Wall clock time and date at job start Fri Apr 10 2020 17:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00345 * 2 1 4 4 H 1.48502 * 109.47058 * 274.71150 * 3 2 1 5 5 H 1.48500 * 109.47112 * 34.70754 * 3 2 1 6 6 H 1.48496 * 109.47027 * 154.71134 * 3 2 1 7 7 C 1.38814 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00081 * 330.02196 * 7 2 1 9 9 N 1.36937 * 120.00287 * 150.01940 * 7 2 1 10 10 C 1.44348 * 116.42452 * 330.61379 * 9 7 2 11 11 C 1.50238 * 113.05546 * 187.66293 * 10 9 7 12 12 C 1.52907 * 112.40930 * 320.73002 * 11 10 9 13 13 H 1.09004 * 113.03517 * 293.61549 * 12 11 10 14 14 C 1.55412 * 106.57020 * 169.20367 * 12 11 10 15 15 N 1.47384 * 106.73714 * 270.99639 * 14 12 11 16 16 C 1.34780 * 125.74179 * 179.05878 * 15 14 12 17 17 O 1.21280 * 119.99749 * 359.73036 * 16 15 14 18 18 C 1.50696 * 120.00114 * 180.02562 * 16 15 14 19 19 C 1.52994 * 109.46924 * 180.02562 * 18 16 15 20 20 O 1.42902 * 112.85316 * 53.80526 * 19 18 16 21 21 C 1.53782 * 113.61489 * 282.49516 * 19 18 16 22 22 C 1.53782 * 87.08197 * 220.02155 * 21 19 18 23 23 C 1.53782 * 87.08143 * 25.43300 * 22 21 19 24 24 C 1.47929 * 108.51818 * 359.32343 * 15 14 12 25 25 C 1.54101 * 109.62693 * 60.17420 * 12 11 10 26 26 H 1.08991 * 109.19012 * 188.18048 * 25 12 11 27 27 C 1.43980 * 116.42873 * 150.62841 * 9 7 2 28 28 H 0.97001 * 120.00033 * 0.02562 * 1 2 3 29 29 H 1.09006 * 108.76898 * 308.97504 * 10 9 7 30 30 H 1.09002 * 108.77666 * 67.26026 * 10 9 7 31 31 H 1.08995 * 109.19896 * 199.58055 * 11 10 9 32 32 H 1.09007 * 108.12637 * 81.14752 * 11 10 9 33 33 H 1.08996 * 110.00594 * 151.67833 * 14 12 11 34 34 H 1.08997 * 110.00579 * 30.31352 * 14 12 11 35 35 H 1.08999 * 109.46929 * 300.00078 * 18 16 15 36 36 H 1.08997 * 109.47466 * 59.99928 * 18 16 15 37 37 H 0.96697 * 113.99518 * 309.66382 * 20 19 18 38 38 H 1.09006 * 113.61346 * 334.56774 * 21 19 18 39 39 H 1.09002 * 113.61681 * 105.47070 * 21 19 18 40 40 H 1.09000 * 113.61483 * 270.88253 * 22 21 19 41 41 H 1.09002 * 113.61163 * 139.97861 * 22 21 19 42 42 H 1.09002 * 113.61112 * 220.01800 * 23 22 21 43 43 H 1.09001 * 113.69215 * 89.12980 * 23 22 21 44 44 H 1.09009 * 110.56585 * 93.88326 * 24 15 14 45 45 H 1.08999 * 110.56820 * 216.73722 * 24 15 14 46 46 H 1.09003 * 108.11237 * 61.04890 * 27 9 7 47 47 H 1.09005 * 108.11269 * 304.60691 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3982 2.1038 -1.3954 5 1 1.5010 2.6219 0.7972 6 1 3.5940 1.4133 0.5981 7 6 2.0102 -1.2022 0.0005 8 1 1.5785 -2.0747 0.4683 9 7 3.2421 -1.2819 -0.5920 10 6 3.4804 -0.3895 -1.7013 11 6 4.7772 -0.6633 -2.4087 12 6 5.9054 -1.0203 -1.4403 13 1 6.1912 -0.1904 -0.7939 14 6 7.0854 -1.5412 -2.3072 15 7 6.8900 -2.9939 -2.4612 16 6 7.6868 -3.8257 -3.1610 17 8 8.6610 -3.3900 -3.7373 18 6 7.3635 -5.2958 -3.2330 19 6 8.4179 -6.0088 -4.0820 20 8 9.7518 -5.7621 -3.6326 21 6 8.2286 -5.8089 -5.5950 22 6 8.6142 -7.2886 -5.7590 23 6 8.1134 -7.4972 -4.3201 24 6 5.6686 -3.3844 -1.7235 25 6 5.5260 -2.2861 -0.6476 26 1 6.2631 -2.4512 0.1380 27 6 4.1574 -2.2468 -0.0404 28 1 -0.4850 0.8401 -0.0004 29 1 2.6596 -0.4864 -2.4120 30 1 3.5021 0.6348 -1.3291 31 1 5.0659 0.2178 -2.9817 32 1 4.6202 -1.4961 -3.0943 33 1 8.0325 -1.3434 -1.8054 34 1 7.0723 -1.0577 -3.2840 35 1 7.3615 -5.7169 -2.2276 36 1 6.3809 -5.4301 -3.6851 37 1 9.9565 -4.8259 -3.5035 38 1 7.1996 -5.5915 -5.8813 39 1 8.9470 -5.1188 -6.0375 40 1 9.6857 -7.4502 -5.8762 41 1 8.0214 -7.8137 -6.5081 42 1 8.7388 -8.1702 -3.7334 43 1 7.0530 -7.7417 -4.2565 44 1 4.8045 -3.3877 -2.3881 45 1 5.7984 -4.3614 -1.2579 46 1 3.7112 -3.2358 -0.1456 47 1 4.2649 -2.0415 1.0247 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087960567.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:41 Heat of formation + Delta-G solvation = -28.983292 kcal Electronic energy + Delta-G solvation = -26739.522287 eV Core-core repulsion = 23116.834508 eV Total energy + Delta-G solvation = -3622.687779 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.88317 -39.81848 -38.21804 -35.96729 -34.58023 -32.91475 -31.86216 -31.25299 -30.27718 -28.07038 -25.96044 -25.85120 -24.05934 -22.93399 -22.63695 -21.69121 -19.82182 -19.44582 -18.31702 -17.34326 -17.10854 -16.51644 -16.14343 -15.78072 -15.50611 -15.21551 -14.96811 -14.62722 -14.20933 -14.14095 -13.70281 -13.41965 -13.23766 -12.99748 -12.84337 -12.64082 -12.50926 -12.30361 -12.13116 -11.76434 -11.63297 -11.54531 -11.41094 -11.07497 -11.02521 -10.80322 -10.65972 -10.47985 -10.28127 -10.04302 -9.95485 -9.84065 -9.82248 -9.43963 -8.76744 -8.43320 -6.88184 -6.08773 -3.39588 2.42242 2.80485 3.30945 3.45741 3.50051 3.90900 4.13230 4.34355 4.45810 4.47355 4.50954 4.54891 4.63661 4.81869 4.89904 4.91952 5.08566 5.16491 5.19643 5.29490 5.32743 5.40509 5.44436 5.49073 5.52775 5.56800 5.65368 5.69551 5.74745 5.86749 5.87488 5.93456 6.02723 6.08319 6.13973 6.16471 6.18890 6.31263 6.49621 6.61603 6.74888 6.81762 7.32286 7.63667 8.00123 8.01273 8.30536 9.03431 9.71814 9.95032 11.06893 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.030317 B = 0.003168 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.341479 B = 8836.890031 C = 9179.014389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.039 3.961 3 Si 0.878 3.122 4 H -0.287 1.287 5 H -0.304 1.304 6 H -0.276 1.276 7 C -0.285 4.285 8 H 0.081 0.919 9 N -0.599 5.599 10 C 0.156 3.844 11 C -0.123 4.123 12 C -0.087 4.087 13 H 0.099 0.901 14 C 0.110 3.890 15 N -0.614 5.614 16 C 0.532 3.468 17 O -0.552 6.552 18 C -0.160 4.160 19 C 0.129 3.871 20 O -0.550 6.550 21 C -0.161 4.161 22 C -0.135 4.135 23 C -0.128 4.128 24 C 0.103 3.897 25 C -0.101 4.101 26 H 0.080 0.920 27 C 0.174 3.826 28 H 0.264 0.736 29 H 0.046 0.954 30 H 0.009 0.991 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.389 0.611 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.026 0.974 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.256 -10.705 -7.501 20.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.163 4.163 3 Si 0.709 3.291 4 H -0.215 1.215 5 H -0.233 1.233 6 H -0.202 1.202 7 C -0.413 4.413 8 H 0.099 0.901 9 N -0.325 5.325 10 C 0.031 3.969 11 C -0.161 4.161 12 C -0.106 4.106 13 H 0.117 0.883 14 C -0.013 4.013 15 N -0.347 5.347 16 C 0.322 3.678 17 O -0.432 6.432 18 C -0.200 4.200 19 C 0.087 3.913 20 O -0.362 6.362 21 C -0.199 4.199 22 C -0.172 4.172 23 C -0.165 4.165 24 C -0.019 4.019 25 C -0.120 4.120 26 H 0.098 0.902 27 C 0.048 3.952 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.026 0.974 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.244 0.756 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.112 0.888 44 H 0.098 0.902 45 H 0.097 0.903 46 H 0.043 0.957 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 15.754 -11.092 -7.895 20.822 hybrid contribution 0.199 1.782 0.191 1.803 sum 15.953 -9.310 -7.704 20.013 Atomic orbital electron populations 1.69978 1.06135 1.26909 1.49977 1.25259 0.94931 0.97662 0.98416 0.86968 0.80305 0.84819 0.76988 1.21478 1.23256 1.20178 1.18791 0.91505 0.95816 1.35178 0.90095 1.42892 1.13640 1.42973 1.32986 1.19930 0.94481 0.92842 0.89650 1.21362 0.95320 1.01494 0.97906 1.22110 0.94049 0.97925 0.96477 0.88302 1.22386 0.98669 0.79959 1.00253 1.48774 1.26643 1.08878 1.50362 1.20314 0.82084 0.87936 0.77491 1.90538 1.28603 1.77909 1.46197 1.22343 1.01892 0.92005 1.03744 1.21804 0.82398 0.95210 0.91923 1.86322 1.27755 1.33400 1.88695 1.23572 1.02170 0.97375 0.96792 1.22743 1.01542 0.96497 0.96458 1.23065 1.01757 0.94414 0.97303 1.22663 0.86692 0.98701 0.93829 1.21711 0.99520 0.94073 0.96711 0.90181 1.19327 0.86777 0.93513 0.95590 0.92654 0.93556 0.97404 0.91737 0.91989 0.91551 0.91145 0.88045 0.87668 0.75611 0.89806 0.90648 0.89882 0.91381 0.90495 0.88788 0.90152 0.90346 0.95655 0.95042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.42 13.97 55.49 0.78 -25.65 16 2 C 0.04 1.08 5.16 -17.43 -0.09 0.99 16 3 Si 0.88 21.84 24.81 -169.99 -4.22 17.62 16 4 H -0.29 -6.94 6.86 56.52 0.39 -6.55 16 5 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.28 -7.65 9.63 -15.06 -0.15 -7.79 16 8 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 9 N -0.60 -13.37 2.96 -180.49 -0.53 -13.90 16 10 C 0.16 3.24 4.77 -6.56 -0.03 3.21 16 11 C -0.12 -1.94 4.68 -28.15 -0.13 -2.07 16 12 C -0.09 -1.21 3.67 -88.81 -0.33 -1.54 16 13 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 14 C 0.11 1.38 6.24 -2.28 -0.01 1.37 16 15 N -0.61 -7.52 3.34 -169.44 -0.57 -8.08 16 16 C 0.53 6.60 7.61 -10.99 -0.08 6.52 16 17 O -0.55 -8.17 13.93 -14.20 -0.20 -8.36 16 18 C -0.16 -1.54 4.36 -27.89 -0.12 -1.67 16 19 C 0.13 1.35 1.10 -89.81 -0.10 1.25 16 20 O -0.55 -7.00 13.39 -54.99 -0.74 -7.74 16 21 C -0.16 -1.62 7.16 -25.92 -0.19 -1.81 16 22 C -0.14 -1.18 8.02 -25.92 -0.21 -1.38 16 23 C -0.13 -1.10 7.47 -25.92 -0.19 -1.29 16 24 C 0.10 1.22 5.42 -2.52 -0.01 1.21 16 25 C -0.10 -1.39 2.88 -90.90 -0.26 -1.65 16 26 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 27 C 0.17 3.12 5.73 -6.98 -0.04 3.08 16 28 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.05 1.04 8.12 -51.93 -0.42 0.62 16 30 H 0.01 0.20 3.06 -51.93 -0.16 0.04 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.94 6.60 -51.93 -0.34 0.60 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.91 7.79 -51.93 -0.40 0.50 16 35 H 0.10 0.87 7.87 -51.93 -0.41 0.46 16 36 H 0.11 0.86 8.05 -51.93 -0.42 0.44 16 37 H 0.39 5.02 6.21 45.56 0.28 5.30 16 38 H 0.08 0.77 8.04 -51.93 -0.42 0.35 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.09 0.63 8.10 -51.93 -0.42 0.21 16 44 H 0.08 1.02 7.15 -51.92 -0.37 0.65 16 45 H 0.08 0.76 7.51 -51.93 -0.39 0.37 16 46 H 0.03 0.45 7.79 -51.93 -0.40 0.05 16 47 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 353.32 15.07 5.32 5.32 Total: -1.00 -30.97 353.32 -9.35 -40.32 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -7.25 Total: 2.06 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -1.94 Total: -1.58 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: -0.33 Total: -47.63 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.93 Total: -16.10 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.22 Total: 17.62 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.97 -9.35 -40.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087960567.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.335 kcal (2) G-P(sol) polarization free energy of solvation -30.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds