Wall clock time and date at job start Fri Apr 10 2020 18:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86794 * 119.99885 * 2 1 4 4 H 1.48494 * 109.47216 * 239.99584 * 3 2 1 5 5 H 1.48497 * 109.47162 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47215 * 119.99576 * 3 2 1 7 7 C 1.38814 * 119.99618 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99511 * 198.40403 * 7 2 1 9 9 N 1.36928 * 120.00576 * 18.40589 * 7 2 1 10 10 C 1.46935 * 120.62819 * 25.84491 * 9 7 2 11 11 C 1.53189 * 108.77475 * 126.37210 * 10 9 7 12 12 C 1.53040 * 109.31434 * 54.63123 * 11 10 9 13 13 H 1.08997 * 109.46281 * 178.62454 * 12 11 10 14 14 N 1.46506 * 109.46013 * 58.65649 * 12 11 10 15 15 C 1.34777 * 119.99957 * 84.99481 * 14 12 11 16 16 O 1.21617 * 120.00155 * 0.02562 * 15 14 12 17 17 C 1.47105 * 120.00201 * 180.02562 * 15 14 12 18 18 C 1.32984 * 120.00050 * 174.04396 * 17 15 14 19 19 C 1.51273 * 120.84794 * 164.06853 * 18 17 15 20 20 C 1.53234 * 108.53275 * 128.63226 * 19 18 17 21 21 C 1.52960 * 109.41740 * 54.62577 * 20 19 18 22 22 C 1.52962 * 109.81235 * 296.41723 * 21 20 19 23 23 C 1.51274 * 120.85394 * 344.04966 * 18 17 15 24 24 C 1.53039 * 109.54198 * 298.63946 * 12 11 10 25 25 H 1.09005 * 109.49334 * 301.41003 * 24 12 11 26 26 O 1.42898 * 109.49964 * 181.31476 * 24 12 11 27 27 C 1.46926 * 120.63611 * 205.82404 * 9 7 2 28 28 H 0.96994 * 119.99881 * 0.02562 * 1 2 3 29 29 H 1.08992 * 109.58675 * 6.58414 * 10 9 7 30 30 H 1.09001 * 109.58244 * 246.15832 * 10 9 7 31 31 H 1.09001 * 109.49647 * 294.68480 * 11 10 9 32 32 H 1.08998 * 109.50049 * 174.58377 * 11 10 9 33 33 H 0.97001 * 120.00156 * 265.00163 * 14 12 11 34 34 H 1.08000 * 119.99867 * 354.04841 * 17 15 14 35 35 H 1.08992 * 109.62728 * 8.92257 * 19 18 17 36 36 H 1.08996 * 109.78261 * 248.43856 * 19 18 17 37 37 H 1.09006 * 109.47838 * 174.60652 * 20 19 18 38 38 H 1.09000 * 109.48745 * 294.63116 * 20 19 18 39 39 H 1.08995 * 109.41712 * 56.50916 * 21 20 19 40 40 H 1.08995 * 109.41360 * 176.30611 * 21 20 19 41 41 H 1.09002 * 109.47399 * 303.59805 * 22 21 20 42 42 H 1.09009 * 109.48886 * 183.57030 * 22 21 20 43 43 H 1.09001 * 109.62191 * 351.08369 * 23 18 17 44 44 H 1.08991 * 109.62571 * 111.46018 * 23 18 17 45 45 H 0.96704 * 113.99910 * 179.97438 * 26 24 12 46 46 H 1.09003 * 109.57998 * 353.42036 * 27 9 7 47 47 H 1.08994 * 109.58909 * 113.69639 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0488 -1.2260 0.2959 9 7 1.3782 -2.3579 -0.3733 10 6 0.2231 -2.3196 -1.2807 11 6 0.4914 -3.2592 -2.4605 12 6 0.8279 -4.6546 -1.9298 13 1 0.9954 -5.3312 -2.7677 14 7 -0.2866 -5.1499 -1.1180 15 6 -1.3289 -5.7669 -1.7091 16 8 -1.3440 -5.9129 -2.9164 17 6 -2.4482 -6.2637 -0.8941 18 6 -3.5292 -6.7652 -1.4843 19 6 -4.5232 -7.5972 -0.7045 20 6 -5.9258 -7.0261 -0.9381 21 6 -6.2031 -6.9575 -2.4408 22 6 -5.2256 -5.9860 -3.1046 23 6 -3.7967 -6.5180 -2.9525 24 6 2.0925 -4.5845 -1.0707 25 1 2.9163 -4.1928 -1.6675 26 8 2.4231 -5.8929 -0.6008 27 6 1.8423 -3.6599 0.1247 28 1 -0.4850 0.8400 -0.0004 29 1 0.0806 -1.3033 -1.6480 30 1 -0.6703 -2.6467 -0.7488 31 1 1.3303 -2.8800 -3.0440 32 1 -0.3959 -3.3140 -3.0911 33 1 -0.2744 -5.0336 -0.1550 34 1 -2.3921 -6.2210 0.1836 35 1 -4.2829 -7.5544 0.3578 36 1 -4.4874 -8.6314 -1.0466 37 1 -6.6647 -7.6702 -0.4612 38 1 -5.9866 -6.0251 -0.5111 39 1 -6.0811 -7.9487 -2.8774 40 1 -7.2241 -6.6132 -2.6055 41 1 -5.3028 -5.0095 -2.6265 42 1 -5.4681 -5.8928 -4.1632 43 1 -3.0894 -5.7819 -3.3346 44 1 -3.6893 -7.4506 -3.5063 45 1 3.2164 -5.9237 -0.0486 46 1 2.7681 -3.5279 0.6847 47 1 1.0820 -4.0952 0.7732 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090122505.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:30 Heat of formation + Delta-G solvation = -60.438192 kcal Electronic energy + Delta-G solvation = -26570.610682 eV Core-core repulsion = 22946.558916 eV Total energy + Delta-G solvation = -3624.051766 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.95624 -38.59484 -37.42251 -35.42684 -34.00312 -32.67090 -31.67492 -31.02122 -30.16778 -28.63774 -26.77364 -25.23953 -22.99512 -22.49002 -22.08135 -21.55586 -20.43993 -18.73701 -18.51457 -17.07823 -16.76088 -16.45457 -15.66464 -14.98140 -14.86881 -14.77401 -14.47454 -14.17993 -14.09955 -13.75166 -13.57211 -13.44800 -13.13820 -12.70175 -12.61854 -12.30773 -12.25533 -12.02146 -11.83980 -11.64024 -11.19179 -11.15540 -10.95669 -10.87996 -10.71571 -10.58597 -10.40237 -10.35373 -10.17777 -9.93933 -9.79502 -9.42255 -9.16382 -8.81278 -8.52757 -8.41320 -6.80129 -5.86861 -3.29116 1.51897 3.33822 3.40588 3.41275 3.63992 3.67625 4.37148 4.53378 4.64534 4.67317 4.81475 4.98376 5.11696 5.26985 5.28183 5.34048 5.34823 5.44027 5.50201 5.51996 5.56447 5.61161 5.71852 5.76070 5.86708 5.93248 5.97009 6.01038 6.02111 6.09486 6.24764 6.28123 6.33772 6.46271 6.55484 6.60509 6.66216 6.72096 6.80313 7.05920 7.29774 7.60559 7.71136 7.93140 8.02007 8.34704 8.69635 9.11049 9.74019 10.28518 11.21072 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.016890 B = 0.003597 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.342711 B = 7783.270324 C = 8700.608714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.005 3.995 3 Si 0.904 3.096 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.259 4.259 8 H 0.067 0.933 9 N -0.587 5.587 10 C 0.170 3.830 11 C -0.152 4.152 12 C 0.166 3.834 13 H 0.078 0.922 14 N -0.700 5.700 15 C 0.547 3.453 16 O -0.552 6.552 17 C -0.223 4.223 18 C -0.030 4.030 19 C -0.091 4.091 20 C -0.118 4.118 21 C -0.122 4.122 22 C -0.118 4.118 23 C -0.112 4.112 24 C 0.075 3.925 25 H 0.065 0.935 26 O -0.571 6.571 27 C 0.119 3.881 28 H 0.255 0.745 29 H 0.092 0.908 30 H 0.021 0.979 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.401 0.599 34 H 0.124 0.876 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.116 0.884 44 H 0.072 0.928 45 H 0.373 0.627 46 H 0.058 0.942 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.257 -13.875 -1.697 15.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.194 4.194 3 Si 0.734 3.266 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.389 4.389 8 H 0.084 0.916 9 N -0.311 5.311 10 C 0.045 3.955 11 C -0.192 4.192 12 C 0.061 3.939 13 H 0.096 0.904 14 N -0.350 5.350 15 C 0.337 3.663 16 O -0.434 6.434 17 C -0.244 4.244 18 C -0.032 4.032 19 C -0.128 4.128 20 C -0.155 4.155 21 C -0.159 4.159 22 C -0.156 4.156 23 C -0.148 4.148 24 C 0.015 3.985 25 H 0.083 0.917 26 O -0.375 6.375 27 C -0.009 4.009 28 H 0.065 0.935 29 H 0.110 0.890 30 H 0.039 0.961 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.237 0.763 34 H 0.142 0.858 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.133 0.867 44 H 0.090 0.910 45 H 0.219 0.781 46 H 0.076 0.924 47 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -7.886 -13.958 -2.858 16.284 hybrid contribution 0.970 1.134 1.010 1.802 sum -6.916 -12.824 -1.848 14.687 Atomic orbital electron populations 1.70033 1.05277 1.25805 1.53196 1.24996 0.95269 0.98448 1.00702 0.86350 0.78935 0.83216 0.78149 1.20961 1.21572 1.20880 1.19134 0.93138 0.84906 1.41675 0.91554 1.44025 1.35072 1.00412 1.51633 1.20831 0.88216 0.98900 0.87555 1.22577 1.01365 0.94710 1.00591 1.20801 0.84075 0.96007 0.93011 0.90414 1.45867 1.20240 1.57661 1.11206 1.18462 0.82931 0.77300 0.87581 1.90612 1.79068 1.59070 1.14629 1.22370 0.95439 1.06786 0.99789 1.22601 0.92681 0.91204 0.96683 1.20940 0.93846 0.98494 0.99560 1.21582 0.95808 1.01495 0.96647 1.21552 0.99041 0.99972 0.95384 1.21612 0.94434 0.98979 1.00529 1.21412 0.97455 1.03611 0.92317 1.22746 0.96100 0.82726 0.96962 0.91681 1.86490 1.49619 1.29647 1.71722 1.21522 0.98372 0.87750 0.93230 0.93451 0.88997 0.96061 0.91614 0.91869 0.76303 0.85810 0.90905 0.89991 0.91783 0.91609 0.92020 0.92126 0.91887 0.91681 0.86655 0.91010 0.78079 0.92364 0.95978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.40 11.12 55.49 0.62 -24.78 16 2 C 0.00 0.13 4.90 -17.43 -0.09 0.05 16 3 Si 0.90 21.14 29.59 -169.99 -5.03 16.11 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.26 -6.83 9.60 -15.06 -0.14 -6.97 16 8 H 0.07 1.70 7.88 -52.49 -0.41 1.29 16 9 N -0.59 -13.95 3.00 -172.32 -0.52 -14.47 16 10 C 0.17 3.98 5.08 -3.71 -0.02 3.96 16 11 C -0.15 -3.02 5.77 -26.61 -0.15 -3.18 16 12 C 0.17 3.03 2.47 -67.89 -0.17 2.86 16 13 H 0.08 1.49 7.57 -51.93 -0.39 1.09 16 14 N -0.70 -12.13 4.15 -54.94 -0.23 -12.35 16 15 C 0.55 9.48 7.55 -12.66 -0.10 9.38 16 16 O -0.55 -10.74 13.01 5.26 0.07 -10.67 16 17 C -0.22 -3.17 9.64 -37.81 -0.36 -3.53 16 18 C -0.03 -0.38 5.37 -100.61 -0.54 -0.92 16 19 C -0.09 -0.88 6.04 -27.48 -0.17 -1.05 16 20 C -0.12 -1.04 5.94 -26.63 -0.16 -1.20 16 21 C -0.12 -1.10 5.81 -26.77 -0.16 -1.25 16 22 C -0.12 -1.29 5.94 -26.63 -0.16 -1.45 16 23 C -0.11 -1.47 5.20 -27.48 -0.14 -1.61 16 24 C 0.08 1.29 3.36 -26.62 -0.09 1.20 16 25 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 26 O -0.57 -8.68 13.21 -35.23 -0.47 -9.14 16 27 C 0.12 2.30 5.84 -3.71 -0.02 2.28 16 28 H 0.26 7.02 8.31 -40.82 -0.34 6.69 16 29 H 0.09 2.43 5.92 -51.93 -0.31 2.13 16 30 H 0.02 0.52 7.74 -51.93 -0.40 0.12 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.40 6.72 6.85 -40.82 -0.28 6.44 16 34 H 0.12 1.52 7.98 -52.49 -0.42 1.10 16 35 H 0.07 0.64 7.94 -51.93 -0.41 0.23 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 43 H 0.12 1.88 5.04 -51.97 -0.26 1.61 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.37 4.06 9.08 45.56 0.41 4.47 16 46 H 0.06 1.08 7.93 -51.93 -0.41 0.67 16 47 H 0.02 0.44 6.65 -51.93 -0.35 0.09 16 LS Contribution 362.37 15.07 5.46 5.46 Total: -1.00 -30.38 362.37 -9.57 -39.95 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -7.02 Total: 11.33 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -2.46 Total: -1.43 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: -0.13 Total: -51.60 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.40 Total: -19.82 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.38 -9.57 -39.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090122505.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.485 kcal (2) G-P(sol) polarization free energy of solvation -30.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds