Wall clock time and date at job start Fri Apr 10 2020 18:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00202 * 2 1 4 4 H 1.48496 * 109.47212 * 240.00184 * 3 2 1 5 5 H 1.48506 * 109.46876 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46551 * 119.99943 * 3 2 1 7 7 C 1.38817 * 119.99572 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99568 * 163.09656 * 7 2 1 9 9 N 1.36934 * 120.00088 * 343.09288 * 7 2 1 10 10 C 1.46923 * 120.63317 * 151.89365 * 9 7 2 11 11 C 1.53191 * 108.77916 * 126.31061 * 10 9 7 12 12 H 1.09001 * 109.52940 * 294.74512 * 11 10 9 13 13 N 1.46501 * 109.50200 * 174.65648 * 11 10 9 14 14 C 1.34779 * 119.99836 * 85.17278 * 13 11 10 15 15 O 1.21277 * 119.99912 * 359.97438 * 14 13 11 16 16 C 1.50703 * 119.99644 * 179.73134 * 14 13 11 17 17 C 1.53002 * 117.49296 * 249.01659 * 16 14 13 18 18 C 1.53001 * 117.49411 * 180.36483 * 16 14 13 19 19 C 1.53052 * 109.30305 * 54.70826 * 11 10 9 20 20 C 1.52946 * 109.57034 * 298.74852 * 19 11 10 21 21 C 1.53077 * 109.56437 * 301.01503 * 20 19 11 22 22 C 1.53105 * 109.16431 * 296.85017 * 21 20 19 23 23 O 1.42902 * 109.41001 * 302.52314 * 22 21 20 24 24 C 1.42901 * 114.12767 * 61.18294 * 23 22 21 25 25 C 1.53086 * 109.54786 * 181.23804 * 20 19 11 26 26 C 1.46939 * 120.63431 * 331.86943 * 9 7 2 27 27 H 0.97007 * 119.99882 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.58943 * 6.52386 * 10 9 7 29 29 H 1.08998 * 109.58833 * 246.09889 * 10 9 7 30 30 H 0.96996 * 120.00181 * 265.17588 * 13 11 10 31 31 H 1.08999 * 115.55324 * 34.68971 * 16 14 13 32 32 H 1.08997 * 117.50220 * 0.02562 * 17 16 14 33 33 H 1.09003 * 117.49259 * 145.01931 * 17 16 14 34 34 H 1.09010 * 117.49481 * 214.97550 * 18 16 14 35 35 H 1.09003 * 117.50220 * 359.96514 * 18 16 14 36 36 H 1.08999 * 109.45540 * 58.77851 * 19 11 10 37 37 H 1.08997 * 109.45638 * 178.73787 * 19 11 10 38 38 H 1.08997 * 109.52292 * 56.76162 * 21 20 19 39 39 H 1.09004 * 109.51594 * 176.94135 * 21 20 19 40 40 H 1.09004 * 109.48000 * 182.54774 * 22 21 20 41 41 H 1.09001 * 109.48284 * 62.50659 * 22 21 20 42 42 H 1.09000 * 109.48878 * 178.82889 * 24 23 22 43 43 H 1.09000 * 109.48433 * 58.78142 * 24 23 22 44 44 H 1.09001 * 109.52141 * 183.05057 * 25 20 19 45 45 H 1.08995 * 109.52159 * 303.23801 * 25 20 19 46 46 H 1.08997 * 109.58205 * 113.69445 * 26 9 7 47 47 H 1.09003 * 109.69603 * 353.34808 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6962 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0552 -1.2223 -0.2725 9 7 1.3698 -2.3626 0.3438 10 6 1.8145 -3.6529 -0.2002 11 6 2.0693 -4.6170 0.9628 12 1 2.9033 -4.2523 1.5623 13 7 2.3902 -5.9455 0.4353 14 6 3.6572 -6.2435 0.0852 15 8 4.5313 -5.4117 0.2063 16 6 3.9884 -7.6122 -0.4517 17 6 4.8395 -8.5294 0.4289 18 6 5.4461 -7.8914 -0.8233 19 6 0.8133 -4.7027 1.8333 20 6 0.4939 -3.3222 2.4090 21 6 1.6801 -2.8263 3.2399 22 6 1.8904 -3.7686 4.4281 23 8 0.6913 -3.8306 5.2031 24 6 -0.4398 -4.3345 4.4898 25 6 -0.7444 -3.4146 3.3043 26 6 0.2251 -2.3412 1.2649 27 1 -0.4850 0.8401 0.0004 28 1 2.7350 -3.5129 -0.7669 29 1 1.0411 -4.0613 -0.8506 30 1 1.6910 -6.6107 0.3381 31 1 3.2151 -8.0772 -1.0631 32 1 5.1594 -8.1430 1.3966 33 1 4.6263 -9.5978 0.3965 34 1 5.6318 -8.5405 -1.6792 35 1 6.1654 -7.0850 -0.6801 36 1 -0.0253 -5.0464 1.2278 37 1 0.9842 -5.4052 2.6489 38 1 2.5777 -2.8135 2.6217 39 1 1.4737 -1.8201 3.6048 40 1 2.7052 -3.3952 5.0484 41 1 2.1388 -4.7650 4.0624 42 1 -1.3030 -4.3688 5.1545 43 1 -0.2218 -5.3381 4.1246 44 1 -1.0037 -2.4214 3.6710 45 1 -1.5780 -3.8218 2.7321 46 1 -0.6779 -2.6396 0.7324 47 1 0.0966 -1.3365 1.6678 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089917519.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:16 Heat of formation + Delta-G solvation = -40.279628 kcal Electronic energy + Delta-G solvation = -27505.257868 eV Core-core repulsion = 23882.080243 eV Total energy + Delta-G solvation = -3623.177625 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.29727 -39.44230 -37.14377 -36.01002 -34.34104 -33.52410 -31.32737 -30.70381 -29.30314 -27.15586 -25.43643 -24.56763 -23.27002 -22.95838 -22.56038 -21.51782 -20.23584 -19.93483 -18.07625 -17.16092 -16.72490 -16.16997 -15.68875 -15.39413 -15.19705 -14.71805 -14.63632 -14.30615 -14.06806 -13.81457 -13.68879 -13.41899 -13.19349 -12.60693 -12.50815 -12.37155 -11.88868 -11.68596 -11.41587 -11.37327 -11.02416 -10.90364 -10.81364 -10.76296 -10.71975 -10.60171 -10.42480 -10.21310 -10.02690 -9.92536 -9.79360 -9.62884 -9.42084 -8.91971 -8.83587 -8.40184 -6.67731 -5.79846 -3.22262 2.66108 3.31167 3.40621 3.45493 3.48552 3.80113 4.17482 4.50079 4.64491 4.74505 4.77525 4.99194 5.09591 5.18516 5.26963 5.36894 5.42318 5.42779 5.46421 5.51079 5.57850 5.64922 5.70316 5.76814 5.81560 5.84344 5.93402 6.00800 6.02273 6.16044 6.17384 6.23341 6.37383 6.51328 6.63979 6.67734 6.74767 6.83645 6.93770 6.99324 7.28645 7.49661 7.61253 7.76160 7.82078 8.42125 8.49413 9.20569 9.82541 10.38264 11.28729 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.010792 B = 0.005612 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.853636 B = 4988.024987 C = 6756.694583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.006 3.994 3 Si 0.901 3.099 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.251 4.251 8 H 0.066 0.934 9 N -0.583 5.583 10 C 0.142 3.858 11 C 0.124 3.876 12 H 0.089 0.911 13 N -0.719 5.719 14 C 0.538 3.462 15 O -0.537 6.537 16 C -0.193 4.193 17 C -0.155 4.155 18 C -0.149 4.149 19 C -0.109 4.109 20 C -0.078 4.078 21 C -0.134 4.134 22 C 0.059 3.941 23 O -0.388 6.388 24 C 0.062 3.938 25 C -0.140 4.140 26 C 0.184 3.816 27 H 0.254 0.746 28 H 0.057 0.943 29 H 0.017 0.983 30 H 0.395 0.605 31 H 0.121 0.879 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.044 0.956 42 H 0.085 0.915 43 H 0.045 0.955 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.019 0.981 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.442 -16.429 4.345 17.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.193 4.193 3 Si 0.731 3.269 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.305 5.305 10 C 0.014 3.986 11 C 0.019 3.981 12 H 0.107 0.893 13 N -0.369 5.369 14 C 0.324 3.676 15 O -0.414 6.414 16 C -0.214 4.214 17 C -0.193 4.193 18 C -0.186 4.186 19 C -0.147 4.147 20 C -0.080 4.080 21 C -0.171 4.171 22 C -0.017 4.017 23 O -0.307 6.307 24 C -0.015 4.015 25 C -0.178 4.178 26 C 0.058 3.942 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.034 0.966 30 H 0.228 0.772 31 H 0.139 0.861 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.126 0.874 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.062 0.938 42 H 0.103 0.897 43 H 0.063 0.937 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.037 0.963 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.953 -15.571 4.597 16.352 hybrid contribution -0.126 0.416 -0.516 0.675 sum 1.827 -15.155 4.080 15.801 Atomic orbital electron populations 1.70015 1.05214 1.25621 1.53860 1.25000 0.95247 0.98305 1.00707 0.86389 0.78962 0.83323 0.78265 1.20871 1.21644 1.20925 1.19138 0.92598 0.84533 1.41788 0.91674 1.43918 1.35598 1.01131 1.49862 1.21197 0.97949 0.86864 0.92609 1.21809 0.97800 0.81556 0.96972 0.89266 1.46059 1.09165 1.15988 1.65699 1.19590 0.82642 0.87939 0.77453 1.90719 1.47170 1.49676 1.53839 1.22236 0.97070 0.95879 1.06204 1.22919 1.02262 0.97995 0.96113 1.22941 0.94008 1.03111 0.98588 1.21809 0.96997 0.97743 0.98188 1.21179 0.94118 0.95686 0.97055 1.22112 0.99886 0.99221 0.95920 1.22670 0.86727 0.98716 0.93614 1.87858 1.18455 1.86022 1.38413 1.22564 0.88783 0.95983 0.94138 1.22133 0.98249 1.00960 0.96499 1.20837 0.88498 0.97885 0.87023 0.93601 0.92404 0.96552 0.77228 0.86099 0.88358 0.88045 0.88133 0.87377 0.92093 0.92763 0.89793 0.91306 0.89681 0.93796 0.89711 0.93675 0.90878 0.91311 0.96303 0.89078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.75 11.19 55.49 0.62 -25.13 16 2 C 0.01 0.17 4.92 -17.43 -0.09 0.08 16 3 Si 0.90 21.90 29.59 -169.99 -5.03 16.87 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.25 -6.87 9.58 -15.06 -0.14 -7.01 16 8 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 9 N -0.58 -14.21 2.51 -172.37 -0.43 -14.64 16 10 C 0.14 3.01 6.09 -3.71 -0.02 2.99 16 11 C 0.12 2.14 2.27 -67.80 -0.15 1.99 16 12 H 0.09 1.77 5.72 -51.93 -0.30 1.47 16 13 N -0.72 -10.10 5.08 -53.68 -0.27 -10.37 16 14 C 0.54 8.14 7.58 -10.98 -0.08 8.05 16 15 O -0.54 -10.55 15.92 5.56 0.09 -10.47 16 16 C -0.19 -2.08 6.19 -91.77 -0.57 -2.65 16 17 C -0.16 -1.41 10.24 -26.70 -0.27 -1.68 16 18 C -0.15 -1.51 10.05 -26.70 -0.27 -1.77 16 19 C -0.11 -1.69 3.63 -26.73 -0.10 -1.79 16 20 C -0.08 -1.37 0.51 -154.41 -0.08 -1.45 16 21 C -0.13 -2.42 4.48 -26.64 -0.12 -2.54 16 22 C 0.06 0.91 6.57 37.21 0.24 1.16 16 23 O -0.39 -6.18 10.76 -35.23 -0.38 -6.56 16 24 C 0.06 0.84 6.57 37.21 0.24 1.09 16 25 C -0.14 -2.15 4.92 -26.63 -0.13 -2.28 16 26 C 0.18 4.14 3.97 -3.76 -0.01 4.13 16 27 H 0.25 7.06 8.31 -40.82 -0.34 6.73 16 28 H 0.06 1.34 7.93 -51.93 -0.41 0.93 16 29 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.39 4.27 8.60 -40.82 -0.35 3.91 16 31 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.10 0.79 8.14 -51.92 -0.42 0.36 16 35 H 0.11 1.30 7.67 -51.93 -0.40 0.91 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.05 0.76 5.03 -51.93 -0.26 0.50 16 38 H 0.08 1.69 5.93 -51.93 -0.31 1.38 16 39 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.04 0.65 6.64 -51.93 -0.34 0.30 16 42 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.05 0.56 6.59 -51.93 -0.34 0.22 16 44 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 LS Contribution 358.03 15.07 5.40 5.40 Total: -1.00 -31.32 358.03 -9.21 -40.53 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -7.65 Total: 6.06 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -1.55 Total: -1.69 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: -0.08 Total: -50.14 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.29 Total: -17.02 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.32 -9.21 -40.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089917519.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.255 kcal (2) G-P(sol) polarization free energy of solvation -31.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds