * 25 15 14 46 46 H 1.08998 * 109.64724 * 6.93482 * 28 9 7 47 47 H 1.09004 * 107.96750 * 248.17444 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.5583 2.0114 -1.3983 5 1 1.4186 2.6694 0.6385 6 1 3.5161 1.4585 0.7598 7 6 2.0103 -1.2021 -0.0005 8 1 1.4895 -2.1264 0.2017 9 7 3.3552 -1.2161 -0.2574 10 6 3.9697 -0.2405 -1.1727 11 6 4.6668 -1.0199 -2.2867 12 6 5.7090 -1.9803 -1.7083 13 1 6.5864 -1.4609 -1.3229 14 6 6.0552 -3.0027 -2.8333 15 7 4.9096 -3.9341 -2.8489 16 6 4.5107 -4.6735 -3.9029 17 8 5.0517 -4.5361 -4.9796 18 6 3.3925 -5.6710 -3.7433 19 1 2.6778 -5.3024 -3.0074 20 6 2.6866 -5.8682 -5.0884 21 6 1.6039 -6.9405 -4.9321 22 6 2.2461 -8.2317 -4.4180 23 8 2.9113 -7.9713 -3.1803 24 6 3.9655 -7.0113 -3.2752 25 6 4.2754 -3.9196 -1.5178 26 6 5.0715 -2.9217 -0.6684 27 1 5.8634 -3.4569 -0.1443 28 6 4.2261 -2.2060 0.3574 29 1 -0.4851 0.8400 0.0004 30 1 4.6988 0.3636 -0.6329 31 1 3.1999 0.4030 -1.5986 32 1 5.1598 -0.3191 -2.9603 33 1 3.9236 -1.5903 -2.8438 34 1 6.1467 -2.4955 -3.7937 35 1 6.9756 -3.5353 -2.5937 36 1 2.2282 -4.9298 -5.4006 37 1 3.4114 -6.1883 -5.8371 38 1 0.8529 -6.5986 -4.2200 39 1 1.1338 -7.1267 -5.8976 40 1 1.4738 -8.9854 -4.2641 41 1 2.9681 -8.5948 -5.1494 42 1 4.7099 -7.3584 -3.9916 43 1 4.4318 -6.8858 -2.2980 44 1 4.3226 -4.9124 -1.0705 45 1 3.2382 -3.5954 -1.6013 46 1 3.6254 -2.9369 0.8988 47 1 4.8787 -1.6891 1.0610 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087905395.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:12 Heat of formation + Delta-G solvation = -59.362438 kcal Electronic energy + Delta-G solvation = -27346.684633 eV Core-core repulsion = 23722.679516 eV Total energy + Delta-G solvation = -3624.005118 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.67141 -39.41587 -38.05436 -35.58732 -33.72707 -32.66511 -31.71894 -31.34187 -30.60283 -27.81723 -25.99401 -25.20399 -24.59844 -23.20075 -22.34577 -21.49766 -20.56112 -19.12473 -18.62277 -17.16769 -16.92737 -16.46595 -16.27842 -15.69409 -15.44931 -15.24896 -14.79616 -14.34959 -13.99317 -13.89905 -13.71081 -13.26146 -13.25094 -13.02485 -12.76783 -12.67793 -12.57209 -12.24701 -11.88767 -11.72164 -11.66271 -11.33718 -11.23487 -11.11207 -10.94398 -10.82181 -10.55653 -10.52575 -10.14678 -9.87982 -9.85484 -9.65444 -9.55306 -9.43361 -8.67651 -8.48081 -6.97437 -5.97562 -3.41637 2.64380 3.02897 3.27398 3.43795 3.46632 3.68850 4.40983 4.48368 4.56051 4.70198 4.74614 4.76170 4.79691 4.90868 4.96595 5.07061 5.10598 5.23085 5.33457 5.38720 5.43740 5.51790 5.54078 5.60589 5.68478 5.69743 5.75220 5.82094 5.87554 5.88241 5.97319 6.00157 6.15021 6.19521 6.26306 6.29188 6.33341 6.44001 6.54419 6.58843 6.62839 6.90027 6.94885 7.61811 7.96230 8.21852 8.30793 8.89245 9.66937 10.07348 11.18297 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.016696 B = 0.004387 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.659725 B = 6381.300290 C = 7123.998187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.026 3.974 3 Si 0.895 3.105 4 H -0.288 1.288 5 H -0.305 1.305 6 H -0.270 1.270 7 C -0.261 4.261 8 H 0.085 0.915 9 N -0.603 5.603 10 C 0.119 3.881 11 C -0.127 4.127 12 C -0.087 4.087 13 H 0.093 0.907 14 C 0.107 3.893 15 N -0.612 5.612 16 C 0.537 3.463 17 O -0.548 6.548 18 C -0.141 4.141 19 H 0.104 0.896 20 C -0.104 4.104 21 C -0.156 4.156 22 C 0.058 3.942 23 O -0.376 6.376 24 C 0.079 3.921 25 C 0.109 3.891 26 C -0.109 4.109 27 H 0.071 0.929 28 C 0.160 3.840 29 H 0.263 0.737 30 H 0.030 0.970 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.097 0.903 44 H 0.064 0.936 45 H 0.086 0.914 46 H 0.066 0.934 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.662 -12.357 -6.218 16.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.174 4.174 3 Si 0.726 3.274 4 H -0.216 1.216 5 H -0.234 1.234 6 H -0.195 1.195 7 C -0.389 4.389 8 H 0.102 0.898 9 N -0.327 5.327 10 C -0.006 4.006 11 C -0.167 4.167 12 C -0.106 4.106 13 H 0.111 0.889 14 C -0.015 4.015 15 N -0.345 5.345 16 C 0.326 3.674 17 O -0.427 6.427 18 C -0.163 4.163 19 H 0.122 0.878 20 C -0.142 4.142 21 C -0.194 4.194 22 C -0.019 4.019 23 O -0.294 6.294 24 C 0.002 3.998 25 C -0.014 4.014 26 C -0.130 4.130 27 H 0.089 0.911 28 C 0.033 3.967 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.113 0.887 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.115 0.885 44 H 0.082 0.918 45 H 0.104 0.896 46 H 0.085 0.915 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 9.682 -12.339 -6.647 17.035 hybrid contribution 0.432 1.240 -0.278 1.342 sum 10.114 -11.100 -6.925 16.537 Atomic orbital electron populations 1.69758 1.05697 1.26613 1.53527 1.25343 0.95253 0.97808 0.98959 0.86827 0.79477 0.84052 0.77017 1.21612 1.23361 1.19533 1.18855 0.81332 0.94086 1.44608 0.89758 1.44005 1.05044 1.34062 1.49556 1.21419 0.96193 0.92432 0.90583 1.21952 0.97724 0.98172 0.98827 1.22308 0.98565 0.95317 0.94441 0.88914 1.22574 0.88258 0.90644 1.00073 1.48660 1.31212 1.42423 1.12193 1.20027 0.83690 0.81051 0.82674 1.90666 1.57659 1.68598 1.25735 1.21961 0.97324 0.95894 1.01080 0.87798 1.21443 0.97630 0.99810 0.95353 1.22218 0.98813 0.95968 1.02396 1.22638 0.96244 0.96738 0.86274 1.87970 1.49533 1.60081 1.31805 1.22367 0.89138 0.86174 1.02153 1.22055 0.99000 0.98871 0.81435 1.21898 0.98419 0.95920 0.96780 0.91104 1.20046 0.92534 0.92009 0.92087 0.92704 0.95255 0.90888 0.92933 0.91543 0.90594 0.91930 0.90932 0.90652 0.90557 0.90446 0.88676 0.93119 0.92592 0.88471 0.91797 0.89587 0.91537 0.95702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.44 13.97 55.49 0.78 -26.66 16 2 C 0.03 0.72 5.37 -17.43 -0.09 0.62 16 3 Si 0.89 22.07 24.35 -169.99 -4.14 17.93 16 4 H -0.29 -6.89 6.44 56.52 0.36 -6.53 16 5 H -0.31 -7.72 7.11 56.52 0.40 -7.32 16 6 H -0.27 -6.49 6.63 56.52 0.37 -6.11 16 7 C -0.26 -6.92 10.08 -15.06 -0.15 -7.07 16 8 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 9 N -0.60 -13.31 2.67 -174.83 -0.47 -13.78 16 10 C 0.12 2.46 4.18 -3.77 -0.02 2.44 16 11 C -0.13 -2.19 5.01 -26.81 -0.13 -2.32 16 12 C -0.09 -1.23 3.67 -88.47 -0.32 -1.56 16 13 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 14 C 0.11 1.46 6.23 -1.86 -0.01 1.45 16 15 N -0.61 -8.92 2.89 -169.97 -0.49 -9.41 16 16 C 0.54 8.25 6.94 -10.99 -0.08 8.17 16 17 O -0.55 -9.96 16.31 5.56 0.09 -9.87 16 18 C -0.14 -1.83 2.32 -91.64 -0.21 -2.04 16 19 H 0.10 1.41 7.21 -51.93 -0.37 1.03 16 20 C -0.10 -1.27 4.93 -26.55 -0.13 -1.40 16 21 C -0.16 -1.55 6.14 -26.59 -0.16 -1.71 16 22 C 0.06 0.55 6.84 37.21 0.25 0.81 16 23 O -0.38 -4.52 10.77 -35.23 -0.38 -4.90 16 24 C 0.08 0.91 6.11 37.20 0.23 1.14 16 25 C 0.11 1.55 5.16 -3.35 -0.02 1.53 16 26 C -0.11 -1.56 2.70 -90.90 -0.25 -1.80 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 C 0.16 2.83 5.74 -5.61 -0.03 2.80 16 29 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.03 0.59 7.29 -51.93 -0.38 0.21 16 31 H 0.07 1.69 4.15 -51.93 -0.22 1.48 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.07 1.28 7.20 -51.93 -0.37 0.90 16 34 H 0.08 1.11 7.84 -51.93 -0.41 0.70 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.94 7.76 -51.93 -0.40 0.54 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.10 1.03 7.87 -51.93 -0.41 0.63 16 44 H 0.06 0.78 7.87 -51.93 -0.41 0.37 16 45 H 0.09 1.47 7.77 -51.93 -0.40 1.07 16 46 H 0.07 1.17 7.92 -51.93 -0.41 0.75 16 47 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 351.37 15.07 5.30 5.30 Total: -1.00 -31.36 351.37 -8.50 -39.86 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -8.06 Total: 0.47 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -1.13 Total: 1.06 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: -0.18 Total: -49.85 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.29 Total: -14.77 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.14 Total: 17.93 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.36 -8.50 -39.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087905395.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.500 kcal (2) G-P(sol) polarization free energy of solvation -31.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds