Wall clock time and date at job start Fri Apr 10 2020 17:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 120.00079 * 2 1 4 4 H 1.48503 * 109.47145 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46778 * 299.99547 * 3 2 1 6 6 H 1.48503 * 109.47580 * 59.99615 * 3 2 1 7 7 C 1.38813 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00041 * 196.84947 * 7 2 1 9 9 N 1.36941 * 119.99587 * 17.12242 * 7 2 1 10 10 C 1.47198 * 121.32436 * 206.63862 * 9 7 2 11 11 C 1.52288 * 108.07355 * 237.94204 * 10 9 7 12 12 C 1.53066 * 110.88215 * 302.49441 * 11 10 9 13 13 H 1.09001 * 113.06848 * 287.59837 * 12 11 10 14 14 C 1.55906 * 106.17885 * 163.28319 * 12 11 10 15 15 N 1.47646 * 104.42031 * 283.25925 * 14 12 11 16 16 C 1.34768 * 125.73408 * 154.97233 * 15 14 12 17 17 O 1.21283 * 120.00200 * 185.06568 * 16 15 14 18 18 C 1.50699 * 120.00118 * 5.06790 * 16 15 14 19 19 H 1.08996 * 109.48626 * 307.77311 * 18 16 15 20 20 C 1.53093 * 109.48033 * 67.80734 * 18 16 15 21 21 C 1.53174 * 109.16832 * 177.59424 * 20 18 16 22 22 C 1.53180 * 109.03378 * 303.01846 * 21 20 18 23 23 C 1.53097 * 109.16400 * 56.97978 * 22 21 20 24 24 O 1.42908 * 109.41281 * 302.38853 * 23 22 21 25 25 C 1.47456 * 108.53060 * 335.02370 * 15 14 12 26 26 C 1.53327 * 106.45340 * 0.55996 * 25 15 14 27 27 H 1.09004 * 108.05093 * 268.77579 * 26 25 15 28 28 C 1.46725 * 121.32545 * 26.92917 * 9 7 2 29 29 H 0.96998 * 119.99483 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.79483 * 357.54173 * 10 9 7 31 31 H 1.08995 * 109.79476 * 118.39211 * 10 9 7 32 32 H 1.08995 * 109.27187 * 182.06679 * 11 10 9 33 33 H 1.08999 * 109.07118 * 62.78821 * 11 10 9 34 34 H 1.09009 * 110.44313 * 41.98892 * 14 12 11 35 35 H 1.08994 * 110.44815 * 164.52355 * 14 12 11 36 36 H 1.09002 * 109.51970 * 297.49817 * 20 18 16 37 37 H 1.08998 * 109.52397 * 57.68687 * 20 18 16 38 38 H 1.08994 * 109.55118 * 183.15191 * 21 20 18 39 39 H 1.09000 * 109.54548 * 62.88159 * 21 20 18 40 40 H 1.09002 * 109.52235 * 297.07421 * 22 21 20 41 41 H 1.09002 * 109.52660 * 176.88488 * 22 21 20 42 42 H 1.08998 * 109.47888 * 182.40868 * 23 22 21 43 43 H 1.08994 * 109.49094 * 62.37740 * 23 22 21 44 44 H 1.09004 * 110.05555 * 241.31061 * 25 15 14 45 45 H 1.08999 * 110.05859 * 119.81121 * 25 15 14 46 46 H 1.09000 * 109.15334 * 248.08269 * 28 9 7 47 47 H 1.09002 * 109.16204 * 7.31501 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8915 2.3966 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0555 -1.2221 0.2716 9 7 1.3710 -2.3619 -0.3481 10 6 1.8218 -3.6672 0.1616 11 6 2.1488 -4.5535 -1.0329 12 6 0.9342 -4.6994 -1.9528 13 1 0.1524 -5.3311 -1.5310 14 6 1.4799 -5.2355 -3.3113 15 7 2.0921 -4.0551 -3.9531 16 6 3.0753 -4.0815 -4.8744 17 8 3.5663 -3.0444 -5.2672 18 6 3.5646 -5.3996 -5.4167 19 1 3.8247 -6.0593 -4.5889 20 6 2.4615 -6.0466 -6.2583 21 6 2.9866 -7.3560 -6.8549 22 6 4.2464 -7.0615 -7.6751 23 6 5.2806 -6.3753 -6.7788 24 8 4.7177 -5.1810 -6.2322 25 6 1.4476 -2.8425 -3.4158 26 6 0.4093 -3.3193 -2.3933 27 1 -0.5399 -3.4516 -2.9125 28 6 0.2134 -2.3535 -1.2496 29 1 -0.4849 0.8401 -0.0004 30 1 2.7125 -3.5360 0.7760 31 1 1.0293 -4.1264 0.7524 32 1 2.4502 -5.5389 -0.6779 33 1 2.9710 -4.1077 -1.5926 34 1 2.2297 -6.0084 -3.1420 35 1 0.6649 -5.6218 -3.9232 36 1 1.5970 -6.2545 -5.6278 37 1 2.1727 -5.3699 -7.0625 38 1 2.2254 -7.7938 -7.5004 39 1 3.2291 -8.0514 -6.0514 40 1 3.9936 -6.4053 -8.5080 41 1 4.6584 -7.9952 -8.0579 42 1 6.1629 -6.1248 -7.3678 43 1 5.5632 -7.0478 -5.9689 44 1 0.9566 -2.2930 -4.2190 45 1 2.1893 -2.2098 -2.9283 46 1 -0.6777 -2.6378 -0.6899 47 1 0.0789 -1.3486 -1.6499 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087935856.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:26 Heat of formation + Delta-G solvation = -58.971317 kcal Electronic energy + Delta-G solvation = -27241.433181 eV Core-core repulsion = 23617.445024 eV Total energy + Delta-G solvation = -3623.988157 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.54495 -39.30153 -37.69436 -35.28911 -33.89671 -32.62634 -31.89148 -30.67548 -30.33092 -27.41763 -26.51155 -24.91411 -24.21573 -23.41948 -21.65358 -21.36073 -20.64832 -19.32615 -18.46727 -17.30589 -16.75950 -16.20364 -15.86645 -15.75870 -15.13741 -14.87647 -14.65498 -14.38503 -13.94681 -13.84611 -13.57199 -13.37352 -13.05110 -12.93694 -12.77166 -12.38428 -12.12187 -12.01853 -11.86158 -11.64297 -11.47022 -11.30667 -11.08943 -10.98243 -10.76060 -10.69057 -10.54605 -10.49863 -10.18091 -9.92160 -9.72975 -9.48673 -9.44432 -9.38029 -8.48028 -8.32176 -6.69014 -5.79287 -3.20199 2.78189 2.84998 3.40441 3.49009 3.51761 3.87576 4.37920 4.51363 4.51775 4.51982 4.68575 4.76424 4.79661 4.85207 5.10221 5.15055 5.19015 5.29451 5.36654 5.41241 5.44194 5.49474 5.56706 5.60661 5.64161 5.71148 5.76558 5.80337 5.88298 5.96663 6.06019 6.21521 6.29739 6.42728 6.44120 6.55568 6.69089 6.76478 6.81345 6.98036 6.98362 7.25986 7.59800 7.76315 7.80923 8.39717 8.43155 9.20905 9.83818 10.41919 11.29689 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.021801 B = 0.003830 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.033955 B = 7309.702944 C = 7904.107044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.291 1.291 7 C -0.247 4.247 8 H 0.066 0.934 9 N -0.588 5.588 10 C 0.143 3.857 11 C -0.129 4.129 12 C -0.086 4.086 13 H 0.092 0.908 14 C 0.097 3.903 15 N -0.611 5.611 16 C 0.531 3.469 17 O -0.522 6.522 18 C 0.081 3.919 19 H 0.079 0.921 20 C -0.146 4.146 21 C -0.120 4.120 22 C -0.159 4.159 23 C 0.059 3.941 24 O -0.354 6.354 25 C 0.122 3.878 26 C -0.112 4.112 27 H 0.063 0.937 28 C 0.177 3.823 29 H 0.253 0.747 30 H 0.054 0.946 31 H 0.020 0.980 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.097 0.903 43 H 0.051 0.949 44 H 0.058 0.942 45 H 0.085 0.915 46 H 0.025 0.975 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.762 -18.287 -11.327 21.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.195 4.195 3 Si 0.729 3.271 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.218 1.218 7 C -0.377 4.377 8 H 0.084 0.916 9 N -0.311 5.311 10 C 0.017 3.983 11 C -0.168 4.168 12 C -0.105 4.105 13 H 0.110 0.890 14 C -0.026 4.026 15 N -0.346 5.346 16 C 0.317 3.683 17 O -0.397 6.397 18 C 0.019 3.981 19 H 0.097 0.903 20 C -0.184 4.184 21 C -0.157 4.157 22 C -0.196 4.196 23 C -0.018 4.018 24 O -0.272 6.272 25 C 0.000 4.000 26 C -0.133 4.133 27 H 0.081 0.919 28 C 0.051 3.949 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.038 0.962 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.116 0.884 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.103 0.897 46 H 0.043 0.957 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.094 -17.354 -11.631 21.119 hybrid contribution 0.234 0.461 -0.049 0.520 sum 3.328 -16.892 -11.680 20.805 Atomic orbital electron populations 1.70024 1.05200 1.25403 1.54142 1.24987 0.95284 0.98315 1.00907 0.86267 0.79532 0.84024 0.77272 1.20224 1.21465 1.21754 1.19175 0.92552 0.84603 1.41330 0.91649 1.43977 1.34796 1.01259 1.51038 1.20766 0.97503 0.87155 0.92866 1.21910 0.97008 0.99205 0.98674 1.22307 0.97964 0.96700 0.93502 0.88982 1.22787 0.97071 0.88194 0.94594 1.48574 1.36476 1.09259 1.40316 1.19674 0.79172 0.90305 0.79139 1.90729 1.55624 1.34530 1.58793 1.21828 0.87747 0.94725 0.93765 0.90315 1.22146 0.98052 0.97602 1.00617 1.21583 0.97652 0.96728 0.99762 1.22225 0.96615 1.01346 0.99436 1.22651 0.95861 0.87014 0.96274 1.88081 1.42569 1.30205 1.66366 1.21939 0.95956 0.86612 0.95447 1.22126 0.96754 0.96424 0.97971 0.91891 1.20138 0.89056 0.98064 0.87683 0.93691 0.92751 0.96159 0.93282 0.91990 0.91216 0.91791 0.89988 0.90466 0.91011 0.91534 0.90846 0.90735 0.88443 0.93080 0.92312 0.89714 0.95744 0.89067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.77 11.18 55.49 0.62 -25.15 16 2 C 0.00 0.10 4.94 -17.43 -0.09 0.01 16 3 Si 0.90 22.04 29.59 -169.99 -5.03 17.02 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.25 -6.72 9.67 -15.06 -0.15 -6.86 16 8 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 9 N -0.59 -14.19 2.89 -174.13 -0.50 -14.69 16 10 C 0.14 2.87 6.49 -4.02 -0.03 2.84 16 11 C -0.13 -2.10 4.95 -27.06 -0.13 -2.23 16 12 C -0.09 -1.25 3.72 -88.47 -0.33 -1.58 16 13 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 14 C 0.10 1.20 4.93 -1.86 -0.01 1.19 16 15 N -0.61 -9.83 2.85 -169.97 -0.48 -10.32 16 16 C 0.53 9.23 7.19 -10.99 -0.08 9.16 16 17 O -0.52 -11.60 16.86 -14.23 -0.24 -11.84 16 18 C 0.08 1.06 2.44 -27.84 -0.07 0.99 16 19 H 0.08 0.89 7.41 -51.93 -0.38 0.51 16 20 C -0.15 -1.48 5.30 -26.59 -0.14 -1.62 16 21 C -0.12 -0.91 6.03 -26.55 -0.16 -1.07 16 22 C -0.16 -1.23 6.14 -26.59 -0.16 -1.39 16 23 C 0.06 0.56 6.84 37.21 0.25 0.82 16 24 O -0.35 -5.13 9.95 -55.02 -0.55 -5.68 16 25 C 0.12 2.28 5.91 -3.35 -0.02 2.26 16 26 C -0.11 -1.96 2.70 -90.91 -0.25 -2.21 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 C 0.18 3.98 4.66 -4.94 -0.02 3.96 16 29 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.05 1.09 7.96 -51.93 -0.41 0.68 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 1.15 7.13 -51.93 -0.37 0.78 16 34 H 0.07 0.74 7.11 -51.92 -0.37 0.37 16 35 H 0.06 0.66 7.27 -51.93 -0.38 0.28 16 36 H 0.08 0.73 6.16 -51.93 -0.32 0.41 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 45 H 0.08 1.93 7.90 -51.93 -0.41 1.52 16 46 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.09 2.35 6.03 -51.93 -0.31 2.03 16 LS Contribution 355.53 15.07 5.36 5.36 Total: -1.00 -32.54 355.53 -10.20 -42.75 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -8.00 Total: -1.70 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -1.37 Total: 4.25 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: -0.37 Total: -50.16 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.79 Total: -17.52 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.54 -10.20 -42.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087935856.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.226 kcal (2) G-P(sol) polarization free energy of solvation -32.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds