Wall clock time and date at job start Fri Apr 10 2020 17:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00188 * 2 1 4 4 H 1.08998 * 109.47143 * 12.73708 * 3 2 1 5 5 C 1.50703 * 109.46987 * 132.73604 * 3 2 1 6 6 O 1.21283 * 120.00044 * 4.99940 * 5 3 2 7 7 N 1.34768 * 120.00054 * 185.00204 * 5 3 2 8 8 C 1.47765 * 125.82131 * 179.97438 * 7 5 3 9 9 C 1.55972 * 104.12096 * 154.10652 * 8 7 5 10 10 H 1.09004 * 113.25548 * 160.75252 * 9 8 7 11 11 C 1.52896 * 106.47964 * 285.38853 * 9 8 7 12 12 C 1.52014 * 111.32392 * 167.46852 * 11 9 8 13 13 N 1.44329 * 113.65075 * 322.32201 * 12 11 9 14 14 C 1.36940 * 116.35011 * 186.60271 * 13 12 11 15 15 H 1.07999 * 119.99849 * 151.52316 * 14 13 12 16 16 C 1.38812 * 120.00195 * 331.52395 * 14 13 12 17 17 N 1.31610 * 120.00107 * 334.00130 * 16 14 13 18 18 Si 1.86798 * 119.99786 * 154.00117 * 16 14 13 19 19 H 1.48507 * 109.47479 * 59.99603 * 18 16 14 20 20 H 1.48494 * 109.47436 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46939 * 300.00158 * 18 16 14 22 22 C 1.43984 * 127.29202 * 6.62594 * 13 12 11 23 23 C 1.49957 * 116.09614 * 2.49994 * 22 13 12 24 24 H 1.09003 * 108.43146 * 141.33519 * 23 22 13 25 25 C 1.47616 * 125.81918 * 359.97438 * 7 5 3 26 26 C 1.53002 * 109.46959 * 252.73362 * 3 2 1 27 27 C 1.52997 * 117.49874 * 13.95772 * 26 3 2 28 28 C 1.52993 * 117.49939 * 305.33235 * 26 3 2 29 29 H 1.08995 * 109.46880 * 301.72550 * 1 2 3 30 30 H 1.09004 * 109.46859 * 61.72225 * 1 2 3 31 31 H 1.08993 * 109.47143 * 181.72067 * 1 2 3 32 32 H 1.08996 * 110.49743 * 35.44909 * 8 7 5 33 33 H 1.08995 * 110.50098 * 272.76727 * 8 7 5 34 34 H 1.08999 * 109.06759 * 288.92159 * 11 9 8 35 35 H 1.09004 * 109.06056 * 47.85137 * 11 9 8 36 36 H 1.08997 * 108.97233 * 200.87027 * 12 11 9 37 37 H 1.09006 * 107.88713 * 82.99563 * 12 11 9 38 38 H 0.96998 * 120.00268 * 180.02562 * 17 16 14 39 39 H 1.09003 * 108.16019 * 240.78224 * 22 13 12 40 40 H 1.09000 * 107.99732 * 124.09893 * 22 13 12 41 41 H 1.09001 * 110.08453 * 299.85775 * 25 7 5 42 42 H 1.08995 * 110.07911 * 61.42183 * 25 7 5 43 43 H 1.08999 * 115.54585 * 159.66708 * 26 3 2 44 44 H 1.08999 * 117.50287 * 0.02562 * 27 26 3 45 45 H 1.09005 * 117.49430 * 145.02102 * 27 26 3 46 46 H 1.09005 * 117.49873 * 214.97821 * 28 26 3 47 47 H 1.08998 * 117.50377 * 359.97438 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.2424 2.0451 0.2266 5 6 3.0955 1.3721 1.0436 6 8 3.4085 0.3741 1.6576 7 7 3.7180 2.5407 1.2947 8 6 4.7938 2.7521 2.2853 9 6 5.5830 3.9793 1.7341 10 1 6.1934 4.4733 2.4901 11 6 6.4025 3.4708 0.5477 12 6 6.9756 4.6223 -0.2624 13 7 6.0822 5.7500 -0.3780 14 6 6.4834 6.7604 -1.2107 15 1 5.7473 7.3761 -1.7062 16 6 7.8360 6.9932 -1.4180 17 7 8.7119 6.6465 -0.4989 18 14 8.4131 7.7984 -3.0017 19 1 7.7943 9.1425 -3.1277 20 1 9.8917 7.9340 -2.9779 21 1 8.0121 6.9585 -4.1588 22 6 4.8167 5.9318 0.2843 23 6 4.4106 4.8495 1.2395 24 1 3.9308 5.3129 2.1016 25 6 3.4415 3.8278 0.6268 26 6 2.6089 1.5972 -1.3775 27 6 2.2136 0.6716 -2.5299 28 6 3.6210 0.5943 -1.9347 29 1 -0.3633 0.5404 0.8741 30 1 -0.3633 0.4869 -0.9051 31 1 -0.3633 -1.0271 0.0309 32 1 5.4400 1.8760 2.3398 33 1 4.3720 2.9780 3.2646 34 1 7.2100 2.8389 0.9175 35 1 5.7581 2.8789 -0.1024 36 1 7.2201 4.2648 -1.2626 37 1 7.8933 4.9509 0.2257 38 1 9.6571 6.8095 -0.6436 39 1 4.0433 6.0191 -0.4789 40 1 4.8562 6.8725 0.8336 41 1 3.6195 3.7392 -0.4449 42 1 2.4112 4.1316 0.8118 43 1 2.7650 2.6509 -1.6086 44 1 1.5268 -0.1448 -2.3069 45 1 2.1095 1.1165 -3.5196 46 1 4.4427 0.9881 -2.5329 47 1 3.8608 -0.2732 -1.3199 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087951932.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:33 Heat of formation + Delta-G solvation = -16.411092 kcal Electronic energy + Delta-G solvation = -27373.319207 eV Core-core repulsion = 23751.176599 eV Total energy + Delta-G solvation = -3622.142607 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.61887 -39.14089 -37.56832 -36.07430 -35.53773 -32.60986 -31.59745 -30.47769 -29.17172 -27.67880 -26.25589 -25.45881 -23.58315 -22.41454 -22.23187 -21.54222 -20.92498 -19.35997 -17.92779 -17.25360 -16.92891 -16.91081 -16.27764 -15.73198 -15.34304 -14.88464 -14.66995 -14.26179 -14.12202 -13.85607 -13.74216 -13.25810 -13.04672 -12.97927 -12.57215 -12.45308 -12.36698 -11.83439 -11.73167 -11.56383 -11.45683 -11.27130 -11.14384 -10.76537 -10.72940 -10.60863 -10.39624 -10.27873 -10.23271 -10.05609 -9.76025 -9.68734 -9.57020 -9.29909 -8.54126 -8.43419 -6.61524 -5.65526 -3.30098 2.62403 2.81599 3.37225 3.44035 3.46123 3.61399 3.80960 4.44202 4.48467 4.55801 4.71205 4.74901 4.89778 4.99671 5.07043 5.09169 5.16265 5.23921 5.25440 5.30529 5.38747 5.43479 5.55205 5.56576 5.65116 5.69832 5.83954 5.87004 5.94273 5.99415 6.07344 6.17187 6.19165 6.26929 6.32446 6.54404 6.57799 6.68010 6.77304 6.83615 6.86670 7.28792 7.60720 7.79705 7.90303 8.25216 8.51526 9.27044 9.96927 10.27260 11.20780 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.019580 B = 0.004055 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.723468 B = 6902.787524 C = 7570.772858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.356 6.356 3 C 0.108 3.892 4 H 0.089 0.911 5 C 0.529 3.471 6 O -0.530 6.530 7 N -0.610 5.610 8 C 0.107 3.893 9 C -0.081 4.081 10 H 0.100 0.900 11 C -0.120 4.120 12 C 0.157 3.843 13 N -0.583 5.583 14 C -0.274 4.274 15 H 0.064 0.936 16 C 0.010 3.990 17 N -0.885 5.885 18 Si 0.896 3.104 19 H -0.282 1.282 20 H -0.291 1.291 21 H -0.284 1.284 22 C 0.176 3.824 23 C -0.098 4.098 24 H 0.073 0.927 25 C 0.104 3.896 26 C -0.182 4.182 27 C -0.163 4.163 28 C -0.162 4.162 29 H 0.042 0.958 30 H 0.045 0.955 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.049 0.951 36 H 0.017 0.983 37 H 0.076 0.924 38 H 0.254 0.746 39 H 0.013 0.987 40 H 0.024 0.976 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.122 0.878 44 H 0.100 0.900 45 H 0.094 0.906 46 H 0.097 0.903 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.509 -8.960 1.460 17.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.273 6.273 3 C 0.047 3.953 4 H 0.107 0.893 5 C 0.317 3.683 6 O -0.406 6.406 7 N -0.346 5.346 8 C -0.015 4.015 9 C -0.100 4.100 10 H 0.118 0.882 11 C -0.158 4.158 12 C 0.032 3.968 13 N -0.307 5.307 14 C -0.403 4.403 15 H 0.082 0.918 16 C -0.191 4.191 17 N -0.528 5.528 18 Si 0.726 3.274 19 H -0.208 1.208 20 H -0.217 1.217 21 H -0.211 1.211 22 C 0.049 3.951 23 C -0.117 4.117 24 H 0.092 0.908 25 C -0.018 4.018 26 C -0.201 4.201 27 C -0.200 4.200 28 C -0.199 4.199 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.035 0.965 37 H 0.093 0.907 38 H 0.064 0.936 39 H 0.031 0.969 40 H 0.042 0.958 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.140 0.860 44 H 0.119 0.881 45 H 0.112 0.888 46 H 0.115 0.885 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -14.143 -9.808 1.836 17.309 hybrid contribution 0.129 0.794 -0.849 1.169 sum -14.014 -9.014 0.987 16.692 Atomic orbital electron populations 1.22921 0.80766 1.03101 1.00088 1.88000 1.19567 1.25202 1.94512 1.21323 0.94584 0.86626 0.92790 0.89325 1.20102 0.82930 0.81962 0.83353 1.90694 1.64982 1.34091 1.50873 1.48600 1.37849 1.08448 1.39679 1.22682 0.88622 0.99162 0.91013 1.22223 0.95672 0.93774 0.98348 0.88166 1.21643 0.98745 0.99193 0.96218 1.20217 0.95119 0.84795 0.96708 1.42623 1.18505 1.18078 1.51537 1.19043 0.90681 1.11498 1.19091 0.91811 1.24960 0.96744 0.99438 0.97913 1.70015 1.01698 1.49729 1.31319 0.86470 0.77348 0.79275 0.84348 1.20813 1.21687 1.21098 1.19358 0.89045 0.94033 0.92624 1.21493 0.95412 0.95603 0.99226 0.90844 1.22331 0.98727 0.82622 0.98153 1.22676 1.06348 0.98078 0.92962 1.22898 0.99053 1.01796 0.96217 1.22895 0.92768 1.00983 1.03287 0.93933 0.93637 0.89249 0.90435 0.91824 0.92416 0.93262 0.96507 0.90670 0.93606 0.96920 0.95793 0.90392 0.91750 0.86021 0.88145 0.88768 0.88482 0.88368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.46 101.05 1.06 1.30 16 2 O -0.36 -4.63 8.33 -55.09 -0.46 -5.09 16 3 C 0.11 1.36 2.49 -27.88 -0.07 1.29 16 4 H 0.09 0.91 7.63 -51.93 -0.40 0.52 16 5 C 0.53 8.30 7.03 -10.99 -0.08 8.22 16 6 O -0.53 -10.28 16.76 -14.31 -0.24 -10.52 16 7 N -0.61 -8.89 2.82 -169.56 -0.48 -9.37 16 8 C 0.11 1.57 6.23 -1.76 -0.01 1.55 16 9 C -0.08 -1.30 3.72 -88.48 -0.33 -1.63 16 10 H 0.10 1.63 8.14 -51.93 -0.42 1.20 16 11 C -0.12 -2.20 5.03 -27.29 -0.14 -2.34 16 12 C 0.16 3.61 5.18 -5.70 -0.03 3.59 16 13 N -0.58 -13.86 3.22 -179.33 -0.58 -14.44 16 14 C -0.27 -7.28 9.23 -15.06 -0.14 -7.42 16 15 H 0.06 1.68 7.95 -52.49 -0.42 1.26 16 16 C 0.01 0.27 4.91 -17.43 -0.09 0.18 16 17 N -0.88 -24.94 11.04 55.49 0.61 -24.33 16 18 Si 0.90 21.24 29.63 -169.99 -5.04 16.20 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 C 0.18 3.41 5.68 -6.89 -0.04 3.37 16 23 C -0.10 -1.51 2.69 -91.23 -0.25 -1.75 16 24 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 25 C 0.10 1.40 4.84 -3.14 -0.02 1.38 16 26 C -0.18 -2.18 5.04 -90.62 -0.46 -2.63 16 27 C -0.16 -1.74 9.88 -26.73 -0.26 -2.00 16 28 C -0.16 -2.08 9.87 -26.73 -0.26 -2.35 16 29 H 0.04 0.34 8.12 -51.93 -0.42 -0.08 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.08 1.20 7.91 -51.93 -0.41 0.79 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.05 0.90 6.88 -51.93 -0.36 0.55 16 36 H 0.02 0.42 8.12 -51.93 -0.42 0.00 16 37 H 0.08 1.99 5.79 -51.93 -0.30 1.69 16 38 H 0.25 6.94 8.31 -40.82 -0.34 6.61 16 39 H 0.01 0.25 7.78 -51.93 -0.40 -0.16 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.08 1.12 5.69 -51.93 -0.30 0.82 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.12 1.42 6.20 -51.93 -0.32 1.10 16 44 H 0.10 1.05 6.91 -51.93 -0.36 0.69 16 45 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 46 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 47 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 362.26 15.07 5.46 5.46 Total: -1.00 -31.33 362.26 -9.72 -41.04 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -7.89 Total: 0.27 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -1.11 Total: 0.77 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: -0.44 Total: -48.14 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.70 Total: -15.61 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.04 Total: 16.20 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.33 -9.72 -41.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087951932.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.632 kcal (2) G-P(sol) polarization free energy of solvation -31.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds