Wall clock time and date at job start Fri Apr 10 2020 18:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00245 * 2 1 4 4 H 1.48500 * 109.46961 * 269.49190 * 3 2 1 5 5 H 1.48506 * 109.47004 * 29.49012 * 3 2 1 6 6 H 1.48495 * 109.47231 * 149.49233 * 3 2 1 7 7 C 1.38810 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00230 * 342.71057 * 7 2 1 9 9 N 1.36938 * 120.00179 * 162.70739 * 7 2 1 10 10 C 1.46930 * 120.63240 * 147.24853 * 9 7 2 11 11 C 1.53191 * 108.77812 * 126.41253 * 10 9 7 12 12 C 1.53044 * 109.31149 * 54.63152 * 11 10 9 13 13 H 1.09005 * 109.45686 * 58.64456 * 12 11 10 14 14 N 1.46498 * 109.45616 * 178.61509 * 12 11 10 15 15 C 1.34783 * 120.00095 * 274.75258 * 14 12 11 16 16 O 1.21615 * 119.99654 * 0.27795 * 15 14 12 17 17 C 1.47097 * 119.99903 * 180.28198 * 15 14 12 18 18 C 1.32999 * 119.99799 * 187.33804 * 17 15 14 19 19 C 1.51270 * 120.84775 * 15.55489 * 18 17 15 20 20 C 1.53662 * 108.31057 * 128.62007 * 19 18 17 21 21 C 1.52967 * 109.32377 * 54.85607 * 20 19 18 22 22 C 1.52954 * 109.81882 * 296.27620 * 21 20 19 23 23 C 1.51268 * 120.84890 * 195.83481 * 18 17 15 24 24 C 1.53040 * 109.52930 * 298.63136 * 12 11 10 25 25 H 1.09005 * 109.49515 * 181.32479 * 24 12 11 26 26 O 1.42905 * 109.49675 * 301.41889 * 24 12 11 27 27 C 1.46921 * 120.62887 * 327.26589 * 9 7 2 28 28 H 0.96998 * 119.99734 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.58433 * 6.62333 * 10 9 7 30 30 H 1.08995 * 109.70040 * 246.26859 * 10 9 7 31 31 H 1.09003 * 109.49501 * 294.68245 * 11 10 9 32 32 H 1.08997 * 109.50032 * 174.58699 * 11 10 9 33 33 H 0.96996 * 119.99870 * 95.03567 * 14 12 11 34 34 H 1.07999 * 120.00545 * 7.33144 * 17 15 14 35 35 H 1.09007 * 109.62329 * 248.38827 * 19 18 17 36 36 H 1.09004 * 109.62788 * 8.96077 * 19 18 17 37 37 H 1.08996 * 109.62745 * 294.84234 * 20 19 18 38 38 H 1.08994 * 109.41770 * 174.74844 * 20 19 18 39 39 H 1.08994 * 109.40903 * 176.16773 * 21 20 19 40 40 H 1.08997 * 109.35469 * 56.34705 * 21 20 19 41 41 H 1.09009 * 109.47855 * 303.61814 * 22 21 20 42 42 H 1.08995 * 109.48370 * 183.57899 * 22 21 20 43 43 H 1.08999 * 109.62925 * 351.04290 * 23 18 17 44 44 H 1.09001 * 109.62514 * 111.60909 * 23 18 17 45 45 H 0.96694 * 114.00175 * 179.97438 * 26 24 12 46 46 H 1.09002 * 109.58946 * 353.37445 * 27 9 7 47 47 H 1.09007 * 109.58459 * 113.66104 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5085 2.0401 -1.4000 5 1 1.4423 2.6558 0.6892 6 1 3.5423 1.4433 0.7107 7 6 2.0102 -1.2021 0.0005 8 1 1.5069 -2.1162 0.2789 9 7 3.3332 -1.2291 -0.3520 10 6 4.2533 -2.1931 0.2668 11 6 4.9692 -2.9725 -0.8408 12 6 5.6422 -1.9871 -1.7991 13 1 6.3487 -1.3680 -1.2462 14 7 6.3555 -2.7299 -2.8412 15 6 7.6117 -3.1646 -2.6188 16 8 8.1512 -2.9447 -1.5513 17 6 8.3301 -3.9050 -3.6674 18 6 9.5091 -4.4598 -3.4007 19 6 9.9712 -4.6510 -1.9731 20 6 10.4037 -6.1151 -1.7976 21 6 11.4562 -6.4618 -2.8521 22 6 10.8433 -6.3595 -4.2497 23 6 10.4249 -4.9100 -4.5174 24 6 4.5796 -1.0952 -2.4453 25 1 5.0570 -0.4094 -3.1453 26 8 3.6343 -1.9086 -3.1432 27 6 3.8596 -0.2944 -1.3559 28 1 -0.4850 0.8400 -0.0004 29 1 3.6907 -2.8840 0.8947 30 1 4.9874 -1.6630 0.8736 31 1 4.2444 -3.5750 -1.3884 32 1 5.7237 -3.6230 -0.3987 33 1 5.9251 -2.9051 -3.6926 34 1 7.9003 -3.9982 -4.6537 35 1 10.8141 -3.9904 -1.7695 36 1 9.1523 -4.4255 -1.2898 37 1 9.5399 -6.7689 -1.9176 38 1 10.8274 -6.2510 -0.8027 39 1 11.8135 -7.4781 -2.6867 40 1 12.2915 -5.7663 -2.7710 41 1 9.9690 -7.0076 -4.3116 42 1 11.5785 -6.6687 -4.9926 43 1 9.8977 -4.8509 -5.4695 44 1 11.3089 -4.2729 -4.5451 45 1 2.9302 -1.4083 -3.5779 46 1 3.0372 0.2675 -1.7987 47 1 4.5595 0.3942 -0.8824 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090122504.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:26 Heat of formation + Delta-G solvation = -57.960635 kcal Electronic energy + Delta-G solvation = -26274.609637 eV Core-core repulsion = 22650.665306 eV Total energy + Delta-G solvation = -3623.944331 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.10578 -38.73363 -37.71609 -34.98659 -34.40234 -32.88839 -32.06967 -31.19180 -30.15774 -29.38247 -27.08058 -24.91345 -23.18207 -22.97814 -22.14313 -21.33083 -20.33937 -19.71153 -18.60884 -17.38523 -16.74613 -16.39591 -15.67019 -15.51355 -15.00691 -14.86426 -14.60202 -14.31417 -14.20576 -14.08282 -13.68888 -13.63130 -13.20273 -12.81013 -12.69973 -12.61508 -12.42842 -12.32345 -12.10063 -11.67488 -11.44366 -11.35558 -11.12982 -10.96242 -10.89704 -10.61559 -10.53857 -10.46367 -10.28183 -10.05781 -9.56328 -9.43202 -9.37170 -9.04640 -8.65432 -8.61719 -6.89963 -5.97066 -3.37407 1.28001 3.24731 3.35903 3.40149 3.45082 3.48321 4.44996 4.46486 4.48549 4.62855 4.64671 4.77772 4.91585 4.96399 5.08637 5.15352 5.16273 5.25274 5.32627 5.33355 5.37677 5.38441 5.59245 5.65259 5.68300 5.74819 5.76704 5.81157 5.84365 6.01192 6.05415 6.10861 6.15606 6.27742 6.31634 6.39031 6.41037 6.51796 6.57230 6.68699 6.82535 6.99997 7.76463 7.96449 8.12215 8.34491 8.43483 8.92642 9.68950 10.08965 11.19157 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.034251 B = 0.002912 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.303839 B = 9613.180316 C = 9793.981434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.024 3.976 3 Si 0.883 3.117 4 H -0.289 1.289 5 H -0.302 1.302 6 H -0.271 1.271 7 C -0.253 4.253 8 H 0.084 0.916 9 N -0.596 5.596 10 C 0.150 3.850 11 C -0.137 4.137 12 C 0.162 3.838 13 H 0.091 0.909 14 N -0.715 5.715 15 C 0.544 3.456 16 O -0.545 6.545 17 C -0.230 4.230 18 C -0.025 4.025 19 C -0.113 4.113 20 C -0.118 4.118 21 C -0.123 4.123 22 C -0.117 4.117 23 C -0.092 4.092 24 C 0.082 3.918 25 H 0.047 0.953 26 O -0.553 6.553 27 C 0.098 3.902 28 H 0.262 0.738 29 H 0.066 0.934 30 H 0.024 0.976 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.402 0.598 34 H 0.125 0.875 35 H 0.074 0.926 36 H 0.115 0.885 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.378 0.622 46 H 0.079 0.921 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.677 -9.636 -10.741 25.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.175 4.175 3 Si 0.713 3.287 4 H -0.217 1.217 5 H -0.230 1.230 6 H -0.196 1.196 7 C -0.382 4.382 8 H 0.101 0.899 9 N -0.319 5.319 10 C 0.024 3.976 11 C -0.177 4.177 12 C 0.058 3.942 13 H 0.109 0.891 14 N -0.364 5.364 15 C 0.333 3.667 16 O -0.425 6.425 17 C -0.251 4.251 18 C -0.027 4.027 19 C -0.149 4.149 20 C -0.155 4.155 21 C -0.161 4.161 22 C -0.155 4.155 23 C -0.130 4.130 24 C 0.021 3.979 25 H 0.065 0.935 26 O -0.359 6.359 27 C -0.029 4.029 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.237 0.763 34 H 0.142 0.858 35 H 0.093 0.907 36 H 0.132 0.868 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.102 0.898 45 H 0.225 0.775 46 H 0.097 0.903 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 21.242 -9.859 -9.721 25.356 hybrid contribution -0.245 1.459 -0.830 1.696 sum 20.998 -8.400 -10.551 24.956 Atomic orbital electron populations 1.69806 1.05704 1.26506 1.53240 1.25410 0.95246 0.97521 0.99289 0.86946 0.79973 0.84612 0.77152 1.21711 1.22994 1.19558 1.18893 0.83350 0.94221 1.41701 0.89869 1.44180 1.06654 1.38946 1.42157 1.20937 0.92060 0.91770 0.92817 1.22295 0.99347 0.98290 0.97770 1.20945 0.91658 0.93201 0.88445 0.89120 1.46085 1.14417 1.56925 1.18973 1.18566 0.81208 0.79662 0.87238 1.90660 1.67502 1.57717 1.26662 1.22362 0.97437 1.05403 0.99871 1.22674 0.92880 0.90310 0.96809 1.21512 1.03761 0.95705 0.93931 1.21687 0.98653 0.96408 0.98795 1.21564 0.98441 1.01379 0.94684 1.21579 1.00834 0.95884 0.97204 1.20966 0.98698 0.97021 0.96269 1.22552 0.89532 0.92032 0.93802 0.93514 1.86389 1.41276 1.37154 1.71061 1.22057 0.97561 0.92736 0.90499 0.92759 0.91519 0.95816 0.90849 0.92475 0.76318 0.85760 0.90723 0.86758 0.91982 0.91546 0.92009 0.91896 0.91692 0.91659 0.90857 0.89815 0.77501 0.90279 0.95000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.53 13.97 55.49 0.78 -26.75 16 2 C 0.02 0.69 5.25 -17.43 -0.09 0.60 16 3 Si 0.88 21.99 24.37 -169.99 -4.14 17.85 16 4 H -0.29 -6.81 6.58 56.52 0.37 -6.44 16 5 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 6 H -0.27 -6.71 6.79 56.52 0.38 -6.32 16 7 C -0.25 -7.00 10.00 -15.06 -0.15 -7.15 16 8 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 9 N -0.60 -14.03 2.64 -172.32 -0.45 -14.48 16 10 C 0.15 3.10 6.52 -3.71 -0.02 3.08 16 11 C -0.14 -2.49 5.51 -26.61 -0.15 -2.63 16 12 C 0.16 2.72 2.20 -67.89 -0.15 2.57 16 13 H 0.09 1.63 7.57 -51.93 -0.39 1.24 16 14 N -0.71 -10.18 5.05 -54.94 -0.28 -10.45 16 15 C 0.54 7.87 7.54 -12.66 -0.10 7.77 16 16 O -0.54 -9.42 13.04 5.26 0.07 -9.35 16 17 C -0.23 -2.58 9.64 -37.81 -0.36 -2.94 16 18 C -0.02 -0.26 5.36 -100.61 -0.54 -0.80 16 19 C -0.11 -1.25 5.23 -27.26 -0.14 -1.40 16 20 C -0.12 -1.05 5.95 -26.40 -0.16 -1.21 16 21 C -0.12 -0.89 5.81 -26.77 -0.16 -1.04 16 22 C -0.12 -0.80 5.94 -26.64 -0.16 -0.95 16 23 C -0.09 -0.69 6.04 -27.49 -0.17 -0.86 16 24 C 0.08 1.40 3.38 -26.61 -0.09 1.31 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 O -0.55 -9.38 12.09 -35.23 -0.43 -9.81 16 27 C 0.10 2.06 3.85 -3.71 -0.01 2.05 16 28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.07 1.38 7.93 -51.93 -0.41 0.96 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 1.43 7.61 -51.93 -0.40 1.04 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.40 5.03 8.24 -40.82 -0.34 4.70 16 34 H 0.12 1.10 7.98 -52.49 -0.42 0.68 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.11 1.61 5.06 -51.94 -0.26 1.35 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 42 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.48 7.94 -51.93 -0.41 0.06 16 44 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.38 5.55 9.08 45.56 0.41 5.96 16 46 H 0.08 1.76 4.91 -51.93 -0.26 1.51 16 47 H 0.03 0.67 7.05 -51.93 -0.37 0.31 16 LS Contribution 359.15 15.07 5.41 5.41 Total: -1.00 -31.86 359.15 -8.58 -40.44 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -7.09 Total: 8.74 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -2.45 Total: -1.61 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: 0.04 Total: -51.69 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.36 Total: -19.15 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.14 Total: 17.85 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.86 -8.58 -40.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090122504.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.516 kcal (2) G-P(sol) polarization free energy of solvation -31.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds