Wall clock time and date at job start Fri Apr 10 2020 17:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99728 * 2 1 4 4 H 1.08997 * 109.47021 * 341.81922 * 3 2 1 5 5 C 1.50700 * 109.46800 * 221.81857 * 3 2 1 6 6 O 1.21285 * 120.00334 * 352.44495 * 5 3 2 7 7 N 1.34775 * 119.99805 * 172.44168 * 5 3 2 8 8 C 1.47758 * 125.81927 * 175.12300 * 7 5 3 9 9 C 1.55972 * 104.12200 * 154.10427 * 8 7 5 10 10 H 1.09003 * 113.25516 * 160.74398 * 9 8 7 11 11 C 1.52894 * 106.48238 * 285.38888 * 9 8 7 12 12 C 1.52018 * 111.32202 * 167.46602 * 11 9 8 13 13 N 1.44321 * 113.65511 * 322.32184 * 12 11 9 14 14 C 1.36933 * 116.35347 * 186.60643 * 13 12 11 15 15 H 1.08008 * 119.99719 * 162.67826 * 14 13 12 16 16 C 1.38809 * 120.00428 * 342.67306 * 14 13 12 17 17 N 1.31627 * 119.99567 * 7.00556 * 16 14 13 18 18 Si 1.86794 * 119.99989 * 187.00326 * 16 14 13 19 19 H 1.48499 * 109.47043 * 90.00376 * 18 16 14 20 20 H 1.48512 * 109.47016 * 209.99963 * 18 16 14 21 21 H 1.48493 * 109.47718 * 329.99870 * 18 16 14 22 22 C 1.43999 * 127.28907 * 6.62321 * 13 12 11 23 23 C 1.49959 * 116.09649 * 2.50695 * 22 13 12 24 24 H 1.08993 * 108.42988 * 141.33073 * 23 22 13 25 25 C 1.47614 * 125.82023 * 355.11767 * 7 5 3 26 26 C 1.52997 * 109.47045 * 101.81979 * 3 2 1 27 27 C 1.52995 * 117.50202 * 6.16558 * 26 3 2 28 28 C 1.52997 * 117.49974 * 297.50232 * 26 3 2 29 29 H 1.09002 * 109.46457 * 184.65392 * 1 2 3 30 30 H 1.09004 * 109.47350 * 304.64974 * 1 2 3 31 31 H 1.08996 * 109.47153 * 64.65817 * 1 2 3 32 32 H 1.09002 * 110.50434 * 35.44838 * 8 7 5 33 33 H 1.09003 * 110.50240 * 272.76511 * 8 7 5 34 34 H 1.08998 * 109.06220 * 288.91726 * 11 9 8 35 35 H 1.08998 * 109.05976 * 47.85210 * 11 9 8 36 36 H 1.09000 * 108.96873 * 200.86725 * 12 11 9 37 37 H 1.09004 * 107.88700 * 82.99912 * 12 11 9 38 38 H 0.97001 * 119.99565 * 179.97438 * 17 16 14 39 39 H 1.09001 * 108.15952 * 240.78406 * 22 13 12 40 40 H 1.09003 * 107.99628 * 124.09959 * 22 13 12 41 41 H 1.09001 * 110.08395 * 299.86222 * 25 7 5 42 42 H 1.09000 * 110.08053 * 61.42222 * 25 7 5 43 43 H 1.09005 * 115.54805 * 151.83657 * 26 3 2 44 44 H 1.09002 * 117.49744 * 359.97438 * 27 26 3 45 45 H 1.08997 * 117.49901 * 145.02274 * 27 26 3 46 46 H 1.09005 * 117.49968 * 214.98215 * 28 26 3 47 47 H 1.08999 * 117.49837 * 359.97438 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2660 2.0345 -0.3206 5 6 3.1818 1.3337 -0.9474 6 8 3.5745 0.3056 -1.4571 7 7 3.7933 2.5015 -1.2283 8 6 5.0082 2.6649 -2.0532 9 6 4.8997 4.1191 -2.6067 10 1 5.8518 4.5190 -2.9555 11 6 3.8313 4.0885 -3.7000 12 6 3.4146 5.4932 -4.1050 13 7 3.3510 6.4196 -3.0002 14 6 2.8476 7.6625 -3.2774 15 1 2.5114 8.3006 -2.4733 16 6 2.7694 8.1025 -4.5915 17 7 3.0481 7.2783 -5.5792 18 14 2.2685 9.8643 -4.9583 19 1 3.4787 10.7236 -5.0041 20 1 1.5731 9.9185 -6.2694 21 1 1.3555 10.3514 -3.8934 22 6 3.7578 6.1835 -1.6392 23 6 4.3624 4.8410 -1.3549 24 1 5.1823 4.9747 -0.6493 25 6 3.3634 3.8353 -0.7644 26 6 2.4875 1.6513 1.4119 27 6 2.4051 0.5533 2.4742 28 6 1.4303 1.7329 2.5149 29 1 -0.3632 -1.0243 0.0834 30 1 -0.3634 0.5843 0.8454 31 1 -0.3633 0.4398 -0.9287 32 1 5.0140 1.9446 -2.8713 33 1 5.9032 2.5554 -1.4406 34 1 4.2225 3.5532 -4.5651 35 1 2.9531 3.5630 -3.3249 36 1 2.4355 5.4486 -4.5820 37 1 4.1403 5.8617 -4.8301 38 1 2.9931 7.5857 -6.4975 39 1 2.8851 6.3057 -0.9977 40 1 4.4858 6.9481 -1.3679 41 1 2.3577 4.0509 -1.1252 42 1 3.3881 3.8787 0.3245 43 1 3.3276 2.3436 1.4678 44 1 2.0103 -0.4153 2.1673 45 1 3.1907 0.5235 3.2292 46 1 1.5751 2.4786 3.2966 47 1 0.3947 1.5407 2.2345 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087951933.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:38 Heat of formation + Delta-G solvation = -5.171183 kcal Electronic energy + Delta-G solvation = -27085.477709 eV Core-core repulsion = 23463.822500 eV Total energy + Delta-G solvation = -3621.655208 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.59732 -39.20442 -37.67614 -36.06756 -35.56269 -32.63797 -31.62768 -30.30787 -29.24578 -27.69031 -26.20316 -25.40309 -23.62765 -22.55735 -22.09851 -21.48355 -21.03332 -19.50382 -17.85805 -17.27594 -17.13250 -16.80586 -16.26253 -15.83238 -15.24931 -14.88961 -14.78734 -14.24239 -14.04901 -13.74130 -13.55245 -13.42517 -13.06991 -12.93123 -12.65339 -12.51751 -12.26104 -12.02401 -11.79295 -11.62838 -11.55700 -11.37361 -10.89675 -10.78550 -10.70671 -10.58391 -10.42610 -10.23843 -10.13234 -10.06661 -9.75303 -9.61850 -9.58574 -9.32429 -8.50721 -8.31230 -6.76922 -5.61128 -3.14137 2.63421 2.76435 3.36908 3.43152 3.44450 3.54506 3.81868 4.32454 4.44659 4.48335 4.65713 4.74499 4.79182 4.92693 4.97134 5.05509 5.12147 5.17499 5.32272 5.39612 5.41087 5.41331 5.52116 5.57568 5.58982 5.67102 5.73641 5.85242 5.88368 5.95472 6.01083 6.04083 6.18309 6.28145 6.36382 6.60087 6.63863 6.72701 6.79821 6.83780 6.86114 7.60291 7.67569 7.86495 8.10720 8.25534 8.51578 9.32594 10.04132 10.26699 11.27727 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.020594 B = 0.003589 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.318807 B = 7800.465636 C = 8096.501096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.355 6.355 3 C 0.107 3.893 4 H 0.091 0.909 5 C 0.531 3.469 6 O -0.527 6.527 7 N -0.613 5.613 8 C 0.107 3.893 9 C -0.082 4.082 10 H 0.098 0.902 11 C -0.132 4.132 12 C 0.189 3.811 13 N -0.603 5.603 14 C -0.257 4.257 15 H 0.071 0.929 16 C 0.002 3.998 17 N -0.911 5.911 18 Si 0.907 3.093 19 H -0.287 1.287 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.179 3.821 23 C -0.097 4.097 24 H 0.073 0.927 25 C 0.106 3.894 26 C -0.176 4.176 27 C -0.159 4.159 28 C -0.175 4.175 29 H 0.090 0.910 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.070 0.930 38 H 0.249 0.751 39 H 0.011 0.989 40 H 0.021 0.979 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.117 0.883 44 H 0.106 0.894 45 H 0.093 0.907 46 H 0.098 0.902 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.437 -10.428 13.902 17.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.272 6.272 3 C 0.046 3.954 4 H 0.108 0.892 5 C 0.318 3.682 6 O -0.403 6.403 7 N -0.348 5.348 8 C -0.015 4.015 9 C -0.102 4.102 10 H 0.116 0.884 11 C -0.171 4.171 12 C 0.065 3.935 13 N -0.330 5.330 14 C -0.386 4.386 15 H 0.089 0.911 16 C -0.195 4.195 17 N -0.559 5.559 18 Si 0.737 3.263 19 H -0.214 1.214 20 H -0.218 1.218 21 H -0.207 1.207 22 C 0.053 3.947 23 C -0.117 4.117 24 H 0.092 0.908 25 C -0.016 4.016 26 C -0.195 4.195 27 C -0.196 4.196 28 C -0.212 4.212 29 H 0.108 0.892 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.029 0.971 40 H 0.039 0.961 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.135 0.865 44 H 0.125 0.875 45 H 0.112 0.888 46 H 0.116 0.884 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.170 -11.288 13.485 17.624 hybrid contribution -0.537 1.281 -0.202 1.404 sum -1.707 -10.007 13.282 16.717 Atomic orbital electron populations 1.23005 0.80802 1.03142 1.00339 1.88019 1.19527 1.25104 1.94553 1.21306 0.94516 0.86701 0.92918 0.89177 1.19975 0.83876 0.82415 0.81914 1.90697 1.65152 1.32272 1.52154 1.48620 1.28736 1.06065 1.51414 1.22699 0.86229 0.98264 0.94348 1.22247 1.00133 0.92237 0.95551 0.88359 1.21946 0.96803 1.01522 0.96806 1.20506 1.01460 0.83406 0.88117 1.42833 1.73963 1.12402 1.03783 1.19334 1.34845 0.92181 0.92283 0.91098 1.25057 1.00531 0.97962 0.95909 1.70333 1.54552 1.32452 0.98517 0.86211 0.77901 0.84826 0.77386 1.21435 1.21752 1.20672 1.19240 0.96166 0.91801 0.87526 1.21467 0.97473 0.95430 0.97298 0.90822 1.22281 0.99569 0.81337 0.98420 1.22673 1.02740 1.04410 0.89687 1.22928 1.01920 0.94815 0.99973 1.23064 0.95694 1.01801 1.00655 0.89158 0.93653 0.93618 0.90374 0.91855 0.92480 0.93818 0.93911 0.91270 0.94000 0.97108 0.96122 0.90861 0.91371 0.86482 0.87527 0.88824 0.88362 0.88764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.69 101.05 1.08 1.30 16 2 O -0.35 -4.75 8.24 -55.03 -0.45 -5.21 16 3 C 0.11 1.38 2.35 -27.88 -0.07 1.31 16 4 H 0.09 1.06 7.59 -51.93 -0.39 0.67 16 5 C 0.53 8.55 7.17 -10.99 -0.08 8.47 16 6 O -0.53 -10.50 16.75 -14.24 -0.24 -10.74 16 7 N -0.61 -9.10 2.81 -169.56 -0.48 -9.58 16 8 C 0.11 1.57 6.25 -1.76 -0.01 1.56 16 9 C -0.08 -1.32 3.72 -88.48 -0.33 -1.65 16 10 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 11 C -0.13 -2.52 5.03 -27.29 -0.14 -2.66 16 12 C 0.19 4.51 4.59 -5.70 -0.03 4.48 16 13 N -0.60 -14.46 3.25 -179.32 -0.58 -15.04 16 14 C -0.26 -6.83 9.50 -15.06 -0.14 -6.97 16 15 H 0.07 1.83 7.82 -52.48 -0.41 1.42 16 16 C 0.00 0.05 5.41 -17.43 -0.09 -0.04 16 17 N -0.91 -25.60 9.14 55.49 0.51 -25.10 16 18 Si 0.91 21.35 29.56 -169.99 -5.02 16.33 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 C 0.18 3.45 5.67 -6.88 -0.04 3.41 16 23 C -0.10 -1.49 2.69 -91.23 -0.25 -1.74 16 24 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 25 C 0.11 1.46 4.85 -3.14 -0.02 1.44 16 26 C -0.18 -1.88 5.17 -90.62 -0.47 -2.35 16 27 C -0.16 -1.55 9.87 -26.70 -0.26 -1.81 16 28 C -0.18 -1.49 10.12 -26.69 -0.27 -1.76 16 29 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.04 0.35 6.04 -51.93 -0.31 0.03 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 1.24 7.86 -51.93 -0.41 0.83 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.04 0.85 6.88 -51.93 -0.36 0.49 16 36 H 0.04 1.16 7.22 -51.93 -0.38 0.78 16 37 H 0.07 1.86 6.31 -51.93 -0.33 1.53 16 38 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 39 H 0.01 0.21 7.78 -51.93 -0.40 -0.19 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 1.10 7.88 -51.93 -0.41 0.69 16 42 H 0.07 0.77 6.30 -51.93 -0.33 0.44 16 43 H 0.12 1.23 6.40 -51.93 -0.33 0.90 16 44 H 0.11 1.13 7.04 -51.93 -0.37 0.76 16 45 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.09 0.74 6.09 -51.93 -0.32 0.43 16 LS Contribution 356.95 15.07 5.38 5.38 Total: -1.00 -31.33 356.95 -9.68 -41.01 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -7.68 Total: -0.05 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -1.11 Total: 3.00 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: -0.55 Total: -49.71 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.69 Total: -15.95 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.33 -9.68 -41.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087951933.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.841 kcal (2) G-P(sol) polarization free energy of solvation -31.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds