Wall clock time and date at job start Fri Apr 10 2020 18:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 110.00267 * 2 1 4 4 C 1.54326 * 109.88324 * 238.90272 * 2 1 3 5 5 H 1.09001 * 110.87299 * 336.82668 * 4 2 1 6 6 N 1.46507 * 110.71983 * 100.02707 * 4 2 1 7 7 C 1.34776 * 119.99770 * 199.97555 * 6 4 2 8 8 O 1.21273 * 120.00489 * 0.02562 * 7 6 4 9 9 C 1.50701 * 119.99495 * 179.97438 * 7 6 4 10 10 H 1.09002 * 110.43684 * 57.45570 * 9 7 6 11 11 C 1.54811 * 110.49081 * 294.76790 * 9 7 6 12 12 C 1.54993 * 102.09194 * 262.20865 * 11 9 7 13 13 O 1.44387 * 103.49152 * 322.97229 * 12 11 9 14 14 C 1.43743 * 106.97051 * 40.06308 * 13 12 11 15 15 H 1.09006 * 109.88008 * 92.91039 * 14 13 12 16 16 C 1.53004 * 109.87543 * 214.06226 * 14 13 12 17 17 C 1.52991 * 117.49976 * 6.57743 * 16 14 13 18 18 C 1.52999 * 117.49906 * 297.91689 * 16 14 13 19 19 C 1.55156 * 102.94294 * 218.38644 * 4 2 1 20 20 C 1.54911 * 101.57935 * 35.50626 * 19 4 2 21 21 N 1.47024 * 109.88586 * 121.09842 * 2 1 3 22 22 C 1.36939 * 125.64031 * 298.32207 * 21 2 1 23 23 H 1.07996 * 120.00850 * 349.86676 * 22 21 2 24 24 C 1.38819 * 119.99359 * 169.86741 * 22 21 2 25 25 N 1.31615 * 120.00462 * 350.47816 * 24 22 21 26 26 Si 1.86801 * 119.99768 * 170.47902 * 24 22 21 27 27 H 1.48503 * 109.47240 * 94.13534 * 26 24 22 28 28 H 1.48493 * 109.47426 * 214.13436 * 26 24 22 29 29 H 1.48504 * 109.47276 * 334.13700 * 26 24 22 30 30 H 1.08997 * 109.46888 * 181.09574 * 1 2 3 31 31 H 1.08996 * 109.47343 * 301.09660 * 1 2 3 32 32 H 1.08998 * 109.46866 * 61.09732 * 1 2 3 33 33 H 0.97000 * 119.99445 * 19.98001 * 6 4 2 34 34 H 1.09003 * 110.90509 * 20.40500 * 11 9 7 35 35 H 1.08999 * 110.90845 * 144.00476 * 11 9 7 36 36 H 1.09000 * 110.62135 * 81.47869 * 12 11 9 37 37 H 1.09001 * 110.62051 * 204.31921 * 12 11 9 38 38 H 1.09000 * 115.54562 * 152.25192 * 16 14 13 39 39 H 1.09006 * 117.49882 * 0.02562 * 17 16 14 40 40 H 1.09003 * 117.49491 * 145.01887 * 17 16 14 41 41 H 1.08997 * 117.50101 * 214.97877 * 18 16 14 42 42 H 1.09006 * 117.49669 * 359.97438 * 18 16 14 43 43 H 1.09005 * 111.00460 * 153.57501 * 19 4 2 44 44 H 1.08998 * 111.01227 * 277.39145 * 19 4 2 45 45 H 1.08999 * 110.36836 * 81.82746 * 20 19 4 46 46 H 1.09003 * 110.36239 * 204.14837 * 20 19 4 47 47 H 0.96998 * 120.00222 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7496 -1.2427 5 1 1.3064 -1.4459 -1.6211 6 7 2.4555 0.1960 -2.2876 7 6 2.5559 -0.2160 -3.5668 8 8 2.3142 -1.3694 -3.8532 9 6 2.9675 0.7568 -4.6416 10 1 3.9368 1.1964 -4.4062 11 6 1.8958 1.8609 -4.8125 12 6 1.0830 1.3395 -6.0249 13 8 2.0884 0.7461 -6.8744 14 6 3.0114 0.0574 -6.0141 15 1 2.7121 -0.9854 -5.9084 16 6 4.4245 0.1398 -6.5950 17 6 4.6313 1.0224 -7.8274 18 6 4.6643 -0.5019 -7.9631 19 6 3.2876 -1.5142 -0.6924 20 6 2.8145 -1.8794 0.7368 21 7 2.0300 -0.7141 1.1839 22 6 1.8050 -0.3556 2.4862 23 1 1.3586 0.6012 2.7136 24 6 2.1506 -1.2220 3.5142 25 7 2.5180 -2.4557 3.2396 26 14 2.0944 -0.6370 5.2873 27 1 0.7810 -0.9901 5.8837 28 1 3.1806 -1.2920 6.0594 29 1 2.2767 0.8362 5.3286 30 1 -0.3633 -1.0275 0.0197 31 1 -0.3634 0.5307 0.8799 32 1 -0.3633 0.4967 -0.8997 33 1 2.6485 1.1186 -2.0585 34 1 1.2672 1.9334 -3.9250 35 1 2.3592 2.8211 -5.0388 36 1 0.3578 0.5903 -5.7073 37 1 0.5836 2.1632 -6.5350 38 1 5.2351 0.0926 -5.8679 39 1 3.7607 1.5449 -8.2241 40 1 5.5783 1.5557 -7.9112 41 1 5.6330 -0.9708 -8.1362 42 1 3.8155 -0.9830 -8.4491 43 1 3.4852 -2.4111 -1.2796 44 1 4.1656 -0.8691 -0.6610 45 1 2.1886 -2.7715 0.7128 46 1 3.6716 -2.0338 1.3922 47 1 2.7599 -3.0610 3.9579 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088760457.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:06 Heat of formation + Delta-G solvation = -53.299671 kcal Electronic energy + Delta-G solvation = -26359.891873 eV Core-core repulsion = 22736.149657 eV Total energy + Delta-G solvation = -3623.742216 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.74445 -40.19970 -38.93201 -37.26472 -35.63077 -34.09605 -33.12638 -32.06831 -30.46526 -30.13714 -26.80290 -25.88518 -24.77089 -23.53887 -23.14460 -22.16206 -21.55543 -21.37241 -20.85664 -18.70058 -18.31712 -17.57523 -17.39987 -16.72069 -16.41399 -16.30011 -15.98626 -15.69676 -15.48048 -15.29416 -14.80479 -14.58265 -14.31664 -14.01395 -13.84321 -13.41672 -13.21150 -12.93684 -12.84698 -12.81386 -12.61767 -12.48514 -12.33999 -12.28796 -12.21380 -12.13580 -12.02166 -11.91425 -11.62695 -11.53758 -11.19299 -11.06396 -10.90211 -10.68266 -10.44052 -10.04427 -8.87651 -7.85822 -5.21142 1.48067 1.48819 1.56846 1.58315 2.04085 2.51873 2.82165 2.92087 3.34539 3.48945 3.52537 3.60093 3.76375 3.83385 3.92082 4.00324 4.04020 4.13540 4.19827 4.27686 4.36370 4.44434 4.49199 4.60579 4.61560 4.64393 4.80373 4.81593 4.85476 4.92087 4.93947 4.98530 5.04118 5.06227 5.07428 5.13900 5.25127 5.37196 5.39270 5.48296 5.55432 5.62474 5.69997 5.90184 6.20849 6.54563 7.08011 7.22633 7.76881 8.42947 9.26289 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.030511 B = 0.002905 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.469985 B = 9635.070720 C =10053.930765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.152 3.848 3 H 0.059 0.941 4 C 0.154 3.846 5 H 0.075 0.925 6 N -0.699 5.699 7 C 0.520 3.480 8 O -0.580 6.580 9 C -0.130 4.130 10 H 0.138 0.862 11 C -0.135 4.135 12 C 0.039 3.961 13 O -0.381 6.381 14 C 0.115 3.885 15 H 0.064 0.936 16 C -0.168 4.168 17 C -0.152 4.152 18 C -0.183 4.183 19 C -0.139 4.139 20 C 0.182 3.818 21 N -0.613 5.613 22 C -0.231 4.231 23 H 0.085 0.915 24 C -0.066 4.066 25 N -0.951 5.951 26 Si 0.975 3.025 27 H -0.290 1.290 28 H -0.297 1.297 29 H -0.265 1.265 30 H 0.029 0.971 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.416 0.584 34 H 0.094 0.906 35 H 0.115 0.885 36 H 0.046 0.954 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.105 0.895 42 H 0.083 0.917 43 H 0.063 0.937 44 H 0.075 0.925 45 H -0.007 1.007 46 H 0.038 0.962 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.237 12.616 -20.323 24.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.045 3.955 3 H 0.076 0.924 4 C 0.048 3.952 5 H 0.093 0.907 6 N -0.351 5.351 7 C 0.308 3.692 8 O -0.459 6.459 9 C -0.152 4.152 10 H 0.156 0.844 11 C -0.173 4.173 12 C -0.037 4.037 13 O -0.301 6.301 14 C 0.057 3.943 15 H 0.082 0.918 16 C -0.186 4.186 17 C -0.189 4.189 18 C -0.220 4.220 19 C -0.179 4.179 20 C 0.056 3.944 21 N -0.338 5.338 22 C -0.360 4.360 23 H 0.103 0.897 24 C -0.259 4.259 25 N -0.600 5.600 26 Si 0.804 3.196 27 H -0.217 1.217 28 H -0.224 1.224 29 H -0.189 1.189 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.253 0.747 34 H 0.113 0.887 35 H 0.134 0.866 36 H 0.064 0.936 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.116 0.884 40 H 0.126 0.874 41 H 0.123 0.877 42 H 0.102 0.898 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.011 0.989 46 H 0.057 0.943 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.097 11.752 -20.548 23.764 hybrid contribution -0.121 -0.396 1.736 1.785 sum 1.976 11.356 -18.811 22.062 Atomic orbital electron populations 1.22122 0.96730 1.00455 1.01245 1.21218 0.93327 0.95291 0.85627 0.92368 1.21674 0.95928 0.90905 0.86723 0.90692 1.45816 1.68884 1.14209 1.06156 1.20859 0.76011 0.88656 0.83707 1.90688 1.51438 1.21348 1.82458 1.22675 1.03774 0.95803 0.92926 0.84430 1.23195 0.96072 0.98289 0.99731 1.23724 0.91057 0.97639 0.91314 1.88827 1.38917 1.70899 1.31407 1.22082 0.89202 0.96018 0.87034 0.91814 1.22510 0.95750 1.08059 0.92330 1.22907 1.03572 0.92806 0.99642 1.22990 1.03109 0.96755 0.99105 1.23191 0.97954 1.00111 0.96599 1.21108 0.93839 0.88637 0.90811 1.44738 1.58957 1.29169 1.00974 1.19342 1.35048 0.99970 0.81647 0.89699 1.25652 1.02712 0.95590 1.01961 1.70162 1.52796 1.05489 1.31509 0.85119 0.76646 0.78003 0.79868 1.21703 1.22387 1.18939 0.95140 0.93413 0.90851 0.74681 0.88745 0.86613 0.93573 0.86276 0.86019 0.88354 0.87390 0.87713 0.89842 0.91784 0.90677 0.98907 0.94348 0.94442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.11 9.14 71.98 0.66 -4.45 16 2 C 0.15 5.65 3.48 45.34 0.16 5.80 16 3 H 0.06 1.95 7.69 -2.39 -0.02 1.93 16 4 C 0.15 5.21 2.76 46.18 0.13 5.34 16 5 H 0.07 2.86 7.41 -2.39 -0.02 2.84 16 6 N -0.70 -17.25 5.05 -436.91 -2.21 -19.46 16 7 C 0.52 13.50 7.05 87.66 0.62 14.12 16 8 O -0.58 -20.63 14.98 -3.01 -0.05 -20.67 16 9 C -0.13 -2.33 3.07 -10.55 -0.03 -2.36 16 10 H 0.14 1.81 7.58 -2.39 -0.02 1.79 16 11 C -0.14 -1.73 6.70 31.89 0.21 -1.52 16 12 C 0.04 0.63 7.72 72.66 0.56 1.19 16 13 O -0.38 -8.14 9.58 -148.98 -1.43 -9.57 16 14 C 0.11 2.50 3.40 30.97 0.11 2.61 16 15 H 0.06 1.85 6.44 -2.38 -0.02 1.84 16 16 C -0.17 -3.07 5.55 -10.80 -0.06 -3.13 16 17 C -0.15 -2.36 9.88 30.61 0.30 -2.06 16 18 C -0.18 -3.23 10.22 30.62 0.31 -2.91 16 19 C -0.14 -5.33 6.77 31.99 0.22 -5.12 16 20 C 0.18 9.00 5.42 86.86 0.47 9.47 16 21 N -0.61 -30.01 3.13 -668.27 -2.09 -32.10 16 22 C -0.23 -12.37 9.85 84.03 0.83 -11.54 16 23 H 0.09 4.29 7.85 -2.91 -0.02 4.27 16 24 C -0.07 -3.68 5.40 84.86 0.46 -3.22 16 25 N -0.95 -56.98 10.69 21.65 0.23 -56.75 16 26 Si 0.98 44.83 29.56 68.60 2.03 46.86 16 27 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 28 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 29 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 30 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.05 1.73 8.04 -2.39 -0.02 1.71 16 32 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.42 7.53 8.31 -92.71 -0.77 6.76 16 34 H 0.09 1.11 7.74 -2.39 -0.02 1.09 16 35 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.12 1.96 7.96 -2.39 -0.02 1.94 16 39 H 0.10 1.67 7.06 -2.38 -0.02 1.65 16 40 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 43 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 44 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 45 H -0.01 -0.40 8.07 -2.39 -0.02 -0.41 16 46 H 0.04 2.13 6.94 -2.39 -0.02 2.11 16 47 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -70.47 371.52 1.61 -68.86 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 0.18 Total: 20.59 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: 4.94 Total: 2.23 kcal Atomic # 7 Polarization: -104.23 SS G_CDS: -4.07 Total: -108.30 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -1.47 Total: -30.24 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -70.47 1.61 -68.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088760457.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.563 kcal (2) G-P(sol) polarization free energy of solvation -70.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds