Wall clock time and date at job start Fri Apr 10 2020 18:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86793 * 120.00426 * 2 1 4 4 H 1.48498 * 109.47600 * 270.00380 * 3 2 1 5 5 H 1.48508 * 109.47312 * 30.00570 * 3 2 1 6 6 H 1.48500 * 109.47251 * 150.00241 * 3 2 1 7 7 C 1.38814 * 119.99492 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99781 * 200.43899 * 7 2 1 9 9 N 1.36939 * 120.00079 * 20.44192 * 7 2 1 10 10 C 1.46921 * 120.62999 * 209.59141 * 9 7 2 11 11 C 1.53192 * 108.77919 * 233.62988 * 10 9 7 12 12 C 1.53041 * 109.31268 * 305.36970 * 11 10 9 13 13 H 1.08995 * 109.45325 * 301.34907 * 12 11 10 14 14 N 1.46499 * 109.45704 * 181.38182 * 12 11 10 15 15 C 1.34778 * 120.00107 * 84.93416 * 14 12 11 16 16 O 1.21611 * 119.99740 * 359.97438 * 15 14 12 17 17 C 1.47095 * 120.00239 * 179.97438 * 15 14 12 18 18 C 1.32998 * 120.00231 * 187.02355 * 17 15 14 19 19 C 1.51266 * 120.84799 * 11.53406 * 18 17 15 20 20 C 1.53671 * 108.31212 * 128.61293 * 19 18 17 21 21 C 1.52958 * 109.32219 * 54.86016 * 20 19 18 22 22 C 1.52961 * 109.81724 * 296.27477 * 21 20 19 23 23 C 1.51268 * 120.85121 * 191.80735 * 18 17 15 24 24 C 1.53040 * 109.53719 * 61.36399 * 12 11 10 25 25 H 1.09000 * 109.49780 * 58.61796 * 24 12 11 26 26 O 1.42899 * 109.49625 * 178.68168 * 24 12 11 27 27 C 1.46926 * 120.63081 * 29.62112 * 9 7 2 28 28 H 0.97007 * 119.99824 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.59030 * 353.42043 * 10 9 7 30 30 H 1.09007 * 109.58102 * 113.70625 * 10 9 7 31 31 H 1.08996 * 109.49973 * 185.41443 * 11 10 9 32 32 H 1.08999 * 109.49237 * 65.31832 * 11 10 9 33 33 H 0.97003 * 120.00040 * 264.93234 * 14 12 11 34 34 H 1.08007 * 120.00168 * 7.02970 * 17 15 14 35 35 H 1.08995 * 109.62875 * 248.38918 * 19 18 17 36 36 H 1.09006 * 109.62800 * 8.95923 * 19 18 17 37 37 H 1.09000 * 109.62304 * 294.83946 * 20 19 18 38 38 H 1.08994 * 109.41486 * 174.75065 * 20 19 18 39 39 H 1.08995 * 109.41313 * 176.16696 * 21 20 19 40 40 H 1.09004 * 109.35209 * 56.34097 * 21 20 19 41 41 H 1.08995 * 109.47983 * 303.61805 * 22 21 20 42 42 H 1.08995 * 109.47682 * 183.58007 * 22 21 20 43 43 H 1.09000 * 109.62797 * 351.04545 * 23 18 17 44 44 H 1.08996 * 109.62435 * 111.42348 * 23 18 17 45 45 H 0.96702 * 114.00267 * 179.97438 * 26 24 12 46 46 H 1.09007 * 109.58604 * 6.57924 * 27 9 7 47 47 H 1.08996 * 109.58505 * 246.15651 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 3.0391 -1.2319 0.3261 9 7 1.3900 -2.3506 -0.4152 10 6 1.7842 -3.6547 0.1347 11 6 2.1182 -4.5984 -1.0249 12 6 0.9309 -4.6556 -1.9889 13 1 0.0459 -5.0011 -1.4546 14 7 1.2340 -5.5827 -3.0819 15 6 1.0087 -6.9026 -2.9281 16 8 0.5542 -7.3240 -1.8818 17 6 1.3125 -7.8335 -4.0258 18 6 0.9623 -9.1128 -3.9290 19 6 0.0320 -9.5815 -2.8321 20 6 -1.1060 -10.3886 -3.4763 21 6 -0.5112 -11.5159 -4.3219 22 6 0.3025 -10.9254 -5.4747 23 6 1.4888 -10.1376 -4.9092 24 6 0.6687 -3.2607 -2.5613 25 1 1.5617 -2.9046 -3.0750 26 8 -0.4204 -3.3211 -3.4845 27 6 0.3183 -2.3020 -1.4191 28 1 -0.4850 0.8401 0.0004 29 1 2.6609 -3.5331 0.7709 30 1 0.9626 -4.0679 0.7198 31 1 2.3191 -5.5964 -0.6355 32 1 2.9976 -4.2293 -1.5525 33 1 1.5968 -5.2467 -3.9164 34 1 1.8201 -7.4780 -4.9104 35 1 0.5801 -10.2111 -2.1313 36 1 -0.3803 -8.7190 -2.3083 37 1 -1.7047 -9.7351 -4.1108 38 1 -1.7359 -10.8138 -2.6950 39 1 -1.3165 -12.1304 -4.7244 40 1 0.1374 -12.1314 -3.6986 41 1 -0.3295 -10.2593 -6.0619 42 1 0.6707 -11.7311 -6.1097 43 1 2.0130 -9.6326 -5.7206 44 1 2.1721 -10.8157 -4.3981 45 1 -0.6427 -2.4703 -3.8868 46 1 0.2277 -1.2878 -1.8081 47 1 -0.6237 -2.6060 -0.9628 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090122503.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:23 Heat of formation + Delta-G solvation = -63.485864 kcal Electronic energy + Delta-G solvation = -26080.872390 eV Core-core repulsion = 22456.688468 eV Total energy + Delta-G solvation = -3624.183923 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.99809 -38.54003 -37.51127 -35.26369 -34.31585 -32.81459 -32.08490 -31.10374 -29.60358 -28.88410 -26.97607 -24.97982 -23.11151 -22.66853 -22.03972 -21.26447 -20.25012 -19.59476 -18.53418 -17.08218 -16.60007 -16.55177 -15.99235 -15.29239 -14.90271 -14.61433 -14.51684 -14.37719 -13.87175 -13.76371 -13.53576 -13.44891 -13.16780 -12.83566 -12.67259 -12.41265 -12.18436 -12.05827 -11.89894 -11.66820 -11.27581 -11.24849 -11.07510 -10.85980 -10.82963 -10.74182 -10.46353 -10.38720 -10.20703 -10.01803 -9.61758 -9.43707 -9.26000 -8.93374 -8.61355 -8.48463 -6.76985 -5.88497 -3.31524 1.39613 3.32309 3.40466 3.41750 3.47212 3.52548 4.41090 4.51385 4.53443 4.61547 4.70441 4.85885 4.99325 5.15467 5.22246 5.26173 5.30144 5.40430 5.41902 5.44848 5.48536 5.62111 5.65515 5.74721 5.82089 5.86992 5.90809 5.92363 6.02397 6.08148 6.14280 6.20040 6.27642 6.44480 6.47125 6.49590 6.71724 6.72900 6.92469 6.95430 7.08236 7.39183 7.73951 7.85730 8.09093 8.36280 8.55575 9.10257 9.73587 10.31589 11.20017 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.036106 B = 0.002708 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.308637 B =10335.663279 C =10429.980401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.006 3.994 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.260 4.260 8 H 0.068 0.932 9 N -0.588 5.588 10 C 0.145 3.855 11 C -0.139 4.139 12 C 0.163 3.837 13 H 0.087 0.913 14 N -0.711 5.711 15 C 0.545 3.455 16 O -0.543 6.543 17 C -0.227 4.227 18 C -0.027 4.027 19 C -0.123 4.123 20 C -0.117 4.117 21 C -0.123 4.123 22 C -0.117 4.117 23 C -0.092 4.092 24 C 0.072 3.928 25 H 0.051 0.949 26 O -0.572 6.572 27 C 0.151 3.849 28 H 0.255 0.745 29 H 0.060 0.940 30 H 0.024 0.976 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.396 0.604 34 H 0.123 0.877 35 H 0.073 0.927 36 H 0.125 0.875 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.375 0.625 46 H 0.085 0.915 47 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.607 -18.180 -12.104 21.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.194 4.194 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.389 4.389 8 H 0.086 0.914 9 N -0.312 5.312 10 C 0.018 3.982 11 C -0.179 4.179 12 C 0.059 3.941 13 H 0.105 0.895 14 N -0.359 5.359 15 C 0.335 3.665 16 O -0.424 6.424 17 C -0.248 4.248 18 C -0.029 4.029 19 C -0.159 4.159 20 C -0.155 4.155 21 C -0.161 4.161 22 C -0.154 4.154 23 C -0.129 4.129 24 C 0.011 3.989 25 H 0.069 0.931 26 O -0.377 6.377 27 C 0.024 3.976 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.042 0.958 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.230 0.770 34 H 0.141 0.859 35 H 0.092 0.908 36 H 0.143 0.857 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.101 0.899 45 H 0.222 0.778 46 H 0.103 0.897 47 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 1.182 -18.932 -11.166 22.012 hybrid contribution 0.669 1.739 -0.727 1.999 sum 1.851 -17.194 -11.893 20.988 Atomic orbital electron populations 1.70087 1.05345 1.25781 1.52774 1.25100 0.95202 0.98671 1.00406 0.86312 0.79315 0.83567 0.77728 1.21389 1.21715 1.20288 1.19173 0.93925 0.85192 1.40653 0.91447 1.43989 1.41876 1.01745 1.43592 1.20943 0.98235 0.86205 0.92795 1.22409 0.97220 1.00240 0.98025 1.20956 0.98757 0.87178 0.87255 0.89455 1.46032 1.65218 1.06509 1.18148 1.18515 0.77676 0.82417 0.87882 1.90587 1.45627 1.76716 1.29490 1.22359 1.08519 0.94109 0.99814 1.22661 0.91683 0.93425 0.95110 1.21717 0.95243 1.03002 0.95955 1.21679 0.97732 0.96935 0.99136 1.21567 0.99392 0.97978 0.97124 1.21564 0.96698 0.99340 0.97808 1.20948 0.97697 0.96798 0.97498 1.22966 0.88527 0.95580 0.91786 0.93061 1.86425 1.53979 1.36220 1.61076 1.21335 0.90913 0.97852 0.87529 0.93489 0.92143 0.95842 0.91779 0.92096 0.77015 0.85912 0.90826 0.85716 0.92055 0.91642 0.92099 0.91930 0.91729 0.91715 0.90959 0.89937 0.77825 0.89674 0.95118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.51 11.55 55.49 0.64 -24.87 16 2 C 0.01 0.16 4.80 -17.43 -0.08 0.07 16 3 Si 0.90 21.11 29.60 -169.99 -5.03 16.08 16 4 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.26 -6.97 9.54 -15.06 -0.14 -7.11 16 8 H 0.07 1.78 7.91 -52.49 -0.42 1.36 16 9 N -0.59 -14.45 2.98 -172.32 -0.51 -14.96 16 10 C 0.14 3.09 6.52 -3.71 -0.02 3.06 16 11 C -0.14 -2.53 5.65 -26.61 -0.15 -2.69 16 12 C 0.16 2.97 2.12 -67.89 -0.14 2.82 16 13 H 0.09 1.84 7.58 -51.93 -0.39 1.44 16 14 N -0.71 -10.91 4.91 -54.95 -0.27 -11.18 16 15 C 0.55 8.54 7.59 -12.67 -0.10 8.44 16 16 O -0.54 -10.10 12.85 5.27 0.07 -10.03 16 17 C -0.23 -2.75 9.66 -37.81 -0.37 -3.12 16 18 C -0.03 -0.30 5.38 -100.61 -0.54 -0.84 16 19 C -0.12 -1.49 5.34 -27.26 -0.15 -1.63 16 20 C -0.12 -1.15 5.95 -26.40 -0.16 -1.31 16 21 C -0.12 -0.97 5.81 -26.77 -0.16 -1.13 16 22 C -0.12 -0.86 5.94 -26.63 -0.16 -1.02 16 23 C -0.09 -0.75 6.04 -27.49 -0.17 -0.92 16 24 C 0.07 1.35 3.14 -26.61 -0.08 1.27 16 25 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 26 O -0.57 -9.80 13.16 -35.23 -0.46 -10.27 16 27 C 0.15 3.48 4.95 -3.71 -0.02 3.47 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.06 1.25 7.93 -51.93 -0.41 0.83 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.40 5.16 8.59 -40.82 -0.35 4.81 16 34 H 0.12 1.18 7.96 -52.48 -0.42 0.76 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.13 1.91 4.74 -53.12 -0.25 1.66 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.51 7.92 -51.93 -0.41 0.10 16 44 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.38 5.12 9.08 45.56 0.41 5.53 16 46 H 0.09 2.13 6.30 -51.93 -0.33 1.80 16 47 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 366.95 15.07 5.53 5.53 Total: -1.00 -30.95 366.95 -9.67 -40.62 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -7.20 Total: 9.72 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -2.43 Total: -0.63 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: -0.14 Total: -51.01 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.40 Total: -20.30 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.95 -9.67 -40.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090122503.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.867 kcal (2) G-P(sol) polarization free energy of solvation -30.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds