Wall clock time and date at job start Fri Apr 10 2020 18:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 110.00267 * 2 1 4 4 C 1.54326 * 109.88324 * 238.90272 * 2 1 3 5 5 H 1.09001 * 110.87299 * 336.82668 * 4 2 1 6 6 N 1.46507 * 110.71983 * 100.02707 * 4 2 1 7 7 C 1.34776 * 119.99770 * 199.97555 * 6 4 2 8 8 O 1.21273 * 120.00489 * 0.02562 * 7 6 4 9 9 C 1.50701 * 119.99495 * 179.97438 * 7 6 4 10 10 H 1.09002 * 110.43684 * 57.45570 * 9 7 6 11 11 C 1.54811 * 110.49081 * 294.76790 * 9 7 6 12 12 C 1.54993 * 102.09194 * 262.20865 * 11 9 7 13 13 O 1.44387 * 103.49152 * 322.97229 * 12 11 9 14 14 C 1.43743 * 106.97051 * 40.06308 * 13 12 11 15 15 H 1.09006 * 109.88008 * 92.91039 * 14 13 12 16 16 C 1.53004 * 109.87543 * 214.06226 * 14 13 12 17 17 C 1.52991 * 117.49976 * 6.57743 * 16 14 13 18 18 C 1.52999 * 117.49906 * 297.91689 * 16 14 13 19 19 C 1.55156 * 102.94294 * 218.38644 * 4 2 1 20 20 C 1.54911 * 101.57935 * 35.50626 * 19 4 2 21 21 N 1.47024 * 109.88586 * 121.09842 * 2 1 3 22 22 C 1.36939 * 125.64031 * 298.32207 * 21 2 1 23 23 H 1.07996 * 120.00850 * 349.86676 * 22 21 2 24 24 C 1.38819 * 119.99359 * 169.86741 * 22 21 2 25 25 N 1.31615 * 120.00462 * 350.47816 * 24 22 21 26 26 Si 1.86801 * 119.99768 * 170.47902 * 24 22 21 27 27 H 1.48503 * 109.47240 * 94.13534 * 26 24 22 28 28 H 1.48493 * 109.47426 * 214.13436 * 26 24 22 29 29 H 1.48504 * 109.47276 * 334.13700 * 26 24 22 30 30 H 1.08997 * 109.46888 * 181.09574 * 1 2 3 31 31 H 1.08996 * 109.47343 * 301.09660 * 1 2 3 32 32 H 1.08998 * 109.46866 * 61.09732 * 1 2 3 33 33 H 0.97000 * 119.99445 * 19.98001 * 6 4 2 34 34 H 1.09003 * 110.90509 * 20.40500 * 11 9 7 35 35 H 1.08999 * 110.90845 * 144.00476 * 11 9 7 36 36 H 1.09000 * 110.62135 * 81.47869 * 12 11 9 37 37 H 1.09001 * 110.62051 * 204.31921 * 12 11 9 38 38 H 1.09000 * 115.54562 * 152.25192 * 16 14 13 39 39 H 1.09006 * 117.49882 * 0.02562 * 17 16 14 40 40 H 1.09003 * 117.49491 * 145.01887 * 17 16 14 41 41 H 1.08997 * 117.50101 * 214.97877 * 18 16 14 42 42 H 1.09006 * 117.49669 * 359.97438 * 18 16 14 43 43 H 1.09005 * 111.00460 * 153.57501 * 19 4 2 44 44 H 1.08998 * 111.01227 * 277.39145 * 19 4 2 45 45 H 1.08999 * 110.36836 * 81.82746 * 20 19 4 46 46 H 1.09003 * 110.36239 * 204.14837 * 20 19 4 47 47 H 0.96998 * 120.00222 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7496 -1.2427 5 1 1.3064 -1.4459 -1.6211 6 7 2.4555 0.1960 -2.2876 7 6 2.5559 -0.2160 -3.5668 8 8 2.3142 -1.3694 -3.8532 9 6 2.9675 0.7568 -4.6416 10 1 3.9368 1.1964 -4.4062 11 6 1.8958 1.8609 -4.8125 12 6 1.0830 1.3395 -6.0249 13 8 2.0884 0.7461 -6.8744 14 6 3.0114 0.0574 -6.0141 15 1 2.7121 -0.9854 -5.9084 16 6 4.4245 0.1398 -6.5950 17 6 4.6313 1.0224 -7.8274 18 6 4.6643 -0.5019 -7.9631 19 6 3.2876 -1.5142 -0.6924 20 6 2.8145 -1.8794 0.7368 21 7 2.0300 -0.7141 1.1839 22 6 1.8050 -0.3556 2.4862 23 1 1.3586 0.6012 2.7136 24 6 2.1506 -1.2220 3.5142 25 7 2.5180 -2.4557 3.2396 26 14 2.0944 -0.6370 5.2873 27 1 0.7810 -0.9901 5.8837 28 1 3.1806 -1.2920 6.0594 29 1 2.2767 0.8362 5.3286 30 1 -0.3633 -1.0275 0.0197 31 1 -0.3634 0.5307 0.8799 32 1 -0.3633 0.4967 -0.8997 33 1 2.6485 1.1186 -2.0585 34 1 1.2672 1.9334 -3.9250 35 1 2.3592 2.8211 -5.0388 36 1 0.3578 0.5903 -5.7073 37 1 0.5836 2.1632 -6.5350 38 1 5.2351 0.0926 -5.8679 39 1 3.7607 1.5449 -8.2241 40 1 5.5783 1.5557 -7.9112 41 1 5.6330 -0.9708 -8.1362 42 1 3.8155 -0.9830 -8.4491 43 1 3.4852 -2.4111 -1.2796 44 1 4.1656 -0.8691 -0.6610 45 1 2.1886 -2.7715 0.7128 46 1 3.6716 -2.0338 1.3922 47 1 2.7599 -3.0610 3.9579 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088760457.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:07 Heat of formation + Delta-G solvation = -33.840815 kcal Electronic energy + Delta-G solvation = -26359.048074 eV Core-core repulsion = 22736.149657 eV Total energy + Delta-G solvation = -3622.898417 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.75366 -38.99540 -37.47265 -36.52547 -34.12065 -32.74338 -31.76477 -30.41849 -29.42761 -28.63197 -25.31563 -24.03857 -23.73051 -22.68097 -22.43410 -20.71920 -20.33958 -20.16259 -19.52605 -17.28040 -16.84871 -16.62009 -16.20585 -15.62189 -15.32245 -14.95664 -14.66701 -14.51517 -14.03309 -13.91347 -13.68842 -13.50419 -12.83251 -12.62865 -12.23835 -12.14174 -11.99809 -11.74223 -11.62736 -11.59950 -11.48688 -11.34153 -11.14764 -10.96049 -10.79632 -10.60575 -10.45233 -10.42404 -10.31352 -10.09185 -9.91603 -9.83595 -9.67849 -9.47595 -8.73926 -8.60142 -6.87766 -5.78238 -3.12070 2.66480 3.18195 3.36679 3.42632 3.44403 3.59454 3.66906 4.25235 4.38902 4.45643 4.60866 4.67838 4.80384 4.84732 5.02488 5.09030 5.18232 5.26136 5.33078 5.39437 5.45522 5.48120 5.53758 5.56082 5.58848 5.68457 5.76829 5.78425 5.87531 5.98589 6.08124 6.08549 6.19628 6.27031 6.30530 6.47635 6.57209 6.65285 6.69365 6.84893 7.07328 7.46334 7.54839 7.65133 7.74649 8.20801 8.32052 9.14346 9.76431 10.42965 11.34387 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.030511 B = 0.002905 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.469985 B = 9635.070720 C =10053.930765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.156 3.844 3 H 0.035 0.965 4 C 0.136 3.864 5 H 0.092 0.908 6 N -0.713 5.713 7 C 0.519 3.481 8 O -0.537 6.537 9 C -0.140 4.140 10 H 0.112 0.888 11 C -0.145 4.145 12 C 0.048 3.952 13 O -0.370 6.370 14 C 0.116 3.884 15 H 0.100 0.900 16 C -0.160 4.160 17 C -0.167 4.167 18 C -0.174 4.174 19 C -0.154 4.154 20 C 0.174 3.826 21 N -0.594 5.594 22 C -0.228 4.228 23 H 0.076 0.924 24 C -0.005 4.005 25 N -0.916 5.916 26 Si 0.910 3.090 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.281 1.281 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.036 0.964 33 H 0.398 0.602 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.063 0.937 37 H 0.095 0.905 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.029 0.971 46 H 0.071 0.929 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.830 9.243 -19.216 21.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.048 3.952 3 H 0.053 0.947 4 C 0.031 3.969 5 H 0.110 0.890 6 N -0.363 5.363 7 C 0.304 3.696 8 O -0.414 6.414 9 C -0.162 4.162 10 H 0.130 0.870 11 C -0.183 4.183 12 C -0.029 4.029 13 O -0.289 6.289 14 C 0.058 3.942 15 H 0.117 0.883 16 C -0.178 4.178 17 C -0.204 4.204 18 C -0.211 4.211 19 C -0.194 4.194 20 C 0.049 3.951 21 N -0.319 5.319 22 C -0.357 4.357 23 H 0.094 0.906 24 C -0.202 4.202 25 N -0.562 5.562 26 Si 0.740 3.260 27 H -0.216 1.216 28 H -0.216 1.216 29 H -0.206 1.206 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.232 0.768 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.113 0.887 38 H 0.130 0.870 39 H 0.123 0.877 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.047 0.953 46 H 0.090 0.910 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.702 8.310 -19.410 21.182 hybrid contribution 0.062 0.673 1.486 1.632 sum 1.764 8.984 -17.924 20.127 Atomic orbital electron populations 1.22231 0.97816 1.01534 0.99805 1.21006 0.92575 0.94759 0.86900 0.94731 1.22151 0.97484 0.90816 0.86419 0.88984 1.46063 1.69122 1.14058 1.07027 1.20215 0.77306 0.88681 0.83366 1.90687 1.49747 1.19114 1.81838 1.22678 1.01846 0.96335 0.95309 0.87039 1.23147 0.96914 0.98149 1.00053 1.23533 0.91417 0.97391 0.90556 1.88830 1.38472 1.70867 1.30710 1.22222 0.88336 0.97613 0.86027 0.88251 1.22484 0.96482 1.06979 0.91828 1.22887 1.02981 0.93370 1.01167 1.22934 1.02928 0.95897 0.99308 1.23392 0.96780 0.99502 0.99724 1.21406 0.95634 0.89428 0.88635 1.44489 1.58378 1.28949 1.00107 1.18948 1.36449 0.99876 0.80401 0.90632 1.24831 1.02018 0.95371 0.98007 1.69954 1.51038 1.04322 1.30917 0.86146 0.77302 0.77842 0.84687 1.21610 1.21616 1.20620 0.92867 0.92630 0.94524 0.76777 0.89507 0.89367 0.91907 0.88709 0.86973 0.87728 0.89266 0.88937 0.88585 0.91809 0.92061 0.95296 0.91041 0.93632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.14 37.15 0.34 -2.48 16 2 C 0.16 3.02 3.48 -66.95 -0.23 2.78 16 3 H 0.04 0.64 7.69 -51.93 -0.40 0.25 16 4 C 0.14 2.38 2.76 -66.09 -0.18 2.20 16 5 H 0.09 1.76 7.41 -51.93 -0.38 1.38 16 6 N -0.71 -9.73 5.05 -52.03 -0.26 -9.99 16 7 C 0.52 7.20 7.05 -10.99 -0.08 7.12 16 8 O -0.54 -9.56 14.98 5.56 0.08 -9.48 16 9 C -0.14 -1.45 3.07 -90.24 -0.28 -1.72 16 10 H 0.11 0.97 7.58 -51.93 -0.39 0.58 16 11 C -0.14 -1.20 6.70 -24.72 -0.17 -1.37 16 12 C 0.05 0.44 7.72 38.21 0.29 0.74 16 13 O -0.37 -4.21 9.58 -35.23 -0.34 -4.55 16 14 C 0.12 1.33 3.40 -26.15 -0.09 1.24 16 15 H 0.10 1.41 6.44 -51.93 -0.33 1.07 16 16 C -0.16 -1.60 5.55 -90.62 -0.50 -2.10 16 17 C -0.17 -1.50 9.88 -26.70 -0.26 -1.76 16 18 C -0.17 -1.63 10.22 -26.70 -0.27 -1.91 16 19 C -0.15 -2.97 6.77 -24.58 -0.17 -3.14 16 20 C 0.17 4.16 5.42 -2.53 -0.01 4.15 16 21 N -0.59 -14.49 3.13 -162.58 -0.51 -15.00 16 22 C -0.23 -6.12 9.85 -15.06 -0.15 -6.27 16 23 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 24 C -0.01 -0.15 5.40 -17.43 -0.09 -0.24 16 25 N -0.92 -26.46 10.69 55.49 0.59 -25.86 16 26 Si 0.91 21.62 29.56 -169.99 -5.03 16.59 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 29 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.05 1.05 8.04 -51.93 -0.42 0.63 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.40 4.43 8.31 -40.82 -0.34 4.09 16 34 H 0.09 0.69 7.74 -51.93 -0.40 0.29 16 35 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.11 1.04 7.96 -51.93 -0.41 0.63 16 39 H 0.10 1.01 7.06 -51.93 -0.37 0.64 16 40 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.03 0.76 8.07 -51.93 -0.42 0.34 16 46 H 0.07 1.89 6.94 -51.93 -0.36 1.53 16 47 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 371.52 15.07 5.60 5.60 Total: -1.00 -31.10 371.52 -9.72 -40.81 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -8.00 Total: 4.64 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -1.85 Total: -2.76 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: -0.18 Total: -50.85 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.25 Total: -14.03 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.10 -9.72 -40.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088760457.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.972 kcal (2) G-P(sol) polarization free energy of solvation -31.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds