Wall clock time and date at job start Fri Apr 10 2020 18:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 120.00111 * 2 1 4 4 H 1.48500 * 109.47300 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47076 * 119.99878 * 3 2 1 6 6 H 1.48495 * 109.46963 * 239.99770 * 3 2 1 7 7 C 1.38820 * 119.99865 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99697 * 171.10446 * 7 2 1 9 9 N 1.36941 * 119.99930 * 351.09723 * 7 2 1 10 10 C 1.46926 * 120.62827 * 140.31722 * 9 7 2 11 11 C 1.53618 * 108.54344 * 126.37041 * 10 9 7 12 12 C 1.53041 * 109.24077 * 54.85636 * 11 10 9 13 13 H 1.09006 * 109.45850 * 58.53441 * 12 11 10 14 14 N 1.46502 * 109.45684 * 178.49186 * 12 11 10 15 15 C 1.34779 * 119.99773 * 275.06246 * 14 12 11 16 16 O 1.21608 * 120.00282 * 0.02562 * 15 14 12 17 17 C 1.47100 * 119.99749 * 179.97438 * 15 14 12 18 18 C 1.32996 * 120.00020 * 184.69595 * 17 15 14 19 19 C 1.51270 * 120.84930 * 11.27023 * 18 17 15 20 20 C 1.53665 * 108.30786 * 128.61683 * 19 18 17 21 21 C 1.52966 * 109.32316 * 54.86474 * 20 19 18 22 22 C 1.52959 * 109.81414 * 296.27296 * 21 20 19 23 23 C 1.51270 * 120.85160 * 191.55771 * 18 17 15 24 24 C 1.53037 * 109.54049 * 298.51146 * 12 11 10 25 25 H 1.09005 * 109.49728 * 301.41954 * 24 12 11 26 26 O 1.42895 * 109.49825 * 181.31908 * 24 12 11 27 27 C 1.46917 * 120.63370 * 320.60342 * 9 7 2 28 28 H 0.97001 * 120.00452 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.58644 * 246.20906 * 10 9 7 30 30 H 1.09010 * 109.58290 * 6.63072 * 10 9 7 31 31 H 1.09001 * 109.63239 * 294.86732 * 11 10 9 32 32 H 1.08996 * 109.45999 * 174.74593 * 11 10 9 33 33 H 0.96997 * 120.00308 * 95.07413 * 14 12 11 34 34 H 1.08002 * 120.00045 * 4.70529 * 17 15 14 35 35 H 1.08993 * 109.62894 * 248.39277 * 19 18 17 36 36 H 1.08998 * 109.62438 * 8.96385 * 19 18 17 37 37 H 1.08997 * 109.62918 * 294.84672 * 20 19 18 38 38 H 1.09001 * 109.42520 * 174.75838 * 20 19 18 39 39 H 1.08998 * 109.41170 * 176.16700 * 21 20 19 40 40 H 1.09007 * 109.40904 * 56.37657 * 21 20 19 41 41 H 1.08994 * 109.48030 * 303.61481 * 22 21 20 42 42 H 1.09000 * 109.47658 * 183.57688 * 22 21 20 43 43 H 1.09001 * 109.62641 * 351.03699 * 23 18 17 44 44 H 1.08994 * 109.62838 * 111.41730 * 23 18 17 45 45 H 0.96704 * 113.99793 * 180.16763 * 26 24 12 46 46 H 1.09003 * 109.59096 * 353.36531 * 27 9 7 47 47 H 1.08998 * 109.59408 * 113.65273 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6963 1.2125 6 1 3.1039 1.6963 -1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0804 -1.2079 -0.1441 9 7 1.3378 -2.3809 0.1846 10 6 1.6997 -3.5775 -0.5874 11 6 1.9668 -4.7293 0.3933 12 6 0.7480 -4.9120 1.3007 13 1 -0.1312 -5.1194 0.6906 14 7 0.9833 -6.0329 2.2143 15 6 0.7168 -7.2930 1.8174 16 8 0.2814 -7.4996 0.7009 17 6 0.9536 -8.4185 2.7344 18 6 0.7798 -9.6678 2.3127 19 6 0.5884 -9.9708 0.8431 20 6 1.5848 -11.0701 0.4430 21 6 1.4028 -12.2778 1.3639 22 6 1.7467 -11.8892 2.8028 23 6 0.7622 -10.8214 3.2910 24 6 0.5167 -3.6342 2.1106 25 1 1.4051 -3.4126 2.7021 26 8 -0.6027 -3.8165 2.9798 27 6 0.2369 -2.4714 1.1532 28 1 -0.4851 0.8400 -0.0004 29 1 0.8794 -3.8442 -1.2540 30 1 2.5979 -3.3775 -1.1718 31 1 2.8414 -4.4974 1.0011 32 1 2.1453 -5.6480 -0.1654 33 1 1.3308 -5.8681 3.1047 34 1 1.2685 -8.2304 3.7502 35 1 -0.4309 -10.3161 0.6702 36 1 0.7779 -9.0721 0.2562 37 1 2.6031 -10.6925 0.5357 38 1 1.4002 -11.3687 -0.5889 39 1 2.0610 -13.0836 1.0390 40 1 0.3675 -12.6160 1.3175 41 1 2.7612 -11.4923 2.8395 42 1 1.6767 -12.7683 3.4433 43 1 1.0634 -10.4694 4.2776 44 1 -0.2421 -11.2419 3.3432 45 1 -0.8090 -3.0433 3.5228 46 1 0.1696 -1.5414 1.7179 47 1 -0.7006 -2.6472 0.6257 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090122506.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:33 Heat of formation + Delta-G solvation = -65.091330 kcal Electronic energy + Delta-G solvation = -26070.790617 eV Core-core repulsion = 22446.537076 eV Total energy + Delta-G solvation = -3624.253541 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.99462 -38.51879 -37.48998 -35.22977 -34.29615 -32.80732 -32.06627 -31.09526 -29.59834 -28.84426 -26.96175 -24.96157 -23.10698 -22.64012 -22.02337 -21.25226 -20.25253 -19.59262 -18.53877 -17.06625 -16.58252 -16.53805 -15.98344 -15.23534 -14.87524 -14.74094 -14.51681 -14.27234 -13.85854 -13.75264 -13.55827 -13.38589 -13.24511 -12.76561 -12.70083 -12.38115 -12.17148 -11.98679 -11.94049 -11.64546 -11.28361 -11.16569 -11.06465 -10.87730 -10.83840 -10.73919 -10.45917 -10.38180 -10.22574 -10.10561 -9.60400 -9.40900 -9.19466 -8.89681 -8.62496 -8.50179 -6.59258 -5.87643 -3.45002 1.40123 3.32552 3.38413 3.39087 3.48956 3.52485 4.40052 4.51867 4.54061 4.62868 4.70551 4.86354 4.99873 5.16043 5.22743 5.28575 5.32670 5.41157 5.43516 5.45248 5.50428 5.63832 5.66045 5.75055 5.82308 5.87129 5.91279 5.94964 6.04059 6.10170 6.14642 6.20536 6.28973 6.46344 6.48673 6.50912 6.73556 6.76654 6.96059 6.98030 7.09762 7.41852 7.74269 7.86539 8.11027 8.44778 8.56840 9.13458 9.71559 10.35704 11.19993 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.033476 B = 0.002748 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.207784 B =10188.223451 C =10570.199931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.014 3.986 3 Si 0.904 3.096 4 H -0.290 1.290 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.266 4.266 8 H 0.062 0.938 9 N -0.587 5.587 10 C 0.145 3.855 11 C -0.138 4.138 12 C 0.162 3.838 13 H 0.088 0.912 14 N -0.711 5.711 15 C 0.546 3.454 16 O -0.543 6.543 17 C -0.227 4.227 18 C -0.026 4.026 19 C -0.127 4.127 20 C -0.116 4.116 21 C -0.123 4.123 22 C -0.116 4.116 23 C -0.093 4.093 24 C 0.072 3.928 25 H 0.051 0.949 26 O -0.573 6.573 27 C 0.154 3.846 28 H 0.257 0.743 29 H 0.024 0.976 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.396 0.604 34 H 0.123 0.877 35 H 0.073 0.927 36 H 0.130 0.870 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.375 0.625 46 H 0.079 0.921 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.764 -19.939 8.006 21.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.186 4.186 3 Si 0.734 3.266 4 H -0.215 1.215 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.395 4.395 8 H 0.080 0.920 9 N -0.311 5.311 10 C 0.019 3.981 11 C -0.179 4.179 12 C 0.058 3.942 13 H 0.106 0.894 14 N -0.359 5.359 15 C 0.336 3.664 16 O -0.424 6.424 17 C -0.248 4.248 18 C -0.028 4.028 19 C -0.163 4.163 20 C -0.154 4.154 21 C -0.161 4.161 22 C -0.154 4.154 23 C -0.130 4.130 24 C 0.011 3.989 25 H 0.069 0.931 26 O -0.377 6.377 27 C 0.027 3.973 28 H 0.067 0.933 29 H 0.042 0.958 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.230 0.770 34 H 0.141 0.859 35 H 0.091 0.909 36 H 0.147 0.853 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.101 0.899 45 H 0.221 0.779 46 H 0.098 0.902 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 2.327 -20.489 6.932 21.754 hybrid contribution 0.571 1.584 0.906 1.912 sum 2.898 -18.905 7.838 20.669 Atomic orbital electron populations 1.69962 1.05430 1.25971 1.52625 1.25424 0.95392 0.98747 0.99051 0.86364 0.78954 0.83036 0.78294 1.21529 1.20806 1.20601 1.19041 0.90376 0.83431 1.46697 0.92019 1.43856 1.38840 1.07099 1.41282 1.21060 0.98470 0.86476 0.92130 1.22486 0.96889 0.99935 0.98573 1.20959 0.99068 0.83606 0.90520 0.89440 1.46037 1.65703 1.06124 1.18006 1.18517 0.77703 0.83316 0.86913 1.90553 1.46585 1.83678 1.21592 1.22354 1.09481 0.92646 1.00354 1.22671 0.90039 0.93465 0.96650 1.21803 0.99292 1.02271 0.92982 1.21670 0.99648 0.95068 0.99003 1.21572 1.01627 0.97949 0.94950 1.21561 0.99208 0.98034 0.96574 1.20952 1.00535 0.94313 0.97183 1.22995 0.87796 0.96290 0.91848 0.93129 1.86427 1.51520 1.42416 1.57382 1.21311 0.91043 0.94709 0.90283 0.93330 0.95837 0.92130 0.92168 0.91901 0.77028 0.85946 0.90887 0.85278 0.92095 0.91662 0.92126 0.91937 0.91752 0.91728 0.90959 0.89941 0.77858 0.90242 0.95021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.55 11.59 55.49 0.64 -24.91 16 2 C 0.01 0.39 5.05 -17.43 -0.09 0.30 16 3 Si 0.90 21.09 29.56 -169.99 -5.03 16.07 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.27 -7.12 9.48 -15.05 -0.14 -7.26 16 8 H 0.06 1.63 7.84 -52.49 -0.41 1.21 16 9 N -0.59 -14.46 2.93 -172.05 -0.50 -14.97 16 10 C 0.15 3.12 6.54 -3.49 -0.02 3.10 16 11 C -0.14 -2.54 5.67 -26.39 -0.15 -2.69 16 12 C 0.16 2.98 2.11 -67.89 -0.14 2.84 16 13 H 0.09 1.86 7.58 -51.93 -0.39 1.46 16 14 N -0.71 -10.95 4.91 -54.95 -0.27 -11.22 16 15 C 0.55 8.58 7.62 -12.66 -0.10 8.49 16 16 O -0.54 -10.12 12.77 5.27 0.07 -10.05 16 17 C -0.23 -2.77 9.66 -37.81 -0.37 -3.14 16 18 C -0.03 -0.30 5.39 -100.61 -0.54 -0.84 16 19 C -0.13 -1.54 5.37 -27.26 -0.15 -1.68 16 20 C -0.12 -1.13 5.95 -26.40 -0.16 -1.28 16 21 C -0.12 -0.97 5.81 -26.77 -0.16 -1.13 16 22 C -0.12 -0.86 5.94 -26.64 -0.16 -1.02 16 23 C -0.09 -0.77 6.04 -27.49 -0.17 -0.93 16 24 C 0.07 1.34 3.14 -26.61 -0.08 1.26 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 26 O -0.57 -9.85 13.16 -35.23 -0.46 -10.31 16 27 C 0.15 3.55 4.84 -3.71 -0.02 3.54 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 1.26 7.93 -51.92 -0.41 0.85 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.40 5.18 8.58 -40.82 -0.35 4.83 16 34 H 0.12 1.19 7.96 -52.49 -0.42 0.77 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.13 1.96 4.64 -53.80 -0.25 1.71 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.52 7.92 -51.93 -0.41 0.11 16 44 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.37 5.11 9.08 45.56 0.41 5.52 16 46 H 0.08 1.98 6.70 -51.93 -0.35 1.64 16 47 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 367.25 15.07 5.53 5.53 Total: -1.00 -30.92 367.25 -9.66 -40.58 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -7.21 Total: 9.74 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -2.43 Total: -0.46 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.13 Total: -51.10 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.40 Total: -20.36 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.92 -9.66 -40.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090122506.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.512 kcal (2) G-P(sol) polarization free energy of solvation -30.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds