Wall clock time and date at job start Fri Apr 10 2020 17:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 120.00079 * 2 1 4 4 H 1.48503 * 109.47145 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46778 * 299.99547 * 3 2 1 6 6 H 1.48503 * 109.47580 * 59.99615 * 3 2 1 7 7 C 1.38813 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00041 * 196.84947 * 7 2 1 9 9 N 1.36941 * 119.99587 * 17.12242 * 7 2 1 10 10 C 1.47198 * 121.32436 * 206.63862 * 9 7 2 11 11 C 1.52288 * 108.07355 * 237.94204 * 10 9 7 12 12 C 1.53066 * 110.88215 * 302.49441 * 11 10 9 13 13 H 1.09001 * 113.06848 * 287.59837 * 12 11 10 14 14 C 1.55906 * 106.17885 * 163.28319 * 12 11 10 15 15 N 1.47646 * 104.42031 * 283.25925 * 14 12 11 16 16 C 1.34768 * 125.73408 * 154.97233 * 15 14 12 17 17 O 1.21283 * 120.00200 * 185.06568 * 16 15 14 18 18 C 1.50699 * 120.00118 * 5.06790 * 16 15 14 19 19 H 1.08996 * 109.48626 * 307.77311 * 18 16 15 20 20 C 1.53093 * 109.48033 * 67.80734 * 18 16 15 21 21 C 1.53174 * 109.16832 * 177.59424 * 20 18 16 22 22 C 1.53180 * 109.03378 * 303.01846 * 21 20 18 23 23 C 1.53097 * 109.16400 * 56.97978 * 22 21 20 24 24 O 1.42908 * 109.41281 * 302.38853 * 23 22 21 25 25 C 1.47456 * 108.53060 * 335.02370 * 15 14 12 26 26 C 1.53327 * 106.45340 * 0.55996 * 25 15 14 27 27 H 1.09004 * 108.05093 * 268.77579 * 26 25 15 28 28 C 1.46725 * 121.32545 * 26.92917 * 9 7 2 29 29 H 0.96998 * 119.99483 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.79483 * 357.54173 * 10 9 7 31 31 H 1.08995 * 109.79476 * 118.39211 * 10 9 7 32 32 H 1.08995 * 109.27187 * 182.06679 * 11 10 9 33 33 H 1.08999 * 109.07118 * 62.78821 * 11 10 9 34 34 H 1.09009 * 110.44313 * 41.98892 * 14 12 11 35 35 H 1.08994 * 110.44815 * 164.52355 * 14 12 11 36 36 H 1.09002 * 109.51970 * 297.49817 * 20 18 16 37 37 H 1.08998 * 109.52397 * 57.68687 * 20 18 16 38 38 H 1.08994 * 109.55118 * 183.15191 * 21 20 18 39 39 H 1.09000 * 109.54548 * 62.88159 * 21 20 18 40 40 H 1.09002 * 109.52235 * 297.07421 * 22 21 20 41 41 H 1.09002 * 109.52660 * 176.88488 * 22 21 20 42 42 H 1.08998 * 109.47888 * 182.40868 * 23 22 21 43 43 H 1.08994 * 109.49094 * 62.37740 * 23 22 21 44 44 H 1.09004 * 110.05555 * 241.31061 * 25 15 14 45 45 H 1.08999 * 110.05859 * 119.81121 * 25 15 14 46 46 H 1.09000 * 109.15334 * 248.08269 * 28 9 7 47 47 H 1.09002 * 109.16204 * 7.31501 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8915 2.3966 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0555 -1.2221 0.2716 9 7 1.3710 -2.3619 -0.3481 10 6 1.8218 -3.6672 0.1616 11 6 2.1488 -4.5535 -1.0329 12 6 0.9342 -4.6994 -1.9528 13 1 0.1524 -5.3311 -1.5310 14 6 1.4799 -5.2355 -3.3113 15 7 2.0921 -4.0551 -3.9531 16 6 3.0753 -4.0815 -4.8744 17 8 3.5663 -3.0444 -5.2672 18 6 3.5646 -5.3996 -5.4167 19 1 3.8247 -6.0593 -4.5889 20 6 2.4615 -6.0466 -6.2583 21 6 2.9866 -7.3560 -6.8549 22 6 4.2464 -7.0615 -7.6751 23 6 5.2806 -6.3753 -6.7788 24 8 4.7177 -5.1810 -6.2322 25 6 1.4476 -2.8425 -3.4158 26 6 0.4093 -3.3193 -2.3933 27 1 -0.5399 -3.4516 -2.9125 28 6 0.2134 -2.3535 -1.2496 29 1 -0.4849 0.8401 -0.0004 30 1 2.7125 -3.5360 0.7760 31 1 1.0293 -4.1264 0.7524 32 1 2.4502 -5.5389 -0.6779 33 1 2.9710 -4.1077 -1.5926 34 1 2.2297 -6.0084 -3.1420 35 1 0.6649 -5.6218 -3.9232 36 1 1.5970 -6.2545 -5.6278 37 1 2.1727 -5.3699 -7.0625 38 1 2.2254 -7.7938 -7.5004 39 1 3.2291 -8.0514 -6.0514 40 1 3.9936 -6.4053 -8.5080 41 1 4.6584 -7.9952 -8.0579 42 1 6.1629 -6.1248 -7.3678 43 1 5.5632 -7.0478 -5.9689 44 1 0.9566 -2.2930 -4.2190 45 1 2.1893 -2.2098 -2.9283 46 1 -0.6777 -2.6378 -0.6899 47 1 0.0789 -1.3486 -1.6499 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087935856.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:26 Heat of formation + Delta-G solvation = -79.212588 kcal Electronic energy + Delta-G solvation = -27242.310909 eV Core-core repulsion = 23617.445024 eV Total energy + Delta-G solvation = -3624.865885 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.76564 -40.40768 -39.02527 -36.94595 -34.73276 -34.27505 -33.07560 -32.17176 -31.75690 -28.86929 -27.87525 -26.31897 -25.21985 -24.65181 -23.12381 -22.90975 -21.33814 -20.54427 -20.03176 -18.80113 -18.13506 -17.37489 -17.20400 -16.77959 -16.67192 -16.21129 -15.78009 -15.52595 -15.36879 -15.16005 -14.98018 -14.61452 -14.45155 -14.06043 -13.89336 -13.62962 -13.60332 -13.36742 -13.21804 -12.90216 -12.82734 -12.55855 -12.49648 -12.31427 -12.17957 -12.03705 -11.98002 -11.91804 -11.66563 -11.38476 -11.05971 -10.98339 -10.75370 -10.54463 -10.47877 -9.67711 -8.66727 -7.89902 -5.31384 1.39308 1.43593 1.49540 1.51909 1.68002 2.47651 2.94095 3.24758 3.40214 3.59292 3.69184 3.74952 3.80512 3.85982 3.94863 4.02150 4.03922 4.19667 4.27648 4.39387 4.46661 4.56451 4.58279 4.63109 4.70432 4.78077 4.82202 4.86470 4.87723 4.98117 5.04868 5.08149 5.10323 5.14888 5.15950 5.17693 5.19530 5.35959 5.37680 5.41103 5.57919 5.65388 5.77149 6.13028 6.37653 6.52389 7.08834 7.15016 7.87336 8.38412 9.16153 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.021801 B = 0.003830 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.033955 B = 7309.702944 C = 7904.107044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.044 4.044 3 Si 0.952 3.048 4 H -0.275 1.275 5 H -0.293 1.293 6 H -0.286 1.286 7 C -0.253 4.253 8 H 0.056 0.944 9 N -0.608 5.608 10 C 0.137 3.863 11 C -0.119 4.119 12 C -0.079 4.079 13 H 0.128 0.872 14 C 0.099 3.901 15 N -0.607 5.607 16 C 0.519 3.481 17 O -0.588 6.588 18 C 0.088 3.912 19 H 0.106 0.894 20 C -0.141 4.141 21 C -0.115 4.115 22 C -0.156 4.156 23 C 0.050 3.950 24 O -0.397 6.397 25 C 0.129 3.871 26 C -0.106 4.106 27 H 0.089 0.911 28 C 0.186 3.814 29 H 0.250 0.750 30 H 0.044 0.956 31 H 0.031 0.969 32 H 0.091 0.909 33 H 0.033 0.967 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.054 0.946 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.058 0.942 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.070 0.930 44 H 0.049 0.951 45 H 0.032 0.968 46 H 0.011 0.989 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.493 -22.780 -11.986 25.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.240 4.240 3 Si 0.781 3.219 4 H -0.200 1.200 5 H -0.220 1.220 6 H -0.212 1.212 7 C -0.384 4.384 8 H 0.074 0.926 9 N -0.331 5.331 10 C 0.012 3.988 11 C -0.158 4.158 12 C -0.098 4.098 13 H 0.146 0.854 14 C -0.021 4.021 15 N -0.340 5.340 16 C 0.309 3.691 17 O -0.468 6.468 18 C 0.028 3.972 19 H 0.124 0.876 20 C -0.179 4.179 21 C -0.152 4.152 22 C -0.194 4.194 23 C -0.026 4.026 24 O -0.316 6.316 25 C 0.006 3.994 26 C -0.126 4.126 27 H 0.107 0.893 28 C 0.060 3.940 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.110 0.890 33 H 0.052 0.948 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.073 0.927 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.077 0.923 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.088 0.912 44 H 0.067 0.933 45 H 0.050 0.950 46 H 0.029 0.971 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.819 -21.921 -12.276 25.281 hybrid contribution 0.376 1.864 0.188 1.910 sum 3.196 -20.057 -12.088 23.635 Atomic orbital electron populations 1.70136 1.06120 1.25554 1.55612 1.25566 0.96005 1.00732 1.01687 0.85438 0.78544 0.81000 0.76922 1.19997 1.22022 1.21249 1.19364 0.92406 0.86302 1.40324 0.92649 1.44211 1.35004 1.02002 1.51923 1.20959 0.97203 0.85933 0.94685 1.21785 0.97047 0.99993 0.96928 1.22396 0.97912 0.94908 0.94576 0.85406 1.23080 0.98904 0.86998 0.93162 1.48626 1.36014 1.09553 1.39844 1.20725 0.78429 0.91485 0.78500 1.90688 1.57845 1.37211 1.61037 1.21868 0.88544 0.91891 0.94945 0.87644 1.22160 0.97606 0.98245 0.99882 1.21615 0.97661 0.95427 1.00499 1.22222 0.96531 1.01949 0.98689 1.22939 0.96453 0.85996 0.97202 1.88031 1.43325 1.33280 1.67012 1.21599 0.94967 0.87571 0.95269 1.21907 0.97699 0.97197 0.95839 0.89253 1.19898 0.88113 0.97266 0.88699 0.94117 0.93766 0.95125 0.89025 0.94801 0.87905 0.87985 0.88004 0.92664 0.89308 0.89405 0.92329 0.88113 0.88052 0.91202 0.93302 0.94963 0.97114 0.93324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.13 11.18 21.65 0.24 -54.88 16 2 C -0.04 -2.54 4.94 84.86 0.42 -2.12 16 3 Si 0.95 47.18 29.59 68.60 2.03 49.21 16 4 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 5 H -0.29 -14.66 7.11 99.48 0.71 -13.95 16 6 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 7 C -0.25 -14.35 9.67 84.03 0.81 -13.54 16 8 H 0.06 3.16 7.88 -2.91 -0.02 3.14 16 9 N -0.61 -30.12 2.89 -704.84 -2.04 -32.16 16 10 C 0.14 5.38 6.49 86.01 0.56 5.94 16 11 C -0.12 -3.54 4.95 30.38 0.15 -3.39 16 12 C -0.08 -1.99 3.72 -9.40 -0.03 -2.02 16 13 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 14 C 0.10 1.97 4.93 87.17 0.43 2.40 16 15 N -0.61 -18.73 2.85 -810.06 -2.31 -21.04 16 16 C 0.52 17.98 7.19 87.66 0.63 18.61 16 17 O -0.59 -27.53 16.86 15.88 0.27 -27.27 16 18 C 0.09 2.11 2.44 29.88 0.07 2.18 16 19 H 0.11 1.93 7.41 -2.39 -0.02 1.91 16 20 C -0.14 -2.36 5.30 30.68 0.16 -2.20 16 21 C -0.11 -1.20 6.03 30.71 0.19 -1.02 16 22 C -0.16 -1.91 6.14 30.69 0.19 -1.73 16 23 C 0.05 0.84 6.84 72.01 0.49 1.33 16 24 O -0.40 -11.17 9.95 -130.06 -1.29 -12.46 16 25 C 0.13 4.96 5.91 86.31 0.51 5.47 16 26 C -0.11 -3.61 2.70 -10.98 -0.03 -3.64 16 27 H 0.09 2.61 8.14 -2.38 -0.02 2.59 16 28 C 0.19 8.60 4.66 85.68 0.40 9.00 16 29 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 30 H 0.04 1.78 7.96 -2.39 -0.02 1.76 16 31 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.03 1.21 7.13 -2.39 -0.02 1.19 16 34 H 0.10 1.47 7.11 -2.38 -0.02 1.45 16 35 H 0.10 1.39 7.27 -2.39 -0.02 1.38 16 36 H 0.10 1.27 6.16 -2.39 -0.01 1.25 16 37 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 45 H 0.03 1.57 7.90 -2.39 -0.02 1.55 16 46 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 47 H 0.05 2.64 6.03 -2.39 -0.01 2.63 16 Total: -1.00 -79.03 355.53 2.78 -76.25 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: 0.94 Total: 7.07 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: 4.95 Total: 15.28 kcal Atomic # 7 Polarization: -103.97 SS G_CDS: -4.10 Total: -108.08 kcal Atomic # 8 Polarization: -38.70 SS G_CDS: -1.03 Total: -39.73 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -79.03 2.78 -76.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087935856.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.967 kcal (2) G-P(sol) polarization free energy of solvation -79.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds