Wall clock time and date at job start Fri Apr 10 2020 18:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 120.00111 * 2 1 4 4 H 1.48500 * 109.47300 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47076 * 119.99878 * 3 2 1 6 6 H 1.48495 * 109.46963 * 239.99770 * 3 2 1 7 7 C 1.38820 * 119.99865 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99697 * 171.10446 * 7 2 1 9 9 N 1.36941 * 119.99930 * 351.09723 * 7 2 1 10 10 C 1.46926 * 120.62827 * 140.31722 * 9 7 2 11 11 C 1.53618 * 108.54344 * 126.37041 * 10 9 7 12 12 C 1.53041 * 109.24077 * 54.85636 * 11 10 9 13 13 H 1.09006 * 109.45850 * 58.53441 * 12 11 10 14 14 N 1.46502 * 109.45684 * 178.49186 * 12 11 10 15 15 C 1.34779 * 119.99773 * 275.06246 * 14 12 11 16 16 O 1.21608 * 120.00282 * 0.02562 * 15 14 12 17 17 C 1.47100 * 119.99749 * 179.97438 * 15 14 12 18 18 C 1.32996 * 120.00020 * 184.69595 * 17 15 14 19 19 C 1.51270 * 120.84930 * 11.27023 * 18 17 15 20 20 C 1.53665 * 108.30786 * 128.61683 * 19 18 17 21 21 C 1.52966 * 109.32316 * 54.86474 * 20 19 18 22 22 C 1.52959 * 109.81414 * 296.27296 * 21 20 19 23 23 C 1.51270 * 120.85160 * 191.55771 * 18 17 15 24 24 C 1.53037 * 109.54049 * 298.51146 * 12 11 10 25 25 H 1.09005 * 109.49728 * 301.41954 * 24 12 11 26 26 O 1.42895 * 109.49825 * 181.31908 * 24 12 11 27 27 C 1.46917 * 120.63370 * 320.60342 * 9 7 2 28 28 H 0.97001 * 120.00452 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.58644 * 246.20906 * 10 9 7 30 30 H 1.09010 * 109.58290 * 6.63072 * 10 9 7 31 31 H 1.09001 * 109.63239 * 294.86732 * 11 10 9 32 32 H 1.08996 * 109.45999 * 174.74593 * 11 10 9 33 33 H 0.96997 * 120.00308 * 95.07413 * 14 12 11 34 34 H 1.08002 * 120.00045 * 4.70529 * 17 15 14 35 35 H 1.08993 * 109.62894 * 248.39277 * 19 18 17 36 36 H 1.08998 * 109.62438 * 8.96385 * 19 18 17 37 37 H 1.08997 * 109.62918 * 294.84672 * 20 19 18 38 38 H 1.09001 * 109.42520 * 174.75838 * 20 19 18 39 39 H 1.08998 * 109.41170 * 176.16700 * 21 20 19 40 40 H 1.09007 * 109.40904 * 56.37657 * 21 20 19 41 41 H 1.08994 * 109.48030 * 303.61481 * 22 21 20 42 42 H 1.09000 * 109.47658 * 183.57688 * 22 21 20 43 43 H 1.09001 * 109.62641 * 351.03699 * 23 18 17 44 44 H 1.08994 * 109.62838 * 111.41730 * 23 18 17 45 45 H 0.96704 * 113.99793 * 180.16763 * 26 24 12 46 46 H 1.09003 * 109.59096 * 353.36531 * 27 9 7 47 47 H 1.08998 * 109.59408 * 113.65273 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6963 1.2125 6 1 3.1039 1.6963 -1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0804 -1.2079 -0.1441 9 7 1.3378 -2.3809 0.1846 10 6 1.6997 -3.5775 -0.5874 11 6 1.9668 -4.7293 0.3933 12 6 0.7480 -4.9120 1.3007 13 1 -0.1312 -5.1194 0.6906 14 7 0.9833 -6.0329 2.2143 15 6 0.7168 -7.2930 1.8174 16 8 0.2814 -7.4996 0.7009 17 6 0.9536 -8.4185 2.7344 18 6 0.7798 -9.6678 2.3127 19 6 0.5884 -9.9708 0.8431 20 6 1.5848 -11.0701 0.4430 21 6 1.4028 -12.2778 1.3639 22 6 1.7467 -11.8892 2.8028 23 6 0.7622 -10.8214 3.2910 24 6 0.5167 -3.6342 2.1106 25 1 1.4051 -3.4126 2.7021 26 8 -0.6027 -3.8165 2.9798 27 6 0.2369 -2.4714 1.1532 28 1 -0.4851 0.8400 -0.0004 29 1 0.8794 -3.8442 -1.2540 30 1 2.5979 -3.3775 -1.1718 31 1 2.8414 -4.4974 1.0011 32 1 2.1453 -5.6480 -0.1654 33 1 1.3308 -5.8681 3.1047 34 1 1.2685 -8.2304 3.7502 35 1 -0.4309 -10.3161 0.6702 36 1 0.7779 -9.0721 0.2562 37 1 2.6031 -10.6925 0.5357 38 1 1.4002 -11.3687 -0.5889 39 1 2.0610 -13.0836 1.0390 40 1 0.3675 -12.6160 1.3175 41 1 2.7612 -11.4923 2.8395 42 1 1.6767 -12.7683 3.4433 43 1 1.0634 -10.4694 4.2776 44 1 -0.2421 -11.2419 3.3432 45 1 -0.8090 -3.0433 3.5228 46 1 0.1696 -1.5414 1.7179 47 1 -0.7006 -2.6472 0.6257 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090122506.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:32 Heat of formation + Delta-G solvation = -86.190588 kcal Electronic energy + Delta-G solvation = -26071.705550 eV Core-core repulsion = 22446.537076 eV Total energy + Delta-G solvation = -3625.168473 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.23746 -39.78726 -38.62733 -36.87965 -35.78953 -34.02413 -33.54131 -31.83564 -31.31503 -30.51789 -28.06956 -26.67726 -24.27626 -23.85107 -23.56298 -22.38798 -21.42850 -21.07310 -19.61761 -18.78135 -18.12920 -17.79936 -17.32375 -16.70406 -16.15911 -15.91998 -15.68568 -15.57144 -15.17334 -15.13254 -14.97084 -14.54956 -14.43164 -14.15761 -13.83220 -13.59730 -13.52003 -13.39156 -13.20325 -12.99187 -12.74697 -12.67519 -12.57064 -12.14781 -12.04977 -11.97688 -11.93950 -11.81243 -11.62153 -11.29850 -11.16049 -10.97128 -10.62501 -10.33654 -9.99044 -9.78210 -8.60757 -7.92652 -5.54893 0.42923 1.47820 1.49060 1.56379 2.26727 2.35631 2.47088 3.11687 3.25785 3.64469 3.72964 3.81755 3.91310 4.05866 4.07080 4.09519 4.23096 4.30445 4.36320 4.41075 4.44574 4.48662 4.52918 4.66433 4.70087 4.81939 4.89384 4.93423 5.02116 5.04476 5.06428 5.13819 5.16283 5.20148 5.20666 5.29203 5.35262 5.46108 5.50912 5.56294 5.62866 5.65125 5.82137 6.38761 6.68390 6.81984 7.10905 7.37583 7.72694 8.33461 9.12725 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.033476 B = 0.002748 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.207784 B =10188.223451 C =10570.199931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.037 4.037 3 Si 0.972 3.028 4 H -0.294 1.294 5 H -0.271 1.271 6 H -0.275 1.275 7 C -0.277 4.277 8 H 0.067 0.933 9 N -0.602 5.602 10 C 0.143 3.857 11 C -0.121 4.121 12 C 0.171 3.829 13 H 0.052 0.948 14 N -0.703 5.703 15 C 0.538 3.462 16 O -0.580 6.580 17 C -0.240 4.240 18 C -0.017 4.017 19 C -0.133 4.133 20 C -0.113 4.113 21 C -0.122 4.122 22 C -0.114 4.114 23 C -0.090 4.090 24 C 0.093 3.907 25 H 0.067 0.933 26 O -0.574 6.574 27 C 0.163 3.837 28 H 0.253 0.747 29 H 0.006 0.994 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.411 0.589 34 H 0.154 0.846 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.392 0.608 46 H 0.058 0.942 47 H -0.005 1.005 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.366 -21.703 10.168 24.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.235 4.235 3 Si 0.799 3.201 4 H -0.220 1.220 5 H -0.196 1.196 6 H -0.201 1.201 7 C -0.407 4.407 8 H 0.084 0.916 9 N -0.327 5.327 10 C 0.017 3.983 11 C -0.161 4.161 12 C 0.066 3.934 13 H 0.071 0.929 14 N -0.352 5.352 15 C 0.330 3.670 16 O -0.464 6.464 17 C -0.261 4.261 18 C -0.019 4.019 19 C -0.169 4.169 20 C -0.151 4.151 21 C -0.159 4.159 22 C -0.152 4.152 23 C -0.127 4.127 24 C 0.032 3.968 25 H 0.085 0.915 26 O -0.381 6.381 27 C 0.036 3.964 28 H 0.062 0.938 29 H 0.024 0.976 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.247 0.753 34 H 0.171 0.829 35 H 0.087 0.913 36 H 0.114 0.886 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.104 0.896 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.241 0.759 46 H 0.076 0.924 47 H 0.013 0.987 Dipole moment (debyes) X Y Z Total from point charges 3.949 -22.273 9.133 24.394 hybrid contribution 0.009 2.062 0.147 2.068 sum 3.958 -20.211 9.279 22.588 Atomic orbital electron populations 1.70131 1.06964 1.26408 1.54048 1.26202 0.96125 1.02052 0.99071 0.85298 0.77574 0.78609 0.78636 1.22017 1.19648 1.20070 1.19393 0.90849 0.84372 1.46058 0.91564 1.44101 1.38812 1.07535 1.42286 1.21131 0.97913 0.86627 0.92646 1.22262 0.97286 0.98592 0.97965 1.20595 0.97648 0.84555 0.90651 0.92926 1.45830 1.65842 1.05315 1.18174 1.19198 0.76859 0.83990 0.86972 1.90573 1.48152 1.84231 1.23414 1.22376 1.11315 0.91405 1.00976 1.22996 0.87864 0.94404 0.96641 1.21712 0.99750 1.01731 0.93710 1.21643 0.98514 0.95207 0.99731 1.21573 1.02224 0.97157 0.94970 1.21576 0.98750 0.98499 0.96334 1.21040 1.01448 0.93199 0.97018 1.22559 0.88718 0.94469 0.91075 0.91523 1.86405 1.50997 1.43499 1.57159 1.21109 0.89324 0.95606 0.90346 0.93778 0.97623 0.91620 0.90805 0.91342 0.75282 0.82876 0.91309 0.88555 0.92525 0.91616 0.90787 0.91631 0.91865 0.89595 0.89133 0.89002 0.75883 0.92389 0.98661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.51 11.59 21.65 0.25 -54.26 16 2 C -0.04 -2.05 5.05 84.86 0.43 -1.62 16 3 Si 0.97 43.53 29.56 68.60 2.03 45.55 16 4 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 5 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 6 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 7 C -0.28 -14.95 9.48 84.03 0.80 -14.15 16 8 H 0.07 3.46 7.84 -2.91 -0.02 3.44 16 9 N -0.60 -30.33 2.93 -698.26 -2.04 -32.38 16 10 C 0.14 6.27 6.54 86.51 0.57 6.83 16 11 C -0.12 -4.41 5.67 30.82 0.17 -4.24 16 12 C 0.17 6.30 2.11 45.02 0.10 6.39 16 13 H 0.05 2.33 7.58 -2.38 -0.02 2.31 16 14 N -0.70 -20.95 4.91 -446.01 -2.19 -23.14 16 15 C 0.54 16.70 7.62 86.57 0.66 17.36 16 16 O -0.58 -22.30 12.77 -4.06 -0.05 -22.36 16 17 C -0.24 -5.40 9.66 23.43 0.23 -5.17 16 18 C -0.02 -0.35 5.39 -17.25 -0.09 -0.44 16 19 C -0.13 -3.17 5.37 30.25 0.16 -3.01 16 20 C -0.11 -2.08 5.95 30.81 0.18 -1.90 16 21 C -0.12 -1.60 5.81 30.57 0.18 -1.43 16 22 C -0.11 -1.29 5.94 30.66 0.18 -1.11 16 23 C -0.09 -1.18 6.04 30.10 0.18 -1.00 16 24 C 0.09 3.45 3.14 30.67 0.10 3.55 16 25 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 26 O -0.57 -19.28 13.16 -148.98 -1.96 -21.24 16 27 C 0.16 7.79 4.84 86.37 0.42 8.21 16 28 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 29 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.07 2.76 7.93 -2.38 -0.02 2.74 16 31 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.41 9.81 8.58 -92.71 -0.80 9.02 16 34 H 0.15 2.44 7.96 -2.91 -0.02 2.41 16 35 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.10 3.04 4.64 -31.93 -0.15 2.89 16 37 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 41 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.09 0.91 7.92 -2.39 -0.02 0.89 16 44 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.39 10.26 9.08 -74.05 -0.67 9.59 16 46 H 0.06 2.99 6.70 -2.39 -0.02 2.97 16 47 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 Total: -1.00 -68.99 367.25 -0.35 -69.34 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: -0.64 Total: 30.21 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 4.26 Total: 8.27 kcal Atomic # 7 Polarization: -105.79 SS G_CDS: -3.98 Total: -109.78 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -2.01 Total: -43.60 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -68.99 -0.35 -69.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090122506.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.846 kcal (2) G-P(sol) polarization free energy of solvation -68.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds