Wall clock time and date at job start Fri Apr 10 2020 17:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99728 * 2 1 4 4 H 1.08997 * 109.47021 * 341.81922 * 3 2 1 5 5 C 1.50700 * 109.46800 * 221.81857 * 3 2 1 6 6 O 1.21285 * 120.00334 * 352.44495 * 5 3 2 7 7 N 1.34775 * 119.99805 * 172.44168 * 5 3 2 8 8 C 1.47758 * 125.81927 * 175.12300 * 7 5 3 9 9 C 1.55972 * 104.12200 * 154.10427 * 8 7 5 10 10 H 1.09003 * 113.25516 * 160.74398 * 9 8 7 11 11 C 1.52894 * 106.48238 * 285.38888 * 9 8 7 12 12 C 1.52018 * 111.32202 * 167.46602 * 11 9 8 13 13 N 1.44321 * 113.65511 * 322.32184 * 12 11 9 14 14 C 1.36933 * 116.35347 * 186.60643 * 13 12 11 15 15 H 1.08008 * 119.99719 * 162.67826 * 14 13 12 16 16 C 1.38809 * 120.00428 * 342.67306 * 14 13 12 17 17 N 1.31627 * 119.99567 * 7.00556 * 16 14 13 18 18 Si 1.86794 * 119.99989 * 187.00326 * 16 14 13 19 19 H 1.48499 * 109.47043 * 90.00376 * 18 16 14 20 20 H 1.48512 * 109.47016 * 209.99963 * 18 16 14 21 21 H 1.48493 * 109.47718 * 329.99870 * 18 16 14 22 22 C 1.43999 * 127.28907 * 6.62321 * 13 12 11 23 23 C 1.49959 * 116.09649 * 2.50695 * 22 13 12 24 24 H 1.08993 * 108.42988 * 141.33073 * 23 22 13 25 25 C 1.47614 * 125.82023 * 355.11767 * 7 5 3 26 26 C 1.52997 * 109.47045 * 101.81979 * 3 2 1 27 27 C 1.52995 * 117.50202 * 6.16558 * 26 3 2 28 28 C 1.52997 * 117.49974 * 297.50232 * 26 3 2 29 29 H 1.09002 * 109.46457 * 184.65392 * 1 2 3 30 30 H 1.09004 * 109.47350 * 304.64974 * 1 2 3 31 31 H 1.08996 * 109.47153 * 64.65817 * 1 2 3 32 32 H 1.09002 * 110.50434 * 35.44838 * 8 7 5 33 33 H 1.09003 * 110.50240 * 272.76511 * 8 7 5 34 34 H 1.08998 * 109.06220 * 288.91726 * 11 9 8 35 35 H 1.08998 * 109.05976 * 47.85210 * 11 9 8 36 36 H 1.09000 * 108.96873 * 200.86725 * 12 11 9 37 37 H 1.09004 * 107.88700 * 82.99912 * 12 11 9 38 38 H 0.97001 * 119.99565 * 179.97438 * 17 16 14 39 39 H 1.09001 * 108.15952 * 240.78406 * 22 13 12 40 40 H 1.09003 * 107.99628 * 124.09959 * 22 13 12 41 41 H 1.09001 * 110.08395 * 299.86222 * 25 7 5 42 42 H 1.09000 * 110.08053 * 61.42222 * 25 7 5 43 43 H 1.09005 * 115.54805 * 151.83657 * 26 3 2 44 44 H 1.09002 * 117.49744 * 359.97438 * 27 26 3 45 45 H 1.08997 * 117.49901 * 145.02274 * 27 26 3 46 46 H 1.09005 * 117.49968 * 214.98215 * 28 26 3 47 47 H 1.08999 * 117.49837 * 359.97438 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2660 2.0345 -0.3206 5 6 3.1818 1.3337 -0.9474 6 8 3.5745 0.3056 -1.4571 7 7 3.7933 2.5015 -1.2283 8 6 5.0082 2.6649 -2.0532 9 6 4.8997 4.1191 -2.6067 10 1 5.8518 4.5190 -2.9555 11 6 3.8313 4.0885 -3.7000 12 6 3.4146 5.4932 -4.1050 13 7 3.3510 6.4196 -3.0002 14 6 2.8476 7.6625 -3.2774 15 1 2.5114 8.3006 -2.4733 16 6 2.7694 8.1025 -4.5915 17 7 3.0481 7.2783 -5.5792 18 14 2.2685 9.8643 -4.9583 19 1 3.4787 10.7236 -5.0041 20 1 1.5731 9.9185 -6.2694 21 1 1.3555 10.3514 -3.8934 22 6 3.7578 6.1835 -1.6392 23 6 4.3624 4.8410 -1.3549 24 1 5.1823 4.9747 -0.6493 25 6 3.3634 3.8353 -0.7644 26 6 2.4875 1.6513 1.4119 27 6 2.4051 0.5533 2.4742 28 6 1.4303 1.7329 2.5149 29 1 -0.3632 -1.0243 0.0834 30 1 -0.3634 0.5843 0.8454 31 1 -0.3633 0.4398 -0.9287 32 1 5.0140 1.9446 -2.8713 33 1 5.9032 2.5554 -1.4406 34 1 4.2225 3.5532 -4.5651 35 1 2.9531 3.5630 -3.3249 36 1 2.4355 5.4486 -4.5820 37 1 4.1403 5.8617 -4.8301 38 1 2.9931 7.5857 -6.4975 39 1 2.8851 6.3057 -0.9977 40 1 4.4858 6.9481 -1.3679 41 1 2.3577 4.0509 -1.1252 42 1 3.3881 3.8787 0.3245 43 1 3.3276 2.3436 1.4678 44 1 2.0103 -0.4153 2.1673 45 1 3.1907 0.5235 3.2292 46 1 1.5751 2.4786 3.2966 47 1 0.3947 1.5407 2.2345 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087951933.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:37 Heat of formation + Delta-G solvation = -23.092943 kcal Electronic energy + Delta-G solvation = -27086.254854 eV Core-core repulsion = 23463.822500 eV Total energy + Delta-G solvation = -3622.432354 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.79325 -40.34279 -38.89988 -37.34256 -36.74706 -34.23567 -33.18512 -31.95709 -30.42306 -28.95230 -27.21423 -26.88910 -25.23911 -23.55114 -23.19869 -23.01911 -21.96206 -20.61914 -19.40757 -18.92019 -18.35816 -17.74322 -17.34719 -16.98716 -16.83947 -16.33967 -15.85529 -15.55417 -15.48422 -15.18690 -14.89644 -14.55303 -14.48428 -14.14834 -13.95691 -13.75915 -13.62522 -13.29463 -13.13007 -12.91190 -12.73934 -12.43662 -12.33416 -12.32062 -12.14046 -11.93903 -11.79601 -11.67098 -11.50234 -11.27346 -11.22035 -11.16569 -10.90895 -10.40980 -10.37580 -9.69594 -8.73580 -7.65373 -5.20816 1.46202 1.48637 1.49860 1.58170 1.67264 2.52087 2.70355 3.00408 3.28651 3.30718 3.50950 3.62600 3.71690 3.78412 3.84156 3.91443 4.08221 4.18309 4.21010 4.31783 4.34265 4.44081 4.50008 4.51623 4.57462 4.67771 4.68572 4.74399 4.84653 4.87720 4.93266 5.00519 5.01418 5.08010 5.10966 5.20124 5.22973 5.31316 5.32727 5.38917 5.62789 5.82624 5.98750 6.10537 6.42638 6.46426 7.05019 7.27392 8.13310 8.29136 9.20736 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.020594 B = 0.003589 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.318807 B = 7800.465636 C = 8096.501096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.381 6.381 3 C 0.111 3.889 4 H 0.099 0.901 5 C 0.525 3.475 6 O -0.575 6.575 7 N -0.611 5.611 8 C 0.112 3.888 9 C -0.079 4.079 10 H 0.105 0.895 11 C -0.120 4.120 12 C 0.208 3.792 13 N -0.616 5.616 14 C -0.268 4.268 15 H 0.077 0.923 16 C -0.054 4.054 17 N -0.938 5.938 18 Si 0.969 3.031 19 H -0.285 1.285 20 H -0.299 1.299 21 H -0.269 1.269 22 C 0.174 3.826 23 C -0.093 4.093 24 H 0.109 0.891 25 C 0.113 3.887 26 C -0.189 4.189 27 C -0.165 4.165 28 C -0.154 4.154 29 H 0.103 0.897 30 H 0.066 0.934 31 H 0.042 0.958 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.058 0.942 35 H 0.038 0.962 36 H -0.003 1.003 37 H 0.034 0.966 38 H 0.241 0.759 39 H 0.021 0.979 40 H 0.022 0.978 41 H 0.060 0.940 42 H 0.104 0.896 43 H 0.123 0.877 44 H 0.094 0.906 45 H 0.104 0.896 46 H 0.116 0.884 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.416 -9.998 16.886 19.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.299 6.299 3 C 0.050 3.950 4 H 0.117 0.883 5 C 0.313 3.687 6 O -0.454 6.454 7 N -0.345 5.345 8 C -0.010 4.010 9 C -0.098 4.098 10 H 0.123 0.877 11 C -0.159 4.159 12 C 0.083 3.917 13 N -0.343 5.343 14 C -0.398 4.398 15 H 0.095 0.905 16 C -0.247 4.247 17 N -0.587 5.587 18 Si 0.797 3.203 19 H -0.212 1.212 20 H -0.225 1.225 21 H -0.193 1.193 22 C 0.049 3.951 23 C -0.112 4.112 24 H 0.127 0.873 25 C -0.009 4.009 26 C -0.208 4.208 27 C -0.202 4.202 28 C -0.191 4.191 29 H 0.122 0.878 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.076 0.924 35 H 0.057 0.943 36 H 0.015 0.985 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.038 0.962 40 H 0.040 0.960 41 H 0.078 0.922 42 H 0.122 0.878 43 H 0.140 0.860 44 H 0.112 0.888 45 H 0.123 0.877 46 H 0.135 0.865 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.154 -10.833 16.517 19.786 hybrid contribution -0.586 1.140 -1.135 1.712 sum -1.740 -9.693 15.382 18.264 Atomic orbital electron populations 1.23203 0.79025 1.04509 1.01052 1.87990 1.21542 1.25628 1.94697 1.21317 0.93346 0.86847 0.93513 0.88317 1.20669 0.84350 0.81857 0.81777 1.90668 1.66753 1.33879 1.54104 1.48675 1.28570 1.06336 1.50916 1.22645 0.87364 0.96514 0.94464 1.22185 0.99176 0.93692 0.94772 0.87731 1.21729 0.97814 0.98069 0.98246 1.19973 0.97971 0.85927 0.87818 1.43070 1.73982 1.11683 1.05538 1.19725 1.34362 0.93228 0.92463 0.90510 1.25811 1.01462 1.01424 0.96017 1.70609 1.55974 1.33775 0.98336 0.85232 0.77577 0.80542 0.76903 1.21222 1.22542 1.19345 1.19426 0.96617 0.94242 0.84841 1.21436 0.98646 0.93589 0.97566 0.87258 1.22297 0.98223 0.80021 1.00335 1.22635 1.04137 1.05367 0.88656 1.22959 1.02894 0.94504 0.99847 1.23161 0.95420 1.01065 0.99435 0.87825 0.91574 0.93976 0.91854 0.89203 0.92352 0.94341 0.98452 0.94761 0.94865 0.96156 0.95978 0.92208 0.87765 0.85961 0.88787 0.87747 0.86530 0.88123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.69 113.37 1.21 1.52 16 2 O -0.38 -9.85 8.24 -130.05 -1.07 -10.92 16 3 C 0.11 2.68 2.35 29.85 0.07 2.75 16 4 H 0.10 2.14 7.59 -2.39 -0.02 2.13 16 5 C 0.52 16.38 7.17 87.66 0.63 17.00 16 6 O -0.57 -22.99 16.75 15.88 0.27 -22.73 16 7 N -0.61 -16.96 2.81 -808.75 -2.27 -19.24 16 8 C 0.11 3.10 6.25 87.17 0.55 3.64 16 9 C -0.08 -2.41 3.72 -9.41 -0.04 -2.44 16 10 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 11 C -0.12 -4.63 5.03 30.24 0.15 -4.48 16 12 C 0.21 10.25 4.59 86.46 0.40 10.65 16 13 N -0.62 -29.61 3.25 -721.26 -2.34 -31.96 16 14 C -0.27 -14.28 9.50 84.03 0.80 -13.48 16 15 H 0.08 3.91 7.82 -2.91 -0.02 3.89 16 16 C -0.05 -2.96 5.41 84.86 0.46 -2.50 16 17 N -0.94 -54.75 9.14 21.65 0.20 -54.55 16 18 Si 0.97 44.35 29.56 68.60 2.03 46.38 16 19 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 20 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 22 C 0.17 6.36 5.67 85.87 0.49 6.84 16 23 C -0.09 -2.58 2.69 -11.19 -0.03 -2.61 16 24 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 25 C 0.11 2.76 4.85 86.36 0.42 3.18 16 26 C -0.19 -3.50 5.17 -10.80 -0.06 -3.56 16 27 C -0.17 -2.79 9.87 30.62 0.30 -2.49 16 28 C -0.15 -2.07 10.12 30.62 0.31 -1.76 16 29 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.07 0.86 6.04 -2.39 -0.01 0.84 16 31 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 1.96 7.86 -2.39 -0.02 1.94 16 33 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.06 2.19 8.14 -2.39 -0.02 2.18 16 35 H 0.04 1.50 6.88 -2.39 -0.02 1.49 16 36 H 0.00 -0.16 7.22 -2.39 -0.02 -0.18 16 37 H 0.03 1.93 6.31 -2.38 -0.02 1.92 16 38 H 0.24 13.80 8.31 -92.71 -0.77 13.03 16 39 H 0.02 0.73 7.78 -2.39 -0.02 0.71 16 40 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.06 1.66 7.88 -2.39 -0.02 1.64 16 42 H 0.10 1.86 6.30 -2.39 -0.02 1.85 16 43 H 0.12 2.11 6.40 -2.38 -0.02 2.09 16 44 H 0.09 1.85 7.04 -2.39 -0.02 1.83 16 45 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.12 1.18 8.14 -2.38 -0.02 1.16 16 47 H 0.10 1.22 6.09 -2.39 -0.01 1.21 16 Total: -1.00 -70.77 356.95 3.41 -67.36 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 0.95 Total: 13.39 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: 5.66 Total: 12.28 kcal Atomic # 7 Polarization: -101.33 SS G_CDS: -4.42 Total: -105.75 kcal Atomic # 8 Polarization: -32.84 SS G_CDS: -0.81 Total: -33.65 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -70.77 3.41 -67.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087951933.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.264 kcal (2) G-P(sol) polarization free energy of solvation -70.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds