Wall clock time and date at job start Fri Apr 10 2020 17:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86802 * 119.99837 * 2 1 4 4 H 1.48504 * 109.46995 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47130 * 300.00157 * 3 2 1 6 6 H 1.48497 * 109.47024 * 60.00359 * 3 2 1 7 7 C 1.38804 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00477 * 197.11946 * 7 2 1 9 9 N 1.36937 * 120.00219 * 16.84982 * 7 2 1 10 10 C 1.47236 * 121.39676 * 207.15733 * 9 7 2 11 11 C 1.52742 * 107.70627 * 238.33703 * 10 9 7 12 12 C 1.53084 * 110.93415 * 302.04183 * 11 10 9 13 13 H 1.09008 * 112.14436 * 288.29483 * 12 11 10 14 14 C 1.55412 * 106.23238 * 164.37933 * 12 11 10 15 15 N 1.47191 * 106.92886 * 268.76402 * 14 12 11 16 16 C 1.34775 * 125.64836 * 178.81678 * 15 14 12 17 17 O 1.21284 * 120.00096 * 0.02562 * 16 15 14 18 18 C 1.50698 * 119.99941 * 179.97438 * 16 15 14 19 19 C 1.53000 * 109.47194 * 179.97438 * 18 16 15 20 20 H 1.09002 * 110.45249 * 52.40139 * 19 18 16 21 21 C 1.54507 * 110.51226 * 175.00178 * 19 18 16 22 22 C 1.54472 * 104.06401 * 118.64927 * 21 19 18 23 23 O 1.44428 * 104.80396 * 23.97697 * 22 21 19 24 24 C 1.44423 * 105.27580 * 319.49132 * 23 22 21 25 25 C 1.47851 * 108.69989 * 358.83819 * 15 14 12 26 26 C 1.53852 * 103.98972 * 336.65052 * 25 15 14 27 27 H 1.09003 * 109.15498 * 283.00094 * 26 25 15 28 28 C 1.46707 * 121.38884 * 26.87416 * 9 7 2 29 29 H 0.96999 * 119.99855 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.80587 * 357.88758 * 10 9 7 31 31 H 1.08995 * 109.81307 * 118.78252 * 10 9 7 32 32 H 1.09003 * 109.18656 * 62.41846 * 11 10 9 33 33 H 1.09000 * 109.18392 * 181.71814 * 11 10 9 34 34 H 1.08995 * 109.97079 * 28.13401 * 14 12 11 35 35 H 1.08995 * 109.96920 * 149.40033 * 14 12 11 36 36 H 1.08999 * 109.47165 * 300.00498 * 18 16 15 37 37 H 1.09003 * 109.46797 * 60.00466 * 18 16 15 38 38 H 1.09001 * 110.51072 * 237.29332 * 21 19 18 39 39 H 1.09005 * 110.51004 * 359.86428 * 21 19 18 40 40 H 1.09004 * 110.37867 * 142.81172 * 22 21 19 41 41 H 1.09004 * 110.37154 * 265.14944 * 22 21 19 42 42 H 1.09004 * 110.37222 * 281.67699 * 24 23 22 43 43 H 1.09002 * 110.37646 * 159.33991 * 24 23 22 44 44 H 1.08998 * 110.52551 * 218.02100 * 25 15 14 45 45 H 1.09002 * 110.63858 * 95.33362 * 25 15 14 46 46 H 1.09002 * 109.12248 * 248.30130 * 28 9 7 47 47 H 1.08998 * 109.12559 * 7.39185 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0544 -1.2230 0.2748 9 7 1.3697 -2.3624 -0.3448 10 6 1.8146 -3.6669 0.1732 11 6 2.1512 -4.5522 -1.0251 12 6 0.9408 -4.7043 -1.9500 13 1 0.1659 -5.3338 -1.5124 14 6 1.4882 -5.2606 -3.2939 15 7 1.8021 -4.0994 -4.1423 16 6 2.3226 -4.1519 -5.3844 17 8 2.5717 -5.2245 -5.8927 18 6 2.5940 -2.8778 -6.1420 19 6 3.1798 -3.2156 -7.5145 20 1 2.5448 -3.9336 -8.0334 21 6 3.3511 -1.9340 -8.3603 22 6 4.8710 -1.8602 -8.6265 23 8 5.3344 -3.2222 -8.4995 24 6 4.6165 -3.7646 -7.3697 25 6 1.4522 -2.8660 -3.4060 26 6 0.4000 -3.3290 -2.3834 27 1 -0.5558 -3.4637 -2.8898 28 6 0.2077 -2.3570 -1.2403 29 1 -0.4850 0.8400 -0.0004 30 1 2.6998 -3.5349 0.7952 31 1 1.0162 -4.1241 0.7576 32 1 2.9736 -4.1035 -1.5823 33 1 2.4549 -5.5366 -0.6691 34 1 2.3903 -5.8455 -3.1149 35 1 0.7320 -5.8801 -3.7760 36 1 1.6630 -2.3257 -6.2698 37 1 3.3047 -2.2678 -5.5843 38 1 2.8028 -2.0194 -9.2985 39 1 3.0162 -1.0600 -7.8015 40 1 5.0624 -1.4865 -9.6324 41 1 5.3555 -1.2240 -7.8858 42 1 5.0620 -3.4204 -6.4363 43 1 4.6123 -4.8539 -7.4101 44 1 1.0272 -2.1245 -4.0825 45 1 2.3270 -2.4609 -2.8974 46 1 -0.6806 -2.6376 -0.6744 47 1 0.0713 -1.3531 -1.6424 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087915815.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:20 Heat of formation + Delta-G solvation = -63.281102 kcal Electronic energy + Delta-G solvation = -26807.761033 eV Core-core repulsion = 23183.585989 eV Total energy + Delta-G solvation = -3624.175044 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.40121 -39.44957 -38.09183 -35.30438 -33.62731 -32.72563 -30.80320 -30.71900 -29.85401 -27.86704 -26.67004 -25.56726 -23.63647 -22.93485 -21.83486 -21.39551 -20.50956 -19.07387 -18.44440 -17.20051 -16.89166 -16.20307 -15.95057 -15.87701 -15.33849 -14.90942 -14.75062 -14.33914 -13.82170 -13.63404 -13.61402 -13.33306 -13.06607 -12.85668 -12.61108 -12.33418 -12.08074 -12.05165 -11.79974 -11.73782 -11.37444 -11.14353 -11.05301 -10.97570 -10.78838 -10.76052 -10.62458 -10.56274 -10.26155 -10.00107 -9.89542 -9.64703 -9.53809 -9.47912 -8.61579 -8.37322 -6.77182 -5.88326 -3.29889 2.76009 3.14211 3.29569 3.39089 3.40351 3.88343 4.33487 4.41215 4.57688 4.70436 4.72970 4.92827 4.97708 5.01667 5.16219 5.18499 5.27635 5.31996 5.39512 5.46321 5.48920 5.55194 5.60417 5.65589 5.73552 5.76623 5.81531 5.88000 5.90018 6.02174 6.08527 6.10768 6.26414 6.32993 6.42306 6.50193 6.61754 6.65333 6.68438 6.75871 6.92402 7.17551 7.51221 7.70987 7.72639 8.29499 8.33679 9.11680 9.74413 10.33993 11.20332 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.013365 B = 0.004204 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.481522 B = 6658.614368 C = 8068.528365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.899 3.101 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.248 4.248 8 H 0.067 0.933 9 N -0.589 5.589 10 C 0.141 3.859 11 C -0.127 4.127 12 C -0.086 4.086 13 H 0.089 0.911 14 C 0.111 3.889 15 N -0.615 5.615 16 C 0.525 3.475 17 O -0.553 6.553 18 C -0.130 4.130 19 C -0.104 4.104 20 H 0.091 0.909 21 C -0.153 4.153 22 C 0.043 3.957 23 O -0.380 6.380 24 C 0.054 3.946 25 C 0.111 3.889 26 C -0.113 4.113 27 H 0.063 0.937 28 C 0.178 3.822 29 H 0.254 0.746 30 H 0.055 0.945 31 H 0.021 0.979 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.099 0.901 44 H 0.068 0.932 45 H 0.085 0.915 46 H 0.024 0.976 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.079 -4.939 -11.660 13.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.195 4.195 3 Si 0.729 3.271 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.378 4.378 8 H 0.085 0.915 9 N -0.312 5.312 10 C 0.015 3.985 11 C -0.167 4.167 12 C -0.105 4.105 13 H 0.107 0.893 14 C -0.012 4.012 15 N -0.348 5.348 16 C 0.314 3.686 17 O -0.432 6.432 18 C -0.170 4.170 19 C -0.123 4.123 20 H 0.110 0.890 21 C -0.191 4.191 22 C -0.034 4.034 23 O -0.299 6.299 24 C -0.022 4.022 25 C -0.011 4.011 26 C -0.134 4.134 27 H 0.082 0.918 28 C 0.051 3.949 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.039 0.961 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.117 0.883 44 H 0.087 0.913 45 H 0.103 0.897 46 H 0.042 0.958 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.318 -5.449 -12.118 13.695 hybrid contribution 0.063 1.075 0.264 1.109 sum 3.381 -4.374 -11.854 13.079 Atomic orbital electron populations 1.70026 1.05209 1.25443 1.54038 1.25013 0.95255 0.98311 1.00948 0.86274 0.79411 0.84056 0.77370 1.20264 1.21546 1.21696 1.19192 0.92593 0.84501 1.41499 0.91528 1.44047 1.34574 1.01395 1.51199 1.20907 0.97577 0.87173 0.92857 1.22035 0.96839 0.99307 0.98491 1.22158 0.97962 0.96826 0.93574 0.89309 1.22295 0.99716 0.88247 0.90910 1.48758 1.62091 1.09311 1.14653 1.20261 0.76893 0.91196 0.80300 1.90663 1.53307 1.31292 1.67980 1.21755 1.03379 0.96264 0.95602 1.22281 0.98045 0.97312 0.94664 0.89029 1.23039 0.97211 0.98135 1.00737 1.23403 0.93110 0.84942 1.01913 1.89119 1.65003 1.25509 1.50219 1.23506 0.89453 1.00218 0.89034 1.22337 0.99680 0.85764 0.93351 1.22251 0.96763 0.96282 0.98074 0.91830 1.20184 0.89020 0.97862 0.87851 0.93633 0.92654 0.96058 0.92197 0.93161 0.91760 0.92358 0.88495 0.88582 0.90491 0.90083 0.89284 0.92256 0.92499 0.88263 0.91330 0.89664 0.95804 0.89017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.50 11.16 55.49 0.62 -23.88 16 2 C 0.00 0.08 4.95 -17.43 -0.09 0.00 16 3 Si 0.90 20.44 29.59 -169.99 -5.03 15.41 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 7 C -0.25 -6.30 9.67 -15.06 -0.15 -6.45 16 8 H 0.07 1.69 7.89 -52.49 -0.41 1.27 16 9 N -0.59 -13.40 2.89 -173.67 -0.50 -13.90 16 10 C 0.14 2.71 6.52 -3.77 -0.02 2.69 16 11 C -0.13 -2.04 4.79 -26.82 -0.13 -2.17 16 12 C -0.09 -1.30 3.61 -88.77 -0.32 -1.62 16 13 H 0.09 1.25 8.14 -51.92 -0.42 0.82 16 14 C 0.11 1.63 6.18 -2.38 -0.01 1.62 16 15 N -0.61 -9.28 3.34 -170.01 -0.57 -9.85 16 16 C 0.52 7.84 7.67 -10.99 -0.08 7.75 16 17 O -0.55 -9.69 15.36 5.55 0.09 -9.61 16 18 C -0.13 -1.51 3.94 -27.88 -0.11 -1.62 16 19 C -0.10 -1.17 2.70 -89.05 -0.24 -1.41 16 20 H 0.09 1.12 7.90 -51.93 -0.41 0.71 16 21 C -0.15 -1.39 6.74 -25.17 -0.17 -1.56 16 22 C 0.04 0.42 7.63 37.93 0.29 0.71 16 23 O -0.38 -4.95 11.65 -35.23 -0.41 -5.36 16 24 C 0.05 0.68 6.38 37.93 0.24 0.93 16 25 C 0.11 1.73 5.66 -2.86 -0.02 1.72 16 26 C -0.11 -1.88 2.81 -90.52 -0.25 -2.14 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 28 C 0.18 3.76 4.77 -4.80 -0.02 3.74 16 29 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 30 H 0.05 1.06 7.96 -51.93 -0.41 0.65 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 1.04 7.08 -51.93 -0.37 0.67 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.96 7.74 -51.93 -0.40 0.56 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.10 0.99 7.87 -51.93 -0.41 0.58 16 37 H 0.10 1.06 7.96 -51.93 -0.41 0.64 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.64 7.73 -51.93 -0.40 0.24 16 40 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.71 7.74 -51.93 -0.40 0.30 16 43 H 0.10 1.35 7.80 -51.93 -0.41 0.94 16 44 H 0.07 0.98 7.54 -51.93 -0.39 0.59 16 45 H 0.09 1.51 7.52 -51.93 -0.39 1.12 16 46 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.09 2.19 6.03 -51.93 -0.31 1.88 16 LS Contribution 359.69 15.07 5.42 5.42 Total: -1.00 -29.02 359.69 -9.54 -38.56 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -8.07 Total: 1.03 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -1.09 Total: 2.18 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: -0.45 Total: -47.62 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.33 Total: -14.97 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.03 Total: 15.41 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.02 -9.54 -38.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087915815.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.722 kcal (2) G-P(sol) polarization free energy of solvation -29.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds