Wall clock time and date at job start Fri Apr 10 2020 17:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 119.99878 * 2 1 4 4 H 1.48503 * 109.47478 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47361 * 300.00518 * 3 2 1 6 6 H 1.48508 * 109.46970 * 60.00463 * 3 2 1 7 7 C 1.38813 * 120.00295 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00367 * 185.96896 * 7 2 1 9 9 N 1.36936 * 119.99790 * 5.97082 * 7 2 1 10 10 C 1.44532 * 117.27113 * 33.94963 * 9 7 2 11 11 C 1.51346 * 113.15516 * 150.81867 * 10 9 7 12 12 C 1.49843 * 114.52608 * 35.13254 * 11 10 9 13 13 H 1.08997 * 108.54981 * 188.20823 * 12 11 10 14 14 C 1.53842 * 114.34675 * 66.19829 * 12 11 10 15 15 N 1.48096 * 103.41741 * 195.56875 * 14 12 11 16 16 C 1.34779 * 125.74790 * 204.43063 * 15 14 12 17 17 O 1.21277 * 119.99753 * 354.33870 * 16 15 14 18 18 C 1.50696 * 120.00229 * 174.34166 * 16 15 14 19 19 H 1.09001 * 109.48309 * 49.98706 * 18 16 15 20 20 C 1.53095 * 109.48254 * 289.95480 * 18 16 15 21 21 C 1.53174 * 109.16493 * 182.40789 * 20 18 16 22 22 C 1.53170 * 109.03702 * 56.98045 * 21 20 18 23 23 C 1.53098 * 109.16360 * 303.01935 * 22 21 20 24 24 O 1.42897 * 109.41614 * 57.60818 * 23 22 21 25 25 C 1.47466 * 108.51006 * 24.42398 * 15 14 12 26 26 C 1.54413 * 113.81974 * 309.85595 * 12 11 10 27 27 H 1.08998 * 112.97802 * 285.86364 * 26 12 11 28 28 C 1.45329 * 116.74062 * 213.36443 * 9 7 2 29 29 H 0.96994 * 120.00428 * 359.97438 * 1 2 3 30 30 H 1.09002 * 108.74655 * 29.87511 * 10 9 7 31 31 H 1.08993 * 108.74948 * 271.76793 * 10 9 7 32 32 H 1.09000 * 108.47189 * 273.82370 * 11 10 9 33 33 H 1.08994 * 108.34251 * 156.34516 * 11 10 9 34 34 H 1.09005 * 110.63169 * 77.08886 * 14 12 11 35 35 H 1.08998 * 110.77442 * 314.11537 * 14 12 11 36 36 H 1.09002 * 109.51968 * 302.31505 * 20 18 16 37 37 H 1.09004 * 109.52088 * 62.50247 * 20 18 16 38 38 H 1.09005 * 109.54199 * 297.11515 * 21 20 18 39 39 H 1.09000 * 109.61413 * 176.89356 * 21 20 18 40 40 H 1.09006 * 109.52304 * 183.11638 * 22 21 20 41 41 H 1.09000 * 109.52298 * 62.92423 * 22 21 20 42 42 H 1.08997 * 109.47824 * 297.62477 * 23 22 21 43 43 H 1.09000 * 109.48835 * 177.60001 * 23 22 21 44 44 H 1.08994 * 110.04113 * 242.80751 * 25 15 14 45 45 H 1.09008 * 110.03568 * 121.35453 * 25 15 14 46 46 H 1.09000 * 108.33963 * 93.57266 * 28 9 7 47 47 H 1.08997 * 109.67569 * 335.18164 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0859 -1.2047 0.0967 9 7 1.3312 -2.3848 -0.1244 10 6 0.1470 -2.3848 -0.9531 11 6 -0.1273 -3.7257 -1.5990 12 6 0.2336 -4.9089 -0.7534 13 1 0.1366 -5.8102 -1.3587 14 6 -0.6186 -5.0633 0.5181 15 7 0.1586 -6.0204 1.3386 16 6 -0.3426 -6.8230 2.2984 17 8 -1.5070 -6.7258 2.6231 18 6 0.5440 -7.8410 2.9682 19 1 1.4627 -7.3591 3.3026 20 6 0.8841 -8.9546 1.9741 21 6 1.7352 -10.0152 2.6791 22 6 0.9714 -10.5386 3.8993 23 6 0.6279 -9.3638 4.8190 24 8 -0.1376 -8.4001 4.0929 25 6 1.5732 -5.9476 0.9285 26 6 1.6613 -4.8453 -0.1686 27 1 2.4345 -5.0403 -0.9117 28 6 1.8788 -3.5304 0.5824 29 1 -0.4850 0.8400 0.0004 30 1 0.2677 -1.6367 -1.7366 31 1 -0.7104 -2.1099 -0.3388 32 1 0.4360 -3.7821 -2.5304 33 1 -1.1898 -3.7815 -1.8356 34 1 -1.5992 -5.4731 0.2758 35 1 -0.7195 -4.1086 1.0342 36 1 -0.0362 -9.4100 1.6085 37 1 1.4428 -8.5370 1.1365 38 1 2.6773 -9.5716 3.0014 39 1 1.9354 -10.8386 1.9935 40 1 1.5925 -11.2538 4.4386 41 1 0.0529 -11.0260 3.5725 42 1 1.5478 -8.9020 5.1777 43 1 0.0472 -9.7244 5.6681 44 1 1.8939 -6.9064 0.5213 45 1 2.1958 -5.6763 1.7812 46 1 1.3918 -3.5980 1.5552 47 1 2.9483 -3.3888 0.7380 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087935857.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:30 Heat of formation + Delta-G solvation = -56.906909 kcal Electronic energy + Delta-G solvation = -26991.214641 eV Core-core repulsion = 23367.316003 eV Total energy + Delta-G solvation = -3623.898638 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.60032 -39.37344 -37.79298 -35.44764 -33.92936 -32.89512 -31.57647 -31.38182 -30.12356 -27.70031 -25.95940 -25.20125 -24.27260 -23.61712 -21.85737 -21.51103 -20.65899 -19.38883 -18.13752 -17.17524 -16.56746 -16.37139 -15.98329 -15.78849 -15.19854 -14.94480 -14.81255 -14.44134 -13.99572 -13.90664 -13.64703 -13.29472 -13.03431 -13.00261 -12.89608 -12.72887 -12.34147 -12.24591 -11.74340 -11.58117 -11.51110 -11.35323 -11.17798 -10.88575 -10.80058 -10.71136 -10.59417 -10.18169 -10.14204 -9.92052 -9.75814 -9.72195 -9.48300 -9.40690 -8.47798 -8.40373 -6.55327 -5.70752 -3.30537 2.69269 2.78488 3.36395 3.43928 3.45618 3.83470 4.34085 4.46563 4.50469 4.51383 4.67802 4.72035 4.76344 4.85273 5.00297 5.07187 5.17624 5.25815 5.33164 5.43141 5.44157 5.50028 5.56993 5.59306 5.62952 5.70730 5.74747 5.78876 5.85869 5.95524 6.00875 6.07677 6.20499 6.28323 6.40010 6.48616 6.56794 6.71581 6.83610 6.92365 6.95184 7.43369 7.66442 7.82840 7.87534 8.30388 8.53421 9.32355 9.95410 10.33357 11.29506 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.025339 B = 0.003300 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.759569 B = 8483.482923 C = 8646.071900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.011 3.989 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.270 4.270 8 H 0.063 0.937 9 N -0.592 5.592 10 C 0.189 3.811 11 C -0.126 4.126 12 C -0.081 4.081 13 H 0.062 0.938 14 C 0.118 3.882 15 N -0.614 5.614 16 C 0.534 3.466 17 O -0.524 6.524 18 C 0.080 3.920 19 H 0.081 0.919 20 C -0.146 4.146 21 C -0.120 4.120 22 C -0.158 4.158 23 C 0.059 3.941 24 O -0.355 6.355 25 C 0.099 3.901 26 C -0.107 4.107 27 H 0.095 0.905 28 C 0.167 3.833 29 H 0.253 0.747 30 H 0.050 0.950 31 H 0.041 0.959 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.052 0.948 43 H 0.098 0.902 44 H 0.064 0.936 45 H 0.071 0.929 46 H 0.012 0.988 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.829 -19.918 2.456 20.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.188 4.188 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.400 4.400 8 H 0.080 0.920 9 N -0.315 5.315 10 C 0.064 3.936 11 C -0.165 4.165 12 C -0.100 4.100 13 H 0.080 0.920 14 C -0.003 4.003 15 N -0.349 5.349 16 C 0.321 3.679 17 O -0.400 6.400 18 C 0.019 3.981 19 H 0.099 0.901 20 C -0.184 4.184 21 C -0.158 4.158 22 C -0.196 4.196 23 C -0.018 4.018 24 O -0.273 6.273 25 C -0.024 4.024 26 C -0.127 4.127 27 H 0.113 0.887 28 C 0.041 3.959 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.070 0.930 43 H 0.116 0.884 44 H 0.083 0.917 45 H 0.089 0.911 46 H 0.029 0.971 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.809 -19.767 2.760 20.319 hybrid contribution 0.800 0.809 -0.074 1.140 sum 4.609 -18.959 2.686 19.695 Atomic orbital electron populations 1.70029 1.05213 1.25224 1.54080 1.25270 0.95406 0.98341 0.99820 0.86229 0.79279 0.84006 0.77271 1.20270 1.21617 1.21596 1.19283 0.90357 0.84017 1.46363 0.91980 1.42935 1.29347 1.05564 1.53683 1.19867 0.89889 0.90532 0.93356 1.20981 1.00396 0.96587 0.98535 1.21149 0.94685 0.98979 0.95208 0.91972 1.22258 0.94618 0.92917 0.90518 1.48628 1.09857 1.39750 1.36683 1.19692 0.88004 0.81044 0.79195 1.90715 1.17674 1.69606 1.61965 1.21830 0.94737 0.93337 0.88215 0.90141 1.22160 1.01592 0.96287 0.98396 1.21583 0.98357 0.98532 0.97287 1.22223 1.01354 0.98667 0.97366 1.22656 0.96326 0.88685 0.94136 1.88066 1.40960 1.57433 1.40839 1.22655 0.82075 0.99217 0.98473 1.22811 0.97437 0.96096 0.96352 0.88668 1.20503 0.97094 0.85417 0.92929 0.93694 0.93143 0.94135 0.92887 0.92547 0.90987 0.89821 0.90470 0.89881 0.91450 0.90986 0.90708 0.90866 0.92997 0.88423 0.91749 0.91084 0.97084 0.93757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.90 10.73 55.49 0.60 -25.31 16 2 C 0.01 0.30 5.08 -17.43 -0.09 0.21 16 3 Si 0.90 21.50 29.56 -169.99 -5.02 16.47 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.27 -7.25 9.18 -15.06 -0.14 -7.39 16 8 H 0.06 1.64 7.73 -52.49 -0.41 1.23 16 9 N -0.59 -14.29 3.18 -176.73 -0.56 -14.85 16 10 C 0.19 4.38 4.38 -5.93 -0.03 4.35 16 11 C -0.13 -2.24 5.45 -29.13 -0.16 -2.40 16 12 C -0.08 -1.27 2.69 -91.01 -0.25 -1.52 16 13 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 14 C 0.12 2.04 5.84 -2.73 -0.02 2.02 16 15 N -0.61 -9.56 3.34 -169.36 -0.57 -10.13 16 16 C 0.53 8.92 7.17 -10.99 -0.08 8.84 16 17 O -0.52 -11.04 16.86 -14.14 -0.24 -11.28 16 18 C 0.08 1.02 2.45 -27.84 -0.07 0.96 16 19 H 0.08 0.90 7.91 -51.93 -0.41 0.49 16 20 C -0.15 -1.44 5.32 -26.59 -0.14 -1.58 16 21 C -0.12 -0.89 6.03 -26.55 -0.16 -1.05 16 22 C -0.16 -1.19 6.14 -26.59 -0.16 -1.36 16 23 C 0.06 0.55 6.84 37.21 0.25 0.80 16 24 O -0.36 -5.00 9.96 -54.93 -0.55 -5.54 16 25 C 0.10 1.26 5.29 -2.04 -0.01 1.25 16 26 C -0.11 -1.63 3.93 -88.41 -0.35 -1.97 16 27 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 28 C 0.17 3.30 5.00 -4.68 -0.02 3.28 16 29 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.05 1.30 7.25 -51.93 -0.38 0.92 16 31 H 0.04 1.07 7.12 -51.93 -0.37 0.70 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 1.23 8.11 -51.93 -0.42 0.81 16 35 H 0.08 1.72 7.17 -51.93 -0.37 1.35 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.72 5.82 -51.93 -0.30 0.42 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.64 6.07 -51.93 -0.32 0.33 16 45 H 0.07 0.86 7.68 -51.92 -0.40 0.46 16 46 H 0.01 0.25 7.00 -51.93 -0.36 -0.12 16 47 H 0.04 0.85 7.82 -51.93 -0.41 0.45 16 LS Contribution 353.30 15.07 5.32 5.32 Total: -1.00 -32.58 353.30 -10.36 -42.94 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -7.93 Total: -2.07 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -1.41 Total: 4.45 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: -0.53 Total: -50.28 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.79 Total: -16.83 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.58 -10.36 -42.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087935857.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.965 kcal (2) G-P(sol) polarization free energy of solvation -32.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds