Wall clock time and date at job start Fri Apr 10 2020 17:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00188 * 2 1 4 4 H 1.08998 * 109.47143 * 12.73708 * 3 2 1 5 5 C 1.50703 * 109.46987 * 132.73604 * 3 2 1 6 6 O 1.21283 * 120.00044 * 4.99940 * 5 3 2 7 7 N 1.34768 * 120.00054 * 185.00204 * 5 3 2 8 8 C 1.47765 * 125.82131 * 179.97438 * 7 5 3 9 9 C 1.55972 * 104.12096 * 154.10652 * 8 7 5 10 10 H 1.09004 * 113.25548 * 160.75252 * 9 8 7 11 11 C 1.52896 * 106.47964 * 285.38853 * 9 8 7 12 12 C 1.52014 * 111.32392 * 167.46852 * 11 9 8 13 13 N 1.44329 * 113.65075 * 322.32201 * 12 11 9 14 14 C 1.36940 * 116.35011 * 186.60271 * 13 12 11 15 15 H 1.07999 * 119.99849 * 151.52316 * 14 13 12 16 16 C 1.38812 * 120.00195 * 331.52395 * 14 13 12 17 17 N 1.31610 * 120.00107 * 334.00130 * 16 14 13 18 18 Si 1.86798 * 119.99786 * 154.00117 * 16 14 13 19 19 H 1.48507 * 109.47479 * 59.99603 * 18 16 14 20 20 H 1.48494 * 109.47436 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46939 * 300.00158 * 18 16 14 22 22 C 1.43984 * 127.29202 * 6.62594 * 13 12 11 23 23 C 1.49957 * 116.09614 * 2.49994 * 22 13 12 24 24 H 1.09003 * 108.43146 * 141.33519 * 23 22 13 25 25 C 1.47616 * 125.81918 * 359.97438 * 7 5 3 26 26 C 1.53002 * 109.46959 * 252.73362 * 3 2 1 27 27 C 1.52997 * 117.49874 * 13.95772 * 26 3 2 28 28 C 1.52993 * 117.49939 * 305.33235 * 26 3 2 29 29 H 1.08995 * 109.46880 * 301.72550 * 1 2 3 30 30 H 1.09004 * 109.46859 * 61.72225 * 1 2 3 31 31 H 1.08993 * 109.47143 * 181.72067 * 1 2 3 32 32 H 1.08996 * 110.49743 * 35.44909 * 8 7 5 33 33 H 1.08995 * 110.50098 * 272.76727 * 8 7 5 34 34 H 1.08999 * 109.06759 * 288.92159 * 11 9 8 35 35 H 1.09004 * 109.06056 * 47.85137 * 11 9 8 36 36 H 1.08997 * 108.97233 * 200.87027 * 12 11 9 37 37 H 1.09006 * 107.88713 * 82.99563 * 12 11 9 38 38 H 0.96998 * 120.00268 * 180.02562 * 17 16 14 39 39 H 1.09003 * 108.16019 * 240.78224 * 22 13 12 40 40 H 1.09000 * 107.99732 * 124.09893 * 22 13 12 41 41 H 1.09001 * 110.08453 * 299.85775 * 25 7 5 42 42 H 1.08995 * 110.07911 * 61.42183 * 25 7 5 43 43 H 1.08999 * 115.54585 * 159.66708 * 26 3 2 44 44 H 1.08999 * 117.50287 * 0.02562 * 27 26 3 45 45 H 1.09005 * 117.49430 * 145.02102 * 27 26 3 46 46 H 1.09005 * 117.49873 * 214.97821 * 28 26 3 47 47 H 1.08998 * 117.50377 * 359.97438 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.2424 2.0451 0.2266 5 6 3.0955 1.3721 1.0436 6 8 3.4085 0.3741 1.6576 7 7 3.7180 2.5407 1.2947 8 6 4.7938 2.7521 2.2853 9 6 5.5830 3.9793 1.7341 10 1 6.1934 4.4733 2.4901 11 6 6.4025 3.4708 0.5477 12 6 6.9756 4.6223 -0.2624 13 7 6.0822 5.7500 -0.3780 14 6 6.4834 6.7604 -1.2107 15 1 5.7473 7.3761 -1.7062 16 6 7.8360 6.9932 -1.4180 17 7 8.7119 6.6465 -0.4989 18 14 8.4131 7.7984 -3.0017 19 1 7.7943 9.1425 -3.1277 20 1 9.8917 7.9340 -2.9779 21 1 8.0121 6.9585 -4.1588 22 6 4.8167 5.9318 0.2843 23 6 4.4106 4.8495 1.2395 24 1 3.9308 5.3129 2.1016 25 6 3.4415 3.8278 0.6268 26 6 2.6089 1.5972 -1.3775 27 6 2.2136 0.6716 -2.5299 28 6 3.6210 0.5943 -1.9347 29 1 -0.3633 0.5404 0.8741 30 1 -0.3633 0.4869 -0.9051 31 1 -0.3633 -1.0271 0.0309 32 1 5.4400 1.8760 2.3398 33 1 4.3720 2.9780 3.2646 34 1 7.2100 2.8389 0.9175 35 1 5.7581 2.8789 -0.1024 36 1 7.2201 4.2648 -1.2626 37 1 7.8933 4.9509 0.2257 38 1 9.6571 6.8095 -0.6436 39 1 4.0433 6.0191 -0.4789 40 1 4.8562 6.8725 0.8336 41 1 3.6195 3.7392 -0.4449 42 1 2.4112 4.1316 0.8118 43 1 2.7650 2.6509 -1.6086 44 1 1.5268 -0.1448 -2.3069 45 1 2.1095 1.1165 -3.5196 46 1 4.4427 0.9881 -2.5329 47 1 3.8608 -0.2732 -1.3199 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087951932.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:32 Heat of formation + Delta-G solvation = -34.148508 kcal Electronic energy + Delta-G solvation = -27374.088359 eV Core-core repulsion = 23751.176599 eV Total energy + Delta-G solvation = -3622.911760 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.80145 -40.30557 -38.77285 -37.27943 -36.85992 -34.22127 -33.14248 -32.12300 -30.33599 -28.88798 -27.22527 -26.89416 -25.19988 -23.69271 -23.35357 -23.04565 -21.94096 -20.45744 -19.43401 -18.87332 -18.15197 -17.89321 -17.25096 -17.04930 -16.82333 -16.38552 -15.78813 -15.63675 -15.51052 -15.25617 -15.00280 -14.65665 -14.51021 -14.15573 -13.83353 -13.71973 -13.62019 -13.29310 -12.98386 -12.87364 -12.73913 -12.50557 -12.39210 -12.30333 -12.21328 -12.06172 -11.84503 -11.73546 -11.47863 -11.32593 -11.25094 -11.13438 -10.93280 -10.51280 -10.38195 -9.66298 -8.61778 -7.67704 -5.37245 1.46905 1.47615 1.50819 1.56542 1.74922 2.53005 2.71835 2.87387 3.23486 3.39473 3.50369 3.59164 3.73785 3.77954 3.81794 3.88710 4.11150 4.17170 4.19949 4.29112 4.39312 4.48636 4.52928 4.55615 4.57673 4.66393 4.69032 4.76245 4.79632 4.85190 4.90194 4.96616 5.00214 5.06067 5.08925 5.15955 5.21120 5.27079 5.31071 5.36994 5.43704 5.71910 5.94173 6.04603 6.46095 6.46933 7.08667 7.24486 8.08142 8.27606 9.13709 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.019580 B = 0.004055 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.723468 B = 6902.787524 C = 7570.772858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.383 6.383 3 C 0.113 3.887 4 H 0.119 0.881 5 C 0.524 3.476 6 O -0.576 6.576 7 N -0.608 5.608 8 C 0.114 3.886 9 C -0.080 4.080 10 H 0.098 0.902 11 C -0.108 4.108 12 C 0.167 3.833 13 N -0.594 5.594 14 C -0.285 4.285 15 H 0.065 0.935 16 C -0.040 4.040 17 N -0.914 5.914 18 Si 0.954 3.046 19 H -0.272 1.272 20 H -0.295 1.295 21 H -0.283 1.283 22 C 0.172 3.828 23 C -0.094 4.094 24 H 0.103 0.897 25 C 0.110 3.890 26 C -0.180 4.180 27 C -0.139 4.139 28 C -0.185 4.185 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.049 0.951 36 H -0.014 1.014 37 H 0.042 0.958 38 H 0.249 0.751 39 H 0.027 0.973 40 H 0.013 0.987 41 H 0.071 0.929 42 H 0.103 0.897 43 H 0.129 0.871 44 H 0.105 0.895 45 H 0.112 0.888 46 H 0.091 0.909 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.340 -8.560 1.225 19.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.301 6.301 3 C 0.052 3.948 4 H 0.137 0.863 5 C 0.313 3.687 6 O -0.455 6.455 7 N -0.343 5.343 8 C -0.008 4.008 9 C -0.099 4.099 10 H 0.117 0.883 11 C -0.146 4.146 12 C 0.042 3.958 13 N -0.318 5.318 14 C -0.415 4.415 15 H 0.083 0.917 16 C -0.238 4.238 17 N -0.559 5.559 18 Si 0.783 3.217 19 H -0.198 1.198 20 H -0.222 1.222 21 H -0.210 1.210 22 C 0.047 3.953 23 C -0.113 4.113 24 H 0.121 0.879 25 C -0.012 4.012 26 C -0.199 4.199 27 C -0.176 4.176 28 C -0.222 4.222 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.117 0.883 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.004 0.996 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.044 0.956 40 H 0.031 0.969 41 H 0.089 0.911 42 H 0.121 0.879 43 H 0.147 0.853 44 H 0.123 0.877 45 H 0.130 0.870 46 H 0.110 0.890 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.014 -9.382 1.592 19.494 hybrid contribution 0.997 0.668 -0.778 1.430 sum -16.017 -8.714 0.815 18.252 Atomic orbital electron populations 1.23159 0.78650 1.04297 1.01432 1.87981 1.21946 1.25585 1.94562 1.21335 0.94271 0.87502 0.91718 0.86301 1.20756 0.83259 0.81310 0.83356 1.90669 1.66580 1.35573 1.52704 1.48646 1.37397 1.08765 1.39443 1.22594 0.88519 0.97656 0.92053 1.22153 0.95749 0.94767 0.97210 0.88346 1.21467 0.99128 0.97237 0.96724 1.19922 0.94491 0.86071 0.95337 1.42838 1.19704 1.17471 1.51774 1.19383 0.90905 1.11657 1.19587 0.91703 1.25660 0.97006 1.00737 1.00350 1.70167 1.01526 1.51388 1.32782 0.85540 0.76472 0.78780 0.80939 1.19762 1.22165 1.20972 1.19485 0.87187 0.95198 0.93434 1.21427 0.95582 0.95048 0.99254 0.87896 1.22361 1.00161 0.81288 0.97398 1.22722 1.05673 0.98232 0.93251 1.22954 0.96897 1.01194 0.96529 1.22791 0.94061 1.01013 1.04315 0.93072 0.91730 0.88276 0.91759 0.89542 0.92107 0.93199 0.99612 0.94091 0.94153 0.95569 0.96920 0.91116 0.87875 0.85344 0.87692 0.86990 0.89009 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.46 113.37 1.19 1.48 16 2 O -0.38 -9.22 8.33 -129.99 -1.08 -10.31 16 3 C 0.11 2.55 2.49 29.85 0.07 2.63 16 4 H 0.12 1.93 7.63 -2.39 -0.02 1.91 16 5 C 0.52 15.56 7.03 87.66 0.62 16.18 16 6 O -0.58 -22.12 16.76 15.95 0.27 -21.85 16 7 N -0.61 -16.26 2.82 -808.76 -2.28 -18.54 16 8 C 0.11 3.11 6.23 87.17 0.54 3.65 16 9 C -0.08 -2.44 3.72 -9.41 -0.04 -2.47 16 10 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 11 C -0.11 -3.97 5.03 30.23 0.15 -3.82 16 12 C 0.17 7.95 5.18 86.46 0.45 8.39 16 13 N -0.59 -28.31 3.22 -721.29 -2.32 -30.64 16 14 C -0.28 -15.24 9.23 84.03 0.78 -14.47 16 15 H 0.07 3.39 7.95 -2.91 -0.02 3.37 16 16 C -0.04 -2.19 4.91 84.86 0.42 -1.77 16 17 N -0.91 -52.99 11.04 21.65 0.24 -52.75 16 18 Si 0.95 44.12 29.63 68.60 2.03 46.16 16 19 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 20 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16 21 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 22 C 0.17 6.41 5.68 85.87 0.49 6.90 16 23 C -0.09 -2.63 2.69 -11.19 -0.03 -2.66 16 24 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 25 C 0.11 2.56 4.84 86.36 0.42 2.98 16 26 C -0.18 -3.91 5.04 -10.80 -0.05 -3.96 16 27 C -0.14 -2.65 9.88 30.59 0.30 -2.35 16 28 C -0.18 -4.66 9.87 30.59 0.30 -4.36 16 29 H 0.05 0.65 8.12 -2.39 -0.02 0.64 16 30 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.06 1.95 7.91 -2.39 -0.02 1.93 16 33 H 0.09 2.02 8.14 -2.39 -0.02 2.01 16 34 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.05 1.83 6.88 -2.39 -0.02 1.81 16 36 H -0.01 -0.75 8.12 -2.39 -0.02 -0.77 16 37 H 0.04 2.28 5.79 -2.38 -0.01 2.26 16 38 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 39 H 0.03 0.93 7.78 -2.39 -0.02 0.91 16 40 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.07 1.80 5.69 -2.39 -0.01 1.79 16 42 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.13 2.62 6.20 -2.39 -0.01 2.61 16 44 H 0.10 1.93 6.91 -2.39 -0.02 1.92 16 45 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 46 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 47 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -70.03 362.26 3.40 -66.63 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.94 Total: 14.94 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: 5.60 Total: 6.36 kcal Atomic # 7 Polarization: -97.56 SS G_CDS: -4.37 Total: -101.93 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -0.82 Total: -32.16 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.16 kcal Total: -70.03 3.40 -66.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087951932.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.485 kcal (2) G-P(sol) polarization free energy of solvation -70.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds