Wall clock time and date at job start Fri Apr 10 2020 17:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 119.99899 * 2 1 4 4 H 1.48499 * 109.46945 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47298 * 299.99922 * 3 2 1 6 6 H 1.48508 * 109.47046 * 60.00166 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00631 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99374 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00002 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.52161 * 324.87804 * 10 9 7 12 12 C 1.53804 * 109.52078 * 84.99941 * 10 9 7 13 13 C 1.52446 * 109.40170 * 197.80377 * 12 10 9 14 14 C 1.53956 * 110.72966 * 246.27419 * 13 12 10 15 15 C 1.52870 * 109.73162 * 44.36895 * 14 13 12 16 16 C 1.53447 * 109.38515 * 72.89393 * 15 14 13 17 17 N 1.45330 * 108.41485 * 282.27616 * 16 15 14 18 18 C 1.34773 * 120.36217 * 136.65768 * 17 16 15 19 19 O 1.21289 * 119.99885 * 184.96523 * 18 17 16 20 20 C 1.50697 * 120.00556 * 4.96508 * 18 17 16 21 21 C 1.53002 * 120.24654 * 268.82645 * 20 18 17 22 22 C 1.53008 * 60.65162 * 247.85734 * 21 20 18 23 23 H 1.08994 * 120.24729 * 112.14014 * 22 21 20 24 24 C 1.54476 * 118.06459 * 269.59376 * 22 21 20 25 25 O 1.44423 * 104.80892 * 38.87024 * 24 22 21 26 26 C 1.44428 * 105.27451 * 40.51007 * 25 24 22 27 27 C 1.46973 * 119.27169 * 316.93414 * 17 16 15 28 28 H 0.97009 * 119.99889 * 0.02562 * 1 2 3 29 29 H 0.97002 * 120.00573 * 0.02562 * 9 7 2 30 30 H 1.09004 * 109.47691 * 77.82810 * 12 10 9 31 31 H 1.08995 * 109.49657 * 317.79612 * 12 10 9 32 32 H 1.08999 * 109.22388 * 125.95479 * 13 12 10 33 33 H 1.08995 * 109.22610 * 6.59601 * 13 12 10 34 34 H 1.08996 * 109.42764 * 284.28298 * 14 13 12 35 35 H 1.08999 * 109.42402 * 164.44667 * 14 13 12 36 36 H 1.08997 * 109.48705 * 312.91831 * 15 14 13 37 37 H 1.09001 * 109.49899 * 192.87641 * 15 14 13 38 38 H 1.09007 * 109.67302 * 162.55037 * 16 15 14 39 39 H 1.09002 * 109.67827 * 42.01429 * 16 15 14 40 40 H 1.08991 * 117.43211 * 355.52963 * 21 20 18 41 41 H 1.09000 * 117.43178 * 140.18405 * 21 20 18 42 42 H 1.09002 * 110.37302 * 280.03886 * 24 22 21 43 43 H 1.09003 * 110.37077 * 157.70059 * 24 22 21 44 44 H 1.09001 * 110.37648 * 200.66292 * 26 25 24 45 45 H 1.08993 * 110.46470 * 78.37020 * 26 25 24 46 46 H 1.09000 * 109.52688 * 231.25148 * 27 17 16 47 47 H 1.08995 * 109.52460 * 351.47596 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9679 -3.5521 -0.5905 12 6 2.4245 -4.0387 1.4447 13 6 3.5350 -5.0829 1.4261 14 6 3.0266 -6.4289 1.9739 15 6 1.6528 -6.7416 1.3809 16 6 1.8126 -7.1399 -0.0923 17 7 2.0137 -5.9321 -0.8752 18 6 2.9507 -5.8959 -1.8432 19 8 3.1753 -4.8591 -2.4313 20 6 3.7194 -7.1434 -2.1951 21 6 5.0432 -7.4562 -1.4946 22 6 5.0478 -7.1018 -2.9831 23 1 5.4952 -6.1682 -3.3239 24 6 4.9143 -8.2529 -4.0046 25 8 3.9568 -9.1597 -3.4159 26 6 2.9405 -8.3147 -2.8338 27 6 1.1883 -4.7487 -0.5955 28 1 -0.4850 0.8401 -0.0004 29 1 0.3556 -2.3881 -0.0002 30 1 1.5477 -4.4492 1.9456 31 1 2.7671 -3.1529 1.9794 32 1 4.3648 -4.7353 2.0415 33 1 3.8815 -5.2201 0.4019 34 1 2.9486 -6.3722 3.0596 35 1 3.7271 -7.2186 1.7023 36 1 1.0166 -5.8595 1.4521 37 1 1.1971 -7.5640 1.9325 38 1 0.9133 -7.6528 -0.4335 39 1 2.6751 -7.7972 -0.2034 40 1 5.4320 -6.7116 -0.8001 41 1 5.2356 -8.4947 -1.2251 42 1 5.8739 -8.7513 -4.1423 43 1 4.5425 -7.8741 -4.9567 44 1 2.3838 -8.8603 -2.0719 45 1 2.2646 -7.9452 -3.6048 46 1 0.7444 -4.3866 -1.5229 47 1 0.3994 -5.0130 0.1086 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088316836.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:57 Heat of formation + Delta-G solvation = -43.820117 kcal Electronic energy + Delta-G solvation = -27587.193872 eV Core-core repulsion = 23963.862720 eV Total energy + Delta-G solvation = -3623.331152 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.22293 -40.66712 -38.65669 -36.70068 -35.44750 -35.09657 -33.93436 -31.29320 -30.30005 -28.90068 -27.30180 -26.83103 -25.90942 -24.57070 -22.84235 -22.33748 -21.66005 -20.75771 -19.78019 -19.12141 -18.44121 -17.30210 -17.17344 -16.80868 -16.67146 -16.26584 -16.15901 -15.60988 -15.32665 -15.22026 -15.04404 -14.78990 -14.45316 -14.02333 -13.86314 -13.69990 -13.59676 -13.18532 -13.00680 -12.92484 -12.79215 -12.50732 -12.47480 -12.28237 -12.16768 -11.96170 -11.80016 -11.65592 -11.59686 -11.42798 -11.25758 -11.17296 -10.97853 -10.65423 -10.59003 -9.54139 -9.01204 -7.98381 -5.26154 1.40930 1.42624 1.49244 1.52414 1.86436 2.34763 2.52987 2.82483 3.34060 3.38898 3.48748 3.57425 3.77999 3.86304 3.95516 4.03987 4.09995 4.14277 4.17063 4.18972 4.40805 4.45893 4.49602 4.57100 4.60004 4.64483 4.66045 4.69709 4.76667 4.80637 4.80940 4.89277 4.96187 5.06045 5.07393 5.17224 5.22424 5.38985 5.42823 5.44260 5.48682 5.59526 5.61937 5.71556 6.24886 6.46869 7.16994 7.30310 8.04716 8.29718 9.25082 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.017827 B = 0.004191 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.300894 B = 6679.937214 C = 7379.445862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.071 4.071 3 Si 0.968 3.032 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.234 4.234 8 H 0.060 0.940 9 N -0.733 5.733 10 C 0.164 3.836 11 H 0.028 0.972 12 C -0.129 4.129 13 C -0.113 4.113 14 C -0.106 4.106 15 C -0.148 4.148 16 C 0.101 3.899 17 N -0.586 5.586 18 C 0.550 3.450 19 O -0.582 6.582 20 C -0.216 4.216 21 C -0.087 4.087 22 C -0.176 4.176 23 H 0.114 0.886 24 C 0.075 3.925 25 O -0.374 6.374 26 C 0.094 3.906 27 C 0.125 3.875 28 H 0.252 0.748 29 H 0.373 0.627 30 H 0.074 0.926 31 H 0.027 0.973 32 H 0.048 0.952 33 H 0.043 0.957 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.133 0.867 42 H 0.123 0.877 43 H 0.071 0.929 44 H 0.126 0.874 45 H 0.062 0.938 46 H 0.041 0.959 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.457 -25.225 0.098 26.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.263 4.263 3 Si 0.797 3.203 4 H -0.198 1.198 5 H -0.219 1.219 6 H -0.213 1.213 7 C -0.366 4.366 8 H 0.078 0.922 9 N -0.373 5.373 10 C 0.055 3.945 11 H 0.046 0.954 12 C -0.169 4.169 13 C -0.151 4.151 14 C -0.143 4.143 15 C -0.186 4.186 16 C -0.021 4.021 17 N -0.318 5.318 18 C 0.339 3.661 19 O -0.461 6.461 20 C -0.220 4.220 21 C -0.124 4.124 22 C -0.195 4.195 23 H 0.132 0.868 24 C -0.002 4.002 25 O -0.292 6.292 26 C 0.017 3.983 27 C 0.001 3.999 28 H 0.061 0.939 29 H 0.205 0.795 30 H 0.092 0.908 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.123 0.877 38 H 0.105 0.895 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.151 0.849 42 H 0.141 0.859 43 H 0.090 0.910 44 H 0.143 0.857 45 H 0.080 0.920 46 H 0.060 0.940 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.705 -24.819 -0.227 25.988 hybrid contribution -0.138 2.288 -0.230 2.304 sum 7.567 -22.531 -0.457 23.772 Atomic orbital electron populations 1.69802 1.06297 1.25947 1.59665 1.25460 0.96425 1.00676 1.03788 0.85152 0.77962 0.80172 0.76981 1.19836 1.21904 1.21306 1.19464 0.90797 0.85459 1.40902 0.92162 1.42437 1.05335 1.00810 1.88767 1.20688 0.94427 0.85059 0.94345 0.95396 1.22317 0.99240 0.97526 0.97797 1.21629 0.97263 0.95987 1.00234 1.21698 0.96898 0.95478 1.00249 1.22323 0.98156 1.03168 0.94932 1.22026 1.03841 0.85463 0.90741 1.47685 1.35650 1.13941 1.34497 1.19652 0.79363 0.88177 0.78943 1.90763 1.66909 1.34181 1.54288 1.22996 0.91504 0.96982 1.10472 1.22992 0.91892 1.04656 0.92849 1.24272 0.98867 1.02068 0.94279 0.86802 1.23060 0.94429 0.88494 0.94178 1.89151 1.36218 1.29365 1.74472 1.22840 0.90061 0.88438 0.96922 1.21426 0.93483 0.85142 0.99838 0.93921 0.79468 0.90751 0.95364 0.93317 0.93811 0.91337 0.90048 0.91409 0.87745 0.89462 0.87710 0.87989 0.84894 0.85869 0.91036 0.85653 0.91966 0.94012 0.87654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.88 13.06 21.65 0.28 -60.60 16 2 C -0.07 -4.29 5.50 84.86 0.47 -3.83 16 3 Si 0.97 48.72 29.55 68.60 2.03 50.75 16 4 H -0.27 -13.27 7.11 99.48 0.71 -12.56 16 5 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 6 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 7 C -0.23 -14.03 9.88 84.03 0.83 -13.20 16 8 H 0.06 3.63 7.83 -2.91 -0.02 3.61 16 9 N -0.73 -39.51 5.13 -323.54 -1.66 -41.17 16 10 C 0.16 7.07 2.38 44.87 0.11 7.18 16 11 H 0.03 1.41 5.97 -2.39 -0.01 1.40 16 12 C -0.13 -4.68 5.09 30.68 0.16 -4.52 16 13 C -0.11 -3.16 5.40 30.73 0.17 -2.99 16 14 C -0.11 -1.93 5.75 30.87 0.18 -1.75 16 15 C -0.15 -2.44 5.45 30.70 0.17 -2.27 16 16 C 0.10 1.65 5.09 86.75 0.44 2.09 16 17 N -0.59 -15.77 1.70 -824.95 -1.40 -17.17 16 18 C 0.55 17.05 5.85 87.66 0.51 17.56 16 19 O -0.58 -25.14 15.47 -3.06 -0.05 -25.19 16 20 C -0.22 -4.63 1.25 -51.91 -0.07 -4.69 16 21 C -0.09 -1.47 9.42 30.60 0.29 -1.18 16 22 C -0.18 -3.55 6.99 -9.78 -0.07 -3.61 16 23 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 24 C 0.07 1.19 7.53 72.48 0.55 1.74 16 25 O -0.37 -6.67 11.31 -148.98 -1.69 -8.35 16 26 C 0.09 1.63 6.87 72.49 0.50 2.12 16 27 C 0.12 4.34 4.62 85.89 0.40 4.73 16 28 H 0.25 15.28 8.31 -92.70 -0.77 14.51 16 29 H 0.37 20.94 7.80 -92.71 -0.72 20.22 16 30 H 0.07 2.42 5.47 -2.38 -0.01 2.41 16 31 H 0.03 1.20 8.08 -2.39 -0.02 1.18 16 32 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.04 1.35 5.38 -2.39 -0.01 1.33 16 34 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.08 1.14 7.87 -2.39 -0.02 1.12 16 36 H 0.07 1.46 3.35 -2.39 -0.01 1.45 16 37 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 39 H 0.10 1.33 5.46 -2.39 -0.01 1.32 16 40 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.13 1.58 8.06 -2.39 -0.02 1.57 16 42 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.13 1.48 7.09 -2.39 -0.02 1.47 16 45 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.04 1.71 8.13 -2.39 -0.02 1.69 16 47 H 0.11 3.11 6.06 -2.39 -0.01 3.10 16 Total: -1.00 -77.36 352.77 2.40 -74.96 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: 0.26 Total: 29.39 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: 4.62 Total: -2.63 kcal Atomic # 7 Polarization: -116.16 SS G_CDS: -2.78 Total: -118.93 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -1.73 Total: -33.54 kcal Atomic # 14 Polarization: 48.72 SS G_CDS: 2.03 Total: 50.75 kcal Total: -77.36 2.40 -74.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088316836.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.136 kcal (2) G-P(sol) polarization free energy of solvation -77.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds