Wall clock time and date at job start Fri Apr 10 2020 17:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86802 * 119.99837 * 2 1 4 4 H 1.48504 * 109.46995 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47130 * 300.00157 * 3 2 1 6 6 H 1.48497 * 109.47024 * 60.00359 * 3 2 1 7 7 C 1.38804 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00477 * 197.11946 * 7 2 1 9 9 N 1.36937 * 120.00219 * 16.84982 * 7 2 1 10 10 C 1.47236 * 121.39676 * 207.15733 * 9 7 2 11 11 C 1.52742 * 107.70627 * 238.33703 * 10 9 7 12 12 C 1.53084 * 110.93415 * 302.04183 * 11 10 9 13 13 H 1.09008 * 112.14436 * 288.29483 * 12 11 10 14 14 C 1.55412 * 106.23238 * 164.37933 * 12 11 10 15 15 N 1.47191 * 106.92886 * 268.76402 * 14 12 11 16 16 C 1.34775 * 125.64836 * 178.81678 * 15 14 12 17 17 O 1.21284 * 120.00096 * 0.02562 * 16 15 14 18 18 C 1.50698 * 119.99941 * 179.97438 * 16 15 14 19 19 C 1.53000 * 109.47194 * 179.97438 * 18 16 15 20 20 H 1.09002 * 110.45249 * 52.40139 * 19 18 16 21 21 C 1.54507 * 110.51226 * 175.00178 * 19 18 16 22 22 C 1.54472 * 104.06401 * 118.64927 * 21 19 18 23 23 O 1.44428 * 104.80396 * 23.97697 * 22 21 19 24 24 C 1.44423 * 105.27580 * 319.49132 * 23 22 21 25 25 C 1.47851 * 108.69989 * 358.83819 * 15 14 12 26 26 C 1.53852 * 103.98972 * 336.65052 * 25 15 14 27 27 H 1.09003 * 109.15498 * 283.00094 * 26 25 15 28 28 C 1.46707 * 121.38884 * 26.87416 * 9 7 2 29 29 H 0.96999 * 119.99855 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.80587 * 357.88758 * 10 9 7 31 31 H 1.08995 * 109.81307 * 118.78252 * 10 9 7 32 32 H 1.09003 * 109.18656 * 62.41846 * 11 10 9 33 33 H 1.09000 * 109.18392 * 181.71814 * 11 10 9 34 34 H 1.08995 * 109.97079 * 28.13401 * 14 12 11 35 35 H 1.08995 * 109.96920 * 149.40033 * 14 12 11 36 36 H 1.08999 * 109.47165 * 300.00498 * 18 16 15 37 37 H 1.09003 * 109.46797 * 60.00466 * 18 16 15 38 38 H 1.09001 * 110.51072 * 237.29332 * 21 19 18 39 39 H 1.09005 * 110.51004 * 359.86428 * 21 19 18 40 40 H 1.09004 * 110.37867 * 142.81172 * 22 21 19 41 41 H 1.09004 * 110.37154 * 265.14944 * 22 21 19 42 42 H 1.09004 * 110.37222 * 281.67699 * 24 23 22 43 43 H 1.09002 * 110.37646 * 159.33991 * 24 23 22 44 44 H 1.08998 * 110.52551 * 218.02100 * 25 15 14 45 45 H 1.09002 * 110.63858 * 95.33362 * 25 15 14 46 46 H 1.09002 * 109.12248 * 248.30130 * 28 9 7 47 47 H 1.08998 * 109.12559 * 7.39185 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0544 -1.2230 0.2748 9 7 1.3697 -2.3624 -0.3448 10 6 1.8146 -3.6669 0.1732 11 6 2.1512 -4.5522 -1.0251 12 6 0.9408 -4.7043 -1.9500 13 1 0.1659 -5.3338 -1.5124 14 6 1.4882 -5.2606 -3.2939 15 7 1.8021 -4.0994 -4.1423 16 6 2.3226 -4.1519 -5.3844 17 8 2.5717 -5.2245 -5.8927 18 6 2.5940 -2.8778 -6.1420 19 6 3.1798 -3.2156 -7.5145 20 1 2.5448 -3.9336 -8.0334 21 6 3.3511 -1.9340 -8.3603 22 6 4.8710 -1.8602 -8.6265 23 8 5.3344 -3.2222 -8.4995 24 6 4.6165 -3.7646 -7.3697 25 6 1.4522 -2.8660 -3.4060 26 6 0.4000 -3.3290 -2.3834 27 1 -0.5558 -3.4637 -2.8898 28 6 0.2077 -2.3570 -1.2403 29 1 -0.4850 0.8400 -0.0004 30 1 2.6998 -3.5349 0.7952 31 1 1.0162 -4.1241 0.7576 32 1 2.9736 -4.1035 -1.5823 33 1 2.4549 -5.5366 -0.6691 34 1 2.3903 -5.8455 -3.1149 35 1 0.7320 -5.8801 -3.7760 36 1 1.6630 -2.3257 -6.2698 37 1 3.3047 -2.2678 -5.5843 38 1 2.8028 -2.0194 -9.2985 39 1 3.0162 -1.0600 -7.8015 40 1 5.0624 -1.4865 -9.6324 41 1 5.3555 -1.2240 -7.8858 42 1 5.0620 -3.4204 -6.4363 43 1 4.6123 -4.8539 -7.4101 44 1 1.0272 -2.1245 -4.0825 45 1 2.3270 -2.4609 -2.8974 46 1 -0.6806 -2.6376 -0.6744 47 1 0.0713 -1.3531 -1.6424 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087915815.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:19 Heat of formation + Delta-G solvation = -79.938311 kcal Electronic energy + Delta-G solvation = -26808.483343 eV Core-core repulsion = 23183.585989 eV Total energy + Delta-G solvation = -3624.897354 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.58977 -40.48982 -39.33469 -36.86647 -34.63241 -34.28659 -32.29672 -32.23572 -30.74486 -29.18555 -27.80869 -27.19517 -25.08649 -23.84151 -23.26443 -22.83088 -21.44007 -20.29780 -19.87811 -18.67448 -18.10163 -17.43782 -17.13957 -16.83352 -16.65226 -16.24267 -15.95081 -15.65930 -15.26609 -15.17422 -14.91111 -14.51790 -14.40047 -13.96771 -13.79987 -13.73237 -13.50226 -13.21174 -13.06614 -12.82401 -12.71842 -12.57949 -12.48174 -12.22702 -12.17097 -12.02375 -11.95764 -11.87601 -11.65230 -11.55493 -11.02296 -11.00755 -10.83598 -10.78853 -10.51336 -9.64526 -8.62784 -7.83238 -5.26457 1.48389 1.52811 1.60069 1.61119 1.99065 2.54728 3.03219 3.28139 3.37120 3.62201 3.68693 3.71418 3.75974 3.84645 3.91908 3.97646 4.19365 4.28409 4.32039 4.41718 4.43018 4.52656 4.54839 4.61698 4.68156 4.73682 4.74168 4.83044 4.85489 4.88768 4.91297 4.99612 5.08539 5.11035 5.15839 5.18886 5.21137 5.24964 5.33508 5.41284 5.59455 5.68751 5.79144 5.82781 6.42746 6.52612 7.12270 7.20103 7.90093 8.44827 9.23237 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.013365 B = 0.004204 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.481522 B = 6658.614368 C = 8068.528365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.042 4.042 3 Si 0.957 3.043 4 H -0.270 1.270 5 H -0.287 1.287 6 H -0.298 1.298 7 C -0.252 4.252 8 H 0.063 0.937 9 N -0.606 5.606 10 C 0.138 3.862 11 C -0.115 4.115 12 C -0.079 4.079 13 H 0.106 0.894 14 C 0.114 3.886 15 N -0.615 5.615 16 C 0.521 3.479 17 O -0.581 6.581 18 C -0.124 4.124 19 C -0.101 4.101 20 H 0.079 0.921 21 C -0.146 4.146 22 C 0.036 3.964 23 O -0.403 6.403 24 C 0.054 3.946 25 C 0.122 3.878 26 C -0.109 4.109 27 H 0.078 0.922 28 C 0.190 3.810 29 H 0.249 0.751 30 H 0.051 0.949 31 H 0.022 0.978 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.117 0.883 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.067 0.933 42 H 0.056 0.944 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.064 0.936 46 H -0.001 1.001 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.398 -4.837 -12.779 14.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.238 4.238 3 Si 0.786 3.214 4 H -0.195 1.195 5 H -0.213 1.213 6 H -0.225 1.225 7 C -0.383 4.383 8 H 0.081 0.919 9 N -0.329 5.329 10 C 0.012 3.988 11 C -0.154 4.154 12 C -0.098 4.098 13 H 0.124 0.876 14 C -0.008 4.008 15 N -0.348 5.348 16 C 0.312 3.688 17 O -0.462 6.462 18 C -0.164 4.164 19 C -0.120 4.120 20 H 0.098 0.902 21 C -0.183 4.183 22 C -0.040 4.040 23 O -0.322 6.322 24 C -0.023 4.023 25 C -0.001 4.001 26 C -0.130 4.130 27 H 0.096 0.904 28 C 0.064 3.936 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.040 0.960 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.135 0.865 37 H 0.123 0.877 38 H 0.106 0.894 39 H 0.116 0.884 40 H 0.125 0.875 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.099 0.901 44 H 0.103 0.897 45 H 0.082 0.918 46 H 0.017 0.983 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.652 -5.367 -13.241 14.746 hybrid contribution -0.009 0.988 0.665 1.191 sum 3.643 -4.379 -12.576 13.806 Atomic orbital electron populations 1.70162 1.06404 1.25649 1.55634 1.25614 0.95860 1.00865 1.01476 0.85367 0.78639 0.80614 0.76788 1.19485 1.21348 1.22504 1.19421 0.92635 0.85712 1.40495 0.91894 1.44273 1.34714 1.01961 1.51947 1.21034 0.97254 0.86234 0.94248 1.21883 0.96827 0.99701 0.97009 1.22154 0.97871 0.96014 0.93784 0.87622 1.22263 0.99903 0.88232 0.90450 1.48792 1.62133 1.09078 1.14816 1.20848 0.75992 0.91947 0.80063 1.90657 1.54381 1.32685 1.68485 1.21795 1.04587 0.94736 0.95243 1.22221 0.96745 0.98213 0.94799 0.90217 1.23028 0.96850 0.97411 1.01036 1.23647 0.93586 0.83498 1.03320 1.89092 1.65530 1.27347 1.50242 1.23436 0.90508 0.99296 0.89017 1.22122 0.98408 0.86217 0.93317 1.22046 0.98085 0.96105 0.96748 0.90388 1.19924 0.87710 0.97443 0.88560 0.94132 0.93061 0.96020 0.93426 0.90455 0.91772 0.91542 0.86455 0.87658 0.89378 0.88354 0.87525 0.91521 0.92625 0.90108 0.89692 0.91770 0.98289 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.43 11.16 21.65 0.24 -51.19 16 2 C -0.04 -2.21 4.95 84.86 0.42 -1.79 16 3 Si 0.96 42.14 29.59 68.60 2.03 44.17 16 4 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.30 -13.39 7.11 99.48 0.71 -12.69 16 7 C -0.25 -12.87 9.67 84.03 0.81 -12.06 16 8 H 0.06 3.19 7.89 -2.91 -0.02 3.17 16 9 N -0.61 -27.59 2.89 -703.38 -2.04 -29.62 16 10 C 0.14 5.20 6.52 86.15 0.56 5.76 16 11 C -0.12 -3.49 4.79 30.54 0.15 -3.34 16 12 C -0.08 -2.23 3.61 -9.60 -0.03 -2.26 16 13 H 0.11 2.66 8.14 -2.38 -0.02 2.64 16 14 C 0.11 3.10 6.18 87.08 0.54 3.63 16 15 N -0.62 -17.39 3.34 -810.19 -2.71 -20.09 16 16 C 0.52 14.71 7.67 87.66 0.67 15.38 16 17 O -0.58 -19.80 15.36 -3.04 -0.05 -19.85 16 18 C -0.12 -2.60 3.94 29.85 0.12 -2.48 16 19 C -0.10 -2.11 2.70 -9.78 -0.03 -2.13 16 20 H 0.08 1.87 7.90 -2.39 -0.02 1.85 16 21 C -0.15 -2.25 6.74 31.61 0.21 -2.04 16 22 C 0.04 0.62 7.63 72.48 0.55 1.17 16 23 O -0.40 -10.14 11.65 -148.98 -1.74 -11.88 16 24 C 0.05 1.33 6.38 72.48 0.46 1.79 16 25 C 0.12 3.61 5.66 86.41 0.49 4.10 16 26 C -0.11 -3.50 2.81 -10.73 -0.03 -3.53 16 27 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 28 C 0.19 8.10 4.77 85.78 0.41 8.51 16 29 H 0.25 13.40 8.31 -92.71 -0.77 12.63 16 30 H 0.05 1.94 7.96 -2.39 -0.02 1.92 16 31 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.05 1.57 7.08 -2.39 -0.02 1.56 16 33 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.06 1.77 7.74 -2.39 -0.02 1.75 16 35 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.12 2.01 7.87 -2.39 -0.02 1.99 16 37 H 0.11 2.06 7.96 -2.39 -0.02 2.04 16 38 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.10 1.20 7.73 -2.38 -0.02 1.19 16 40 H 0.11 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.06 1.35 7.74 -2.38 -0.02 1.33 16 43 H 0.08 2.24 7.80 -2.39 -0.02 2.22 16 44 H 0.08 2.24 7.54 -2.39 -0.02 2.22 16 45 H 0.06 2.22 7.52 -2.39 -0.02 2.20 16 46 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 47 H 0.06 3.04 6.03 -2.39 -0.01 3.02 16 Total: -1.00 -62.87 359.69 1.99 -60.88 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.94 Total: 16.87 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: 5.30 Total: 10.72 kcal Atomic # 7 Polarization: -96.41 SS G_CDS: -4.50 Total: -100.91 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -1.78 Total: -31.72 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -62.87 1.99 -60.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087915815.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.059 kcal (2) G-P(sol) polarization free energy of solvation -62.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds