Wall clock time and date at job start Fri Apr 10 2020 18:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00202 * 2 1 4 4 H 1.48496 * 109.47212 * 240.00184 * 3 2 1 5 5 H 1.48506 * 109.46876 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46551 * 119.99943 * 3 2 1 7 7 C 1.38817 * 119.99572 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99568 * 163.09656 * 7 2 1 9 9 N 1.36934 * 120.00088 * 343.09288 * 7 2 1 10 10 C 1.46923 * 120.63317 * 151.89365 * 9 7 2 11 11 C 1.53191 * 108.77916 * 126.31061 * 10 9 7 12 12 H 1.09001 * 109.52940 * 294.74512 * 11 10 9 13 13 N 1.46501 * 109.50200 * 174.65648 * 11 10 9 14 14 C 1.34779 * 119.99836 * 85.17278 * 13 11 10 15 15 O 1.21277 * 119.99912 * 359.97438 * 14 13 11 16 16 C 1.50703 * 119.99644 * 179.73134 * 14 13 11 17 17 C 1.53002 * 117.49296 * 249.01659 * 16 14 13 18 18 C 1.53001 * 117.49411 * 180.36483 * 16 14 13 19 19 C 1.53052 * 109.30305 * 54.70826 * 11 10 9 20 20 C 1.52946 * 109.57034 * 298.74852 * 19 11 10 21 21 C 1.53077 * 109.56437 * 301.01503 * 20 19 11 22 22 C 1.53105 * 109.16431 * 296.85017 * 21 20 19 23 23 O 1.42902 * 109.41001 * 302.52314 * 22 21 20 24 24 C 1.42901 * 114.12767 * 61.18294 * 23 22 21 25 25 C 1.53086 * 109.54786 * 181.23804 * 20 19 11 26 26 C 1.46939 * 120.63431 * 331.86943 * 9 7 2 27 27 H 0.97007 * 119.99882 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.58943 * 6.52386 * 10 9 7 29 29 H 1.08998 * 109.58833 * 246.09889 * 10 9 7 30 30 H 0.96996 * 120.00181 * 265.17588 * 13 11 10 31 31 H 1.08999 * 115.55324 * 34.68971 * 16 14 13 32 32 H 1.08997 * 117.50220 * 0.02562 * 17 16 14 33 33 H 1.09003 * 117.49259 * 145.01931 * 17 16 14 34 34 H 1.09010 * 117.49481 * 214.97550 * 18 16 14 35 35 H 1.09003 * 117.50220 * 359.96514 * 18 16 14 36 36 H 1.08999 * 109.45540 * 58.77851 * 19 11 10 37 37 H 1.08997 * 109.45638 * 178.73787 * 19 11 10 38 38 H 1.08997 * 109.52292 * 56.76162 * 21 20 19 39 39 H 1.09004 * 109.51594 * 176.94135 * 21 20 19 40 40 H 1.09004 * 109.48000 * 182.54774 * 22 21 20 41 41 H 1.09001 * 109.48284 * 62.50659 * 22 21 20 42 42 H 1.09000 * 109.48878 * 178.82889 * 24 23 22 43 43 H 1.09000 * 109.48433 * 58.78142 * 24 23 22 44 44 H 1.09001 * 109.52141 * 183.05057 * 25 20 19 45 45 H 1.08995 * 109.52159 * 303.23801 * 25 20 19 46 46 H 1.08997 * 109.58205 * 113.69445 * 26 9 7 47 47 H 1.09003 * 109.69603 * 353.34808 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6962 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0552 -1.2223 -0.2725 9 7 1.3698 -2.3626 0.3438 10 6 1.8145 -3.6529 -0.2002 11 6 2.0693 -4.6170 0.9628 12 1 2.9033 -4.2523 1.5623 13 7 2.3902 -5.9455 0.4353 14 6 3.6572 -6.2435 0.0852 15 8 4.5313 -5.4117 0.2063 16 6 3.9884 -7.6122 -0.4517 17 6 4.8395 -8.5294 0.4289 18 6 5.4461 -7.8914 -0.8233 19 6 0.8133 -4.7027 1.8333 20 6 0.4939 -3.3222 2.4090 21 6 1.6801 -2.8263 3.2399 22 6 1.8904 -3.7686 4.4281 23 8 0.6913 -3.8306 5.2031 24 6 -0.4398 -4.3345 4.4898 25 6 -0.7444 -3.4146 3.3043 26 6 0.2251 -2.3412 1.2649 27 1 -0.4850 0.8401 0.0004 28 1 2.7350 -3.5129 -0.7669 29 1 1.0411 -4.0613 -0.8506 30 1 1.6910 -6.6107 0.3381 31 1 3.2151 -8.0772 -1.0631 32 1 5.1594 -8.1430 1.3966 33 1 4.6263 -9.5978 0.3965 34 1 5.6318 -8.5405 -1.6792 35 1 6.1654 -7.0850 -0.6801 36 1 -0.0253 -5.0464 1.2278 37 1 0.9842 -5.4052 2.6489 38 1 2.5777 -2.8135 2.6217 39 1 1.4737 -1.8201 3.6048 40 1 2.7052 -3.3952 5.0484 41 1 2.1388 -4.7650 4.0624 42 1 -1.3030 -4.3688 5.1545 43 1 -0.2218 -5.3381 4.1246 44 1 -1.0037 -2.4214 3.6710 45 1 -1.5780 -3.8218 2.7321 46 1 -0.6779 -2.6396 0.7324 47 1 0.0966 -1.3365 1.6678 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089917519.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:16 Heat of formation + Delta-G solvation = -61.131583 kcal Electronic energy + Delta-G solvation = -27506.162076 eV Core-core repulsion = 23882.080243 eV Total energy + Delta-G solvation = -3624.081833 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.66765 -40.65714 -38.51578 -37.04509 -35.89855 -35.11617 -33.15449 -32.02681 -30.85273 -28.70056 -27.32366 -25.69915 -24.57657 -24.50023 -23.29767 -23.04211 -21.71846 -21.20477 -19.42568 -18.69480 -18.24271 -17.60940 -16.90329 -16.70216 -16.48934 -16.35317 -15.93637 -15.67333 -15.42520 -15.26073 -15.12869 -14.97193 -14.75603 -14.22530 -13.92176 -13.49878 -13.22579 -13.09609 -13.01557 -12.77632 -12.69900 -12.41580 -12.38029 -12.18911 -12.13727 -11.93876 -11.86019 -11.65828 -11.50333 -11.39182 -11.15994 -11.02525 -10.76818 -10.61247 -10.27665 -10.10412 -8.68535 -7.92310 -5.37219 1.40956 1.43118 1.49812 1.53968 2.14380 2.48028 2.95903 3.02039 3.21511 3.58126 3.68231 3.75263 3.86866 3.92347 3.99850 4.02226 4.14830 4.18031 4.22143 4.30753 4.33067 4.38192 4.50503 4.55219 4.74264 4.75732 4.76808 4.84957 4.88832 4.92559 4.95769 4.99131 5.07327 5.11368 5.15254 5.25905 5.26240 5.29789 5.42499 5.53334 5.57292 5.62893 5.73209 6.31545 6.34679 6.63241 7.11158 7.33407 7.80535 8.30544 9.12657 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.010792 B = 0.005612 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.853636 B = 4988.024987 C = 6756.694583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.038 4.038 3 Si 0.957 3.043 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.281 1.281 7 C -0.264 4.264 8 H 0.050 0.950 9 N -0.599 5.599 10 C 0.145 3.855 11 C 0.141 3.859 12 H 0.063 0.937 13 N -0.705 5.705 14 C 0.531 3.469 15 O -0.592 6.592 16 C -0.197 4.197 17 C -0.134 4.134 18 C -0.158 4.158 19 C -0.098 4.098 20 C -0.072 4.072 21 C -0.129 4.129 22 C 0.070 3.930 23 O -0.400 6.400 24 C 0.063 3.937 25 C -0.136 4.136 26 C 0.194 3.806 27 H 0.251 0.749 28 H 0.026 0.974 29 H 0.020 0.980 30 H 0.416 0.584 31 H 0.154 0.846 32 H 0.085 0.915 33 H 0.137 0.863 34 H 0.128 0.872 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.056 0.944 39 H 0.041 0.959 40 H 0.094 0.906 41 H 0.060 0.940 42 H 0.111 0.889 43 H 0.069 0.931 44 H 0.053 0.947 45 H 0.086 0.914 46 H 0.001 0.999 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.757 -19.885 5.273 20.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.234 4.234 3 Si 0.786 3.214 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.208 1.208 7 C -0.394 4.394 8 H 0.068 0.932 9 N -0.322 5.322 10 C 0.018 3.982 11 C 0.034 3.966 12 H 0.081 0.919 13 N -0.356 5.356 14 C 0.319 3.681 15 O -0.473 6.473 16 C -0.218 4.218 17 C -0.172 4.172 18 C -0.195 4.195 19 C -0.136 4.136 20 C -0.075 4.075 21 C -0.167 4.167 22 C -0.007 4.007 23 O -0.319 6.319 24 C -0.014 4.014 25 C -0.175 4.175 26 C 0.069 3.931 27 H 0.061 0.939 28 H 0.045 0.955 29 H 0.037 0.963 30 H 0.253 0.747 31 H 0.172 0.828 32 H 0.103 0.897 33 H 0.156 0.844 34 H 0.147 0.853 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.112 0.888 41 H 0.078 0.922 42 H 0.129 0.871 43 H 0.087 0.913 44 H 0.072 0.928 45 H 0.104 0.896 46 H 0.019 0.981 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.243 -19.085 5.527 19.908 hybrid contribution 0.116 1.511 -0.874 1.749 sum 1.360 -17.574 4.653 18.231 Atomic orbital electron populations 1.70140 1.06231 1.25925 1.54850 1.25616 0.95998 1.00858 1.00920 0.85500 0.77860 0.79912 0.78175 1.20492 1.21273 1.20753 1.19263 0.92245 0.86230 1.41646 0.93226 1.44077 1.35907 1.01420 1.50769 1.21214 0.96258 0.86687 0.94076 1.21283 0.97920 0.82293 0.95072 0.91887 1.45851 1.09804 1.14937 1.65034 1.20465 0.82048 0.89278 0.76323 1.90704 1.48743 1.51814 1.56005 1.22274 0.98351 0.93583 1.07623 1.23041 0.99949 0.99357 0.94822 1.23016 0.92865 1.03035 1.00629 1.21727 0.96280 0.96702 0.98846 1.21007 0.95292 0.95603 0.95565 1.22003 0.98888 0.98866 0.96928 1.22570 0.87234 0.98512 0.92375 1.87862 1.18936 1.86307 1.38767 1.22756 0.88925 0.96071 0.93600 1.22112 0.97300 1.00927 0.97114 1.20632 0.87209 0.97315 0.87970 0.93944 0.95500 0.96256 0.74707 0.82811 0.89669 0.84449 0.85345 0.90355 0.90351 0.89609 0.92515 0.94040 0.88775 0.92170 0.87104 0.91315 0.92788 0.89560 0.98057 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.92 11.19 21.65 0.24 -54.67 16 2 C -0.04 -2.16 4.92 84.86 0.42 -1.74 16 3 Si 0.96 46.64 29.59 68.60 2.03 48.67 16 4 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 7 C -0.26 -15.21 9.58 84.04 0.81 -14.40 16 8 H 0.05 2.95 7.88 -2.91 -0.02 2.93 16 9 N -0.60 -30.62 2.51 -699.27 -1.76 -32.37 16 10 C 0.14 6.38 6.09 86.36 0.53 6.91 16 11 C 0.14 4.84 2.27 45.07 0.10 4.94 16 12 H 0.06 2.57 5.72 -2.39 -0.01 2.55 16 13 N -0.71 -18.61 5.08 -442.14 -2.25 -20.86 16 14 C 0.53 15.64 7.58 87.66 0.66 16.30 16 15 O -0.59 -24.06 15.92 -3.02 -0.05 -24.11 16 16 C -0.20 -3.73 6.19 -11.54 -0.07 -3.80 16 17 C -0.13 -2.00 10.24 30.62 0.31 -1.68 16 18 C -0.16 -2.90 10.05 30.62 0.31 -2.59 16 19 C -0.10 -2.81 3.63 30.59 0.11 -2.70 16 20 C -0.07 -2.53 0.51 -52.11 -0.03 -2.56 16 21 C -0.13 -4.76 4.48 30.66 0.14 -4.63 16 22 C 0.07 2.04 6.57 72.02 0.47 2.51 16 23 O -0.40 -11.62 10.76 -148.98 -1.60 -13.22 16 24 C 0.06 1.47 6.57 72.02 0.47 1.94 16 25 C -0.14 -3.95 4.92 30.66 0.15 -3.80 16 26 C 0.19 9.10 3.97 86.33 0.34 9.45 16 27 H 0.25 14.47 8.31 -92.70 -0.77 13.69 16 28 H 0.03 1.31 7.93 -2.39 -0.02 1.30 16 29 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.42 7.53 8.60 -92.71 -0.80 6.73 16 31 H 0.15 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.13 1.61 8.14 -2.38 -0.02 1.59 16 35 H 0.08 1.92 7.67 -2.39 -0.02 1.90 16 36 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.09 2.01 5.03 -2.39 -0.01 2.00 16 38 H 0.06 2.40 5.93 -2.39 -0.01 2.38 16 39 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 40 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16 41 H 0.06 1.58 6.64 -2.39 -0.02 1.57 16 42 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.07 1.34 6.59 -2.39 -0.02 1.32 16 44 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 46 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 47 H 0.05 2.86 6.07 -2.39 -0.01 2.84 16 Total: -1.00 -73.96 358.03 1.52 -72.44 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 0.17 Total: 19.97 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 4.73 Total: 4.14 kcal Atomic # 7 Polarization: -104.14 SS G_CDS: -3.76 Total: -107.90 kcal Atomic # 8 Polarization: -35.68 SS G_CDS: -1.65 Total: -37.33 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -73.96 1.52 -72.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089917519.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.312 kcal (2) G-P(sol) polarization free energy of solvation -73.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds