Wall clock time and date at job start Fri Apr 10 2020 18:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00245 * 2 1 4 4 H 1.48500 * 109.46961 * 269.49190 * 3 2 1 5 5 H 1.48506 * 109.47004 * 29.49012 * 3 2 1 6 6 H 1.48495 * 109.47231 * 149.49233 * 3 2 1 7 7 C 1.38810 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00230 * 342.71057 * 7 2 1 9 9 N 1.36938 * 120.00179 * 162.70739 * 7 2 1 10 10 C 1.46930 * 120.63240 * 147.24853 * 9 7 2 11 11 C 1.53191 * 108.77812 * 126.41253 * 10 9 7 12 12 C 1.53044 * 109.31149 * 54.63152 * 11 10 9 13 13 H 1.09005 * 109.45686 * 58.64456 * 12 11 10 14 14 N 1.46498 * 109.45616 * 178.61509 * 12 11 10 15 15 C 1.34783 * 120.00095 * 274.75258 * 14 12 11 16 16 O 1.21615 * 119.99654 * 0.27795 * 15 14 12 17 17 C 1.47097 * 119.99903 * 180.28198 * 15 14 12 18 18 C 1.32999 * 119.99799 * 187.33804 * 17 15 14 19 19 C 1.51270 * 120.84775 * 15.55489 * 18 17 15 20 20 C 1.53662 * 108.31057 * 128.62007 * 19 18 17 21 21 C 1.52967 * 109.32377 * 54.85607 * 20 19 18 22 22 C 1.52954 * 109.81882 * 296.27620 * 21 20 19 23 23 C 1.51268 * 120.84890 * 195.83481 * 18 17 15 24 24 C 1.53040 * 109.52930 * 298.63136 * 12 11 10 25 25 H 1.09005 * 109.49515 * 181.32479 * 24 12 11 26 26 O 1.42905 * 109.49675 * 301.41889 * 24 12 11 27 27 C 1.46921 * 120.62887 * 327.26589 * 9 7 2 28 28 H 0.96998 * 119.99734 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.58433 * 6.62333 * 10 9 7 30 30 H 1.08995 * 109.70040 * 246.26859 * 10 9 7 31 31 H 1.09003 * 109.49501 * 294.68245 * 11 10 9 32 32 H 1.08997 * 109.50032 * 174.58699 * 11 10 9 33 33 H 0.96996 * 119.99870 * 95.03567 * 14 12 11 34 34 H 1.07999 * 120.00545 * 7.33144 * 17 15 14 35 35 H 1.09007 * 109.62329 * 248.38827 * 19 18 17 36 36 H 1.09004 * 109.62788 * 8.96077 * 19 18 17 37 37 H 1.08996 * 109.62745 * 294.84234 * 20 19 18 38 38 H 1.08994 * 109.41770 * 174.74844 * 20 19 18 39 39 H 1.08994 * 109.40903 * 176.16773 * 21 20 19 40 40 H 1.08997 * 109.35469 * 56.34705 * 21 20 19 41 41 H 1.09009 * 109.47855 * 303.61814 * 22 21 20 42 42 H 1.08995 * 109.48370 * 183.57899 * 22 21 20 43 43 H 1.08999 * 109.62925 * 351.04290 * 23 18 17 44 44 H 1.09001 * 109.62514 * 111.60909 * 23 18 17 45 45 H 0.96694 * 114.00175 * 179.97438 * 26 24 12 46 46 H 1.09002 * 109.58946 * 353.37445 * 27 9 7 47 47 H 1.09007 * 109.58459 * 113.66104 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5085 2.0401 -1.4000 5 1 1.4423 2.6558 0.6892 6 1 3.5423 1.4433 0.7107 7 6 2.0102 -1.2021 0.0005 8 1 1.5069 -2.1162 0.2789 9 7 3.3332 -1.2291 -0.3520 10 6 4.2533 -2.1931 0.2668 11 6 4.9692 -2.9725 -0.8408 12 6 5.6422 -1.9871 -1.7991 13 1 6.3487 -1.3680 -1.2462 14 7 6.3555 -2.7299 -2.8412 15 6 7.6117 -3.1646 -2.6188 16 8 8.1512 -2.9447 -1.5513 17 6 8.3301 -3.9050 -3.6674 18 6 9.5091 -4.4598 -3.4007 19 6 9.9712 -4.6510 -1.9731 20 6 10.4037 -6.1151 -1.7976 21 6 11.4562 -6.4618 -2.8521 22 6 10.8433 -6.3595 -4.2497 23 6 10.4249 -4.9100 -4.5174 24 6 4.5796 -1.0952 -2.4453 25 1 5.0570 -0.4094 -3.1453 26 8 3.6343 -1.9086 -3.1432 27 6 3.8596 -0.2944 -1.3559 28 1 -0.4850 0.8400 -0.0004 29 1 3.6907 -2.8840 0.8947 30 1 4.9874 -1.6630 0.8736 31 1 4.2444 -3.5750 -1.3884 32 1 5.7237 -3.6230 -0.3987 33 1 5.9251 -2.9051 -3.6926 34 1 7.9003 -3.9982 -4.6537 35 1 10.8141 -3.9904 -1.7695 36 1 9.1523 -4.4255 -1.2898 37 1 9.5399 -6.7689 -1.9176 38 1 10.8274 -6.2510 -0.8027 39 1 11.8135 -7.4781 -2.6867 40 1 12.2915 -5.7663 -2.7710 41 1 9.9690 -7.0076 -4.3116 42 1 11.5785 -6.6687 -4.9926 43 1 9.8977 -4.8509 -5.4695 44 1 11.3089 -4.2729 -4.5451 45 1 2.9302 -1.4083 -3.5779 46 1 3.0372 0.2675 -1.7987 47 1 4.5595 0.3942 -0.8824 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090122504.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:26 Heat of formation + Delta-G solvation = -80.922964 kcal Electronic energy + Delta-G solvation = -26275.605358 eV Core-core repulsion = 22650.665306 eV Total energy + Delta-G solvation = -3624.940052 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.26427 -39.95012 -38.70960 -36.61975 -35.72876 -34.08273 -33.60291 -31.87093 -31.81829 -30.90097 -28.09843 -26.55847 -24.59814 -23.87532 -23.55031 -22.44961 -21.32636 -21.13019 -19.63918 -19.09743 -17.88888 -17.68927 -17.28137 -16.85902 -16.16185 -16.04492 -15.85254 -15.69770 -15.33435 -15.15839 -14.97529 -14.58260 -14.49103 -14.32955 -14.12607 -13.95480 -13.54430 -13.46368 -13.18049 -13.02522 -12.79709 -12.67649 -12.40291 -12.22049 -12.05777 -11.96110 -11.86974 -11.75943 -11.59158 -11.43521 -11.17541 -10.91486 -10.69378 -10.43768 -10.03192 -9.75711 -8.85621 -8.16718 -5.54494 0.39667 1.26724 1.42019 1.50785 2.25835 2.32938 2.39952 3.02621 3.27097 3.38662 3.70757 3.75930 3.80229 3.94756 4.05313 4.07630 4.13257 4.20731 4.25454 4.35355 4.48101 4.51516 4.51650 4.63490 4.65110 4.71838 4.74859 4.79082 4.82078 4.97948 5.01134 5.02045 5.05481 5.15312 5.19231 5.19539 5.34157 5.40328 5.45383 5.55727 5.63046 5.73665 5.88863 6.13858 6.68431 6.82487 6.93993 7.34190 7.58637 8.01670 9.03435 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.034251 B = 0.002912 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.303839 B = 9613.180316 C = 9793.981434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.028 4.028 3 Si 0.947 3.053 4 H -0.263 1.263 5 H -0.311 1.311 6 H -0.268 1.268 7 C -0.244 4.244 8 H 0.043 0.957 9 N -0.608 5.608 10 C 0.147 3.853 11 C -0.122 4.122 12 C 0.167 3.833 13 H 0.083 0.917 14 N -0.707 5.707 15 C 0.538 3.462 16 O -0.578 6.578 17 C -0.243 4.243 18 C -0.017 4.017 19 C -0.116 4.116 20 C -0.116 4.116 21 C -0.121 4.121 22 C -0.116 4.116 23 C -0.090 4.090 24 C 0.095 3.905 25 H 0.082 0.918 26 O -0.561 6.561 27 C 0.091 3.909 28 H 0.262 0.738 29 H 0.055 0.945 30 H 0.031 0.969 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.413 0.587 34 H 0.153 0.847 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.388 0.612 46 H 0.067 0.933 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.536 -9.659 -13.202 28.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.224 4.224 3 Si 0.775 3.225 4 H -0.189 1.189 5 H -0.240 1.240 6 H -0.192 1.192 7 C -0.374 4.374 8 H 0.061 0.939 9 N -0.332 5.332 10 C 0.021 3.979 11 C -0.162 4.162 12 C 0.061 3.939 13 H 0.101 0.899 14 N -0.357 5.357 15 C 0.330 3.670 16 O -0.461 6.461 17 C -0.264 4.264 18 C -0.019 4.019 19 C -0.153 4.153 20 C -0.153 4.153 21 C -0.159 4.159 22 C -0.153 4.153 23 C -0.127 4.127 24 C 0.034 3.966 25 H 0.099 0.901 26 O -0.368 6.368 27 C -0.035 4.035 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.249 0.751 34 H 0.170 0.830 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.103 0.897 43 H 0.108 0.892 44 H 0.112 0.888 45 H 0.237 0.763 46 H 0.086 0.914 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 24.135 -9.900 -12.232 28.812 hybrid contribution -1.095 1.343 0.008 1.733 sum 23.040 -8.556 -12.224 27.449 Atomic orbital electron populations 1.69941 1.07440 1.27289 1.55569 1.25995 0.95805 1.00856 0.99695 0.85902 0.78261 0.79906 0.78393 1.18855 1.24012 1.19236 1.18731 0.85052 0.92877 1.40765 0.93879 1.44235 1.05536 1.39945 1.43510 1.21016 0.91737 0.91419 0.93690 1.22075 0.98779 0.98134 0.97177 1.20695 0.91528 0.92832 0.88803 0.89944 1.45907 1.14376 1.56665 1.18732 1.19145 0.81009 0.79370 0.87476 1.90664 1.68204 1.58997 1.28275 1.22397 0.97712 1.06216 1.00037 1.22984 0.92828 0.88886 0.97166 1.21438 1.02515 0.97135 0.94210 1.21666 0.99122 0.94706 0.99820 1.21564 0.97821 1.02152 0.94350 1.21593 1.01229 0.95264 0.97253 1.21049 0.98457 0.97532 0.95632 1.22389 0.89170 0.92019 0.93065 0.90067 1.86371 1.41782 1.37690 1.70968 1.22179 0.97542 0.92811 0.90988 0.92849 0.92634 0.95073 0.92224 0.92114 0.75050 0.82991 0.90973 0.89964 0.92594 0.91450 0.90858 0.91458 0.92002 0.89664 0.89185 0.88766 0.76273 0.91446 0.94320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.42 13.97 21.65 0.30 -59.11 16 2 C -0.03 -1.64 5.25 84.86 0.45 -1.19 16 3 Si 0.95 45.43 24.37 68.60 1.67 47.10 16 4 H -0.26 -11.38 6.58 99.48 0.65 -10.73 16 5 H -0.31 -15.34 7.11 99.48 0.71 -14.64 16 6 H -0.27 -12.58 6.79 99.48 0.68 -11.90 16 7 C -0.24 -13.88 10.00 84.03 0.84 -13.03 16 8 H 0.04 2.74 8.06 -2.91 -0.02 2.72 16 9 N -0.61 -28.62 2.64 -699.09 -1.84 -30.46 16 10 C 0.15 6.10 6.52 86.36 0.56 6.66 16 11 C -0.12 -4.38 5.51 30.67 0.17 -4.21 16 12 C 0.17 5.35 2.20 45.02 0.10 5.45 16 13 H 0.08 2.84 7.57 -2.38 -0.02 2.82 16 14 N -0.71 -18.80 5.05 -445.99 -2.25 -21.05 16 15 C 0.54 14.89 7.54 86.57 0.65 15.55 16 16 O -0.58 -19.88 13.04 -4.08 -0.05 -19.93 16 17 C -0.24 -4.91 9.64 23.43 0.23 -4.69 16 18 C -0.02 -0.31 5.36 -17.25 -0.09 -0.40 16 19 C -0.12 -2.51 5.23 30.25 0.16 -2.35 16 20 C -0.12 -1.93 5.95 30.81 0.18 -1.75 16 21 C -0.12 -1.44 5.81 30.57 0.18 -1.26 16 22 C -0.12 -1.18 5.94 30.65 0.18 -1.00 16 23 C -0.09 -1.04 6.04 30.10 0.18 -0.86 16 24 C 0.09 3.01 3.38 30.67 0.10 3.11 16 25 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 26 O -0.56 -17.94 12.09 -148.98 -1.80 -19.74 16 27 C 0.09 3.64 3.85 86.36 0.33 3.97 16 28 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 29 H 0.06 2.37 7.93 -2.39 -0.02 2.35 16 30 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 2.31 7.61 -2.39 -0.02 2.29 16 32 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.41 9.26 8.24 -92.71 -0.76 8.50 16 34 H 0.15 2.17 7.98 -2.91 -0.02 2.14 16 35 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.08 2.36 5.06 -2.63 -0.01 2.35 16 37 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 42 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.09 0.79 7.94 -2.39 -0.02 0.77 16 44 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.39 10.66 9.08 -74.06 -0.67 9.99 16 46 H 0.07 2.86 4.91 -2.39 -0.01 2.85 16 47 H 0.04 1.52 7.05 -2.38 -0.02 1.51 16 Total: -1.00 -70.56 359.15 -0.30 -70.86 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: -0.55 Total: 28.34 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: 4.22 Total: 4.00 kcal Atomic # 7 Polarization: -106.83 SS G_CDS: -3.79 Total: -110.62 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -1.85 Total: -39.67 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.67 Total: 47.10 kcal Total: -70.56 -0.30 -70.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090122504.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.066 kcal (2) G-P(sol) polarization free energy of solvation -70.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds