Wall clock time and date at job start Fri Apr 10 2020 17:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99729 * 2 1 4 4 H 1.48501 * 109.47114 * 267.13133 * 3 2 1 5 5 H 1.48500 * 109.47312 * 27.13466 * 3 2 1 6 6 H 1.48507 * 109.47093 * 147.13318 * 3 2 1 7 7 C 1.38812 * 120.00189 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99707 * 347.48868 * 7 2 1 9 9 N 1.36932 * 120.00090 * 167.48897 * 7 2 1 10 10 C 1.47206 * 121.32470 * 327.63884 * 9 7 2 11 11 C 1.52780 * 107.80458 * 237.98468 * 10 9 7 12 12 C 1.53068 * 110.80902 * 302.26708 * 11 10 9 13 13 H 1.09002 * 112.49910 * 288.18396 * 12 11 10 14 14 C 1.55906 * 106.86153 * 163.75643 * 12 11 10 15 15 N 1.47648 * 104.42179 * 283.01616 * 14 12 11 16 16 C 1.34781 * 125.73217 * 155.05083 * 15 14 12 17 17 O 1.21283 * 119.99947 * 354.84993 * 16 15 14 18 18 C 1.50696 * 119.99925 * 174.84351 * 16 15 14 19 19 H 1.09003 * 109.51940 * 32.76395 * 18 16 15 20 20 C 1.53180 * 109.52078 * 152.88860 * 18 16 15 21 21 C 1.53180 * 109.03691 * 176.88777 * 20 18 16 22 22 C 1.53096 * 109.15862 * 303.02363 * 21 20 18 23 23 O 1.42900 * 109.41744 * 57.60849 * 22 21 20 24 24 C 1.42901 * 114.09537 * 298.83705 * 23 22 21 25 25 C 1.47452 * 108.53609 * 335.03704 * 15 14 12 26 26 C 1.53328 * 106.45004 * 0.54863 * 25 15 14 27 27 H 1.09005 * 108.90583 * 268.41906 * 26 25 15 28 28 C 1.45484 * 121.03870 * 148.20101 * 9 7 2 29 29 H 0.96998 * 120.00414 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.79484 * 118.40842 * 10 9 7 31 31 H 1.09001 * 109.84030 * 357.58358 * 10 9 7 32 32 H 1.08993 * 109.21099 * 181.92918 * 11 10 9 33 33 H 1.09003 * 109.17699 * 62.58732 * 11 10 9 34 34 H 1.08999 * 110.44270 * 41.75039 * 14 12 11 35 35 H 1.09004 * 110.44731 * 164.28086 * 14 12 11 36 36 H 1.09003 * 109.54258 * 296.75757 * 20 18 16 37 37 H 1.09006 * 109.54206 * 57.02088 * 20 18 16 38 38 H 1.08998 * 109.52075 * 62.92336 * 21 20 18 39 39 H 1.08993 * 109.51981 * 183.11582 * 21 20 18 40 40 H 1.09004 * 109.47449 * 177.59252 * 22 21 20 41 41 H 1.09000 * 109.47912 * 297.62143 * 22 21 20 42 42 H 1.08995 * 109.48412 * 301.17764 * 24 23 22 43 43 H 1.09003 * 109.47680 * 181.14126 * 24 23 22 44 44 H 1.08998 * 110.05846 * 241.30528 * 25 15 14 45 45 H 1.08992 * 110.06468 * 119.79647 * 25 15 14 46 46 H 1.08998 * 109.64724 * 6.93482 * 28 9 7 47 47 H 1.09004 * 107.96750 * 248.17444 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.5583 2.0114 -1.3983 5 1 1.4186 2.6694 0.6385 6 1 3.5161 1.4585 0.7598 7 6 2.0103 -1.2021 -0.0005 8 1 1.4895 -2.1264 0.2017 9 7 3.3552 -1.2161 -0.2574 10 6 3.9697 -0.2405 -1.1727 11 6 4.6668 -1.0199 -2.2867 12 6 5.7090 -1.9803 -1.7083 13 1 6.5864 -1.4609 -1.3229 14 6 6.0552 -3.0027 -2.8333 15 7 4.9096 -3.9341 -2.8489 16 6 4.5107 -4.6735 -3.9029 17 8 5.0517 -4.5361 -4.9796 18 6 3.3925 -5.6710 -3.7433 19 1 2.6778 -5.3024 -3.0074 20 6 2.6866 -5.8682 -5.0884 21 6 1.6039 -6.9405 -4.9321 22 6 2.2461 -8.2317 -4.4180 23 8 2.9113 -7.9713 -3.1803 24 6 3.9655 -7.0113 -3.2752 25 6 4.2754 -3.9196 -1.5178 26 6 5.0715 -2.9217 -0.6684 27 1 5.8634 -3.4569 -0.1443 28 6 4.2261 -2.2060 0.3574 29 1 -0.4851 0.8400 0.0004 30 1 4.6988 0.3636 -0.6329 31 1 3.1999 0.4030 -1.5986 32 1 5.1598 -0.3191 -2.9603 33 1 3.9236 -1.5903 -2.8438 34 1 6.1467 -2.4955 -3.7937 35 1 6.9756 -3.5353 -2.5937 36 1 2.2282 -4.9298 -5.4006 37 1 3.4114 -6.1883 -5.8371 38 1 0.8529 -6.5986 -4.2200 39 1 1.1338 -7.1267 -5.8976 40 1 1.4738 -8.9854 -4.2641 41 1 2.9681 -8.5948 -5.1494 42 1 4.7099 -7.3584 -3.9916 43 1 4.4318 -6.8858 -2.2980 44 1 4.3226 -4.9124 -1.0705 45 1 3.2382 -3.5954 -1.6013 46 1 3.6254 -2.9369 0.8988 47 1 4.8787 -1.6891 1.0610 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087905395.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:12 Heat of formation + Delta-G solvation = -79.870945 kcal Electronic energy + Delta-G solvation = -27347.573949 eV Core-core repulsion = 23722.679516 eV Total energy + Delta-G solvation = -3624.894433 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.83306 -40.51053 -39.23683 -37.12888 -34.72786 -34.30603 -33.14386 -32.59566 -31.95446 -29.16758 -27.47803 -26.16278 -25.80546 -24.52956 -23.85328 -22.85183 -21.53463 -20.36054 -19.91246 -18.80958 -18.22196 -17.44549 -17.39211 -17.26607 -16.76867 -16.36223 -15.87943 -15.78326 -15.31023 -15.22481 -14.93345 -14.79206 -14.45669 -14.35583 -14.13374 -13.88714 -13.67627 -13.53456 -13.32858 -13.29030 -12.92461 -12.62859 -12.49943 -12.32585 -12.17753 -12.08169 -11.97122 -11.77137 -11.57506 -11.43601 -11.22344 -11.12371 -10.94266 -10.63860 -10.53488 -9.67080 -8.83861 -8.13647 -5.52136 1.30457 1.41049 1.45012 1.50604 1.91356 2.43043 2.83242 3.12584 3.32348 3.39061 3.55734 3.59003 3.70312 3.75054 3.83699 3.92282 4.07898 4.17289 4.19275 4.32952 4.39760 4.43674 4.50219 4.55854 4.59732 4.62698 4.67592 4.72382 4.74126 4.83445 4.84104 4.92624 4.96963 4.98140 5.02798 5.05397 5.07306 5.18203 5.22654 5.25935 5.32104 5.52305 5.93318 6.10895 6.17463 6.43456 6.96525 7.02540 7.64772 8.08585 9.06183 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.016696 B = 0.004387 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.659725 B = 6381.300290 C = 7123.998187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.038 4.038 3 Si 0.956 3.044 4 H -0.280 1.280 5 H -0.317 1.317 6 H -0.253 1.253 7 C -0.238 4.238 8 H 0.052 0.948 9 N -0.616 5.616 10 C 0.115 3.885 11 C -0.120 4.120 12 C -0.079 4.079 13 H 0.126 0.874 14 C 0.108 3.892 15 N -0.612 5.612 16 C 0.534 3.466 17 O -0.580 6.580 18 C -0.138 4.138 19 H 0.092 0.908 20 C -0.105 4.105 21 C -0.151 4.151 22 C 0.053 3.947 23 O -0.390 6.390 24 C 0.085 3.915 25 C 0.114 3.886 26 C -0.104 4.104 27 H 0.113 0.887 28 C 0.156 3.844 29 H 0.259 0.741 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.036 0.964 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.097 0.903 40 H 0.115 0.885 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.107 0.893 44 H 0.090 0.910 45 H 0.047 0.953 46 H 0.060 0.940 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.782 -13.340 -6.016 19.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.232 4.232 3 Si 0.786 3.214 4 H -0.207 1.207 5 H -0.247 1.247 6 H -0.177 1.177 7 C -0.368 4.368 8 H 0.070 0.930 9 N -0.341 5.341 10 C -0.010 4.010 11 C -0.160 4.160 12 C -0.098 4.098 13 H 0.143 0.857 14 C -0.014 4.014 15 N -0.345 5.345 16 C 0.323 3.677 17 O -0.461 6.461 18 C -0.160 4.160 19 H 0.111 0.889 20 C -0.143 4.143 21 C -0.189 4.189 22 C -0.023 4.023 23 O -0.308 6.308 24 C 0.008 3.992 25 C -0.009 4.009 26 C -0.124 4.124 27 H 0.131 0.869 28 C 0.030 3.970 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.110 0.890 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.116 0.884 40 H 0.133 0.867 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.126 0.874 44 H 0.108 0.892 45 H 0.066 0.934 46 H 0.079 0.921 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 12.861 -13.341 -6.435 19.616 hybrid contribution -0.564 1.463 -0.371 1.611 sum 12.297 -11.878 -6.806 18.402 Atomic orbital electron populations 1.69911 1.07481 1.27039 1.56729 1.26006 0.95846 1.01267 1.00092 0.85822 0.78497 0.79710 0.77392 1.20718 1.24663 1.17690 1.18792 0.83533 0.92646 1.41855 0.93040 1.44112 1.03942 1.35421 1.50618 1.21441 0.95740 0.92387 0.91417 1.21833 0.97850 0.98577 0.97707 1.22351 0.98463 0.94657 0.94311 0.85656 1.22660 0.88873 0.90506 0.99342 1.48738 1.31418 1.42205 1.12089 1.20386 0.83737 0.81259 0.82305 1.90644 1.58872 1.69753 1.26828 1.21964 0.96424 0.96345 1.01220 0.88927 1.21441 0.98120 0.99850 0.94870 1.22202 0.97850 0.95485 1.03319 1.22842 0.96931 0.96749 0.85766 1.87953 1.49751 1.59920 1.33216 1.22350 0.89061 0.85060 1.02752 1.21991 0.96960 1.00349 0.81554 1.21835 0.98603 0.95788 0.96168 0.86916 1.20246 0.92319 0.91188 0.93234 0.93188 0.93565 0.93909 0.91086 0.94534 0.91777 0.89029 0.92644 0.90939 0.91506 0.88437 0.86675 0.91901 0.92151 0.87448 0.89233 0.93443 0.92133 0.94055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.50 13.97 21.65 0.30 -60.20 16 2 C -0.04 -2.18 5.37 84.86 0.46 -1.73 16 3 Si 0.96 46.21 24.35 68.60 1.67 47.88 16 4 H -0.28 -12.98 6.44 99.48 0.64 -12.34 16 5 H -0.32 -15.81 7.11 99.48 0.71 -15.10 16 6 H -0.25 -11.34 6.63 99.48 0.66 -10.68 16 7 C -0.24 -12.98 10.08 84.03 0.85 -12.14 16 8 H 0.05 3.08 8.06 -2.91 -0.02 3.06 16 9 N -0.62 -26.74 2.67 -707.04 -1.89 -28.63 16 10 C 0.11 4.56 4.18 86.17 0.36 4.92 16 11 C -0.12 -3.91 5.01 30.54 0.15 -3.75 16 12 C -0.08 -1.92 3.67 -9.40 -0.03 -1.95 16 13 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 14 C 0.11 2.60 6.23 87.17 0.54 3.15 16 15 N -0.61 -16.84 2.89 -810.06 -2.34 -19.18 16 16 C 0.53 16.08 6.94 87.66 0.61 16.69 16 17 O -0.58 -20.89 16.31 -3.04 -0.05 -20.94 16 18 C -0.14 -3.55 2.32 -11.45 -0.03 -3.57 16 19 H 0.09 2.58 7.21 -2.39 -0.02 2.56 16 20 C -0.10 -2.56 4.93 30.71 0.15 -2.40 16 21 C -0.15 -2.87 6.14 30.69 0.19 -2.68 16 22 C 0.05 0.92 6.84 72.01 0.49 1.41 16 23 O -0.39 -8.76 10.77 -148.98 -1.60 -10.36 16 24 C 0.09 1.84 6.11 72.01 0.44 2.28 16 25 C 0.11 3.04 5.16 86.31 0.45 3.49 16 26 C -0.10 -2.57 2.70 -10.98 -0.03 -2.60 16 27 H 0.11 2.01 8.14 -2.38 -0.02 1.99 16 28 C 0.16 5.12 5.74 85.91 0.49 5.61 16 29 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 30 H 0.05 1.70 7.29 -2.39 -0.02 1.68 16 31 H 0.04 1.96 4.15 -2.39 -0.01 1.95 16 32 H 0.07 2.03 8.14 -2.39 -0.02 2.02 16 33 H 0.04 1.39 7.20 -2.39 -0.02 1.37 16 34 H 0.06 1.73 7.84 -2.39 -0.02 1.71 16 35 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.07 1.80 7.76 -2.38 -0.02 1.78 16 38 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.12 1.54 8.14 -2.38 -0.02 1.52 16 41 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.11 2.05 7.87 -2.39 -0.02 2.03 16 44 H 0.09 1.94 7.87 -2.39 -0.02 1.92 16 45 H 0.05 1.65 7.77 -2.39 -0.02 1.63 16 46 H 0.06 2.04 7.92 -2.39 -0.02 2.03 16 47 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 Total: -1.00 -70.99 351.37 2.00 -68.99 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.83 Total: 15.74 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: 5.09 Total: 6.71 kcal Atomic # 7 Polarization: -104.09 SS G_CDS: -3.93 Total: -108.01 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -1.65 Total: -31.30 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.67 Total: 47.88 kcal Total: -70.99 2.00 -68.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087905395.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.885 kcal (2) G-P(sol) polarization free energy of solvation -70.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds