Wall clock time and date at job start Fri Apr 10 2020 18:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.47103 * 120.00054 * 2 1 4 4 O 1.21610 * 119.99953 * 179.97438 * 3 2 1 5 5 N 1.34777 * 119.99799 * 359.97438 * 3 2 1 6 6 C 1.46499 * 119.99659 * 180.02562 * 5 3 2 7 7 H 1.08992 * 109.46271 * 34.98058 * 6 5 3 8 8 C 1.53039 * 109.46348 * 275.00040 * 6 5 3 9 9 C 1.53190 * 109.31572 * 178.61734 * 8 6 5 10 10 N 1.46922 * 108.77473 * 54.63436 * 9 8 6 11 11 C 1.36941 * 120.63104 * 126.37146 * 10 9 8 12 12 H 1.07998 * 120.00083 * 207.75502 * 11 10 9 13 13 C 1.38811 * 119.99549 * 27.48072 * 11 10 9 14 14 N 1.31615 * 120.00401 * 17.80937 * 13 11 10 15 15 Si 1.86804 * 119.99838 * 197.81013 * 13 11 10 16 16 H 1.48498 * 109.47053 * 94.31981 * 15 13 11 17 17 H 1.48488 * 109.47336 * 214.32263 * 15 13 11 18 18 H 1.48505 * 109.47162 * 334.32228 * 15 13 11 19 19 C 1.46928 * 118.73986 * 306.64636 * 10 9 8 20 20 C 1.52755 * 109.00853 * 53.31044 * 19 10 9 21 21 H 1.08999 * 109.56408 * 185.55320 * 20 19 10 22 22 O 1.42901 * 109.36374 * 65.49801 * 20 19 10 23 23 C 1.32988 * 120.00033 * 179.97438 * 2 1 3 24 24 C 1.51448 * 126.34228 * 179.69215 * 23 2 1 25 25 C 1.54283 * 106.85257 * 180.24662 * 24 23 2 26 26 C 1.54982 * 103.65857 * 23.48383 * 25 24 23 27 27 C 1.51850 * 126.34241 * 0.02562 * 23 2 1 28 28 H 1.09007 * 109.46295 * 90.00703 * 1 2 3 29 29 H 1.09001 * 109.47266 * 209.99955 * 1 2 3 30 30 H 1.08993 * 109.47620 * 330.01130 * 1 2 3 31 31 H 0.97001 * 120.00252 * 0.02562 * 5 3 2 32 32 H 1.08999 * 109.49559 * 58.66632 * 8 6 5 33 33 H 1.09004 * 109.52396 * 298.58879 * 8 6 5 34 34 H 1.09007 * 109.58425 * 294.85426 * 9 8 6 35 35 H 1.08999 * 109.70669 * 174.49731 * 9 8 6 36 36 H 0.97000 * 120.00043 * 179.97438 * 14 13 11 37 37 H 1.09007 * 109.58656 * 173.14709 * 19 10 9 38 38 H 1.09003 * 109.58549 * 293.56760 * 19 10 9 39 39 H 0.96701 * 113.99971 * 60.15540 * 22 20 19 40 40 H 1.08999 * 109.98866 * 299.73059 * 24 23 2 41 41 H 1.09006 * 109.98419 * 61.03916 * 24 23 2 42 42 H 1.08998 * 110.79429 * 264.86285 * 25 24 23 43 43 H 1.08998 * 110.55440 * 141.99412 * 25 24 23 44 44 H 1.08997 * 110.83177 * 204.48620 * 26 25 24 45 45 H 1.09003 * 111.00611 * 80.99471 * 26 25 24 46 46 H 1.08993 * 110.44282 * 274.92265 * 27 23 2 47 47 H 1.09000 * 110.43700 * 37.44890 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2426 1.2739 0.0000 4 8 3.4586 1.2739 0.0005 5 7 1.5686 2.4411 -0.0005 6 6 2.3012 3.7098 -0.0011 7 1 3.2119 3.6030 -0.5902 8 6 2.6651 4.0892 1.4362 9 6 3.4607 5.3983 1.4288 10 7 2.6838 6.4197 0.7134 11 6 2.4102 7.6263 1.3003 12 1 1.5236 8.1750 1.0189 13 6 3.2695 8.1413 2.2612 14 7 4.4965 7.6764 2.3640 15 14 2.6843 9.4944 3.4085 16 1 2.1828 8.8915 4.6696 17 1 3.8140 10.4090 3.7121 18 1 1.5907 10.2582 2.7559 19 6 2.2009 6.1197 -0.6414 20 6 1.4241 4.8047 -0.6129 21 1 1.1460 4.5229 -1.6285 22 8 0.2447 4.9681 0.1773 23 6 2.1720 -1.1517 0.0005 24 6 3.6772 -1.3190 -0.0060 25 6 3.9586 -2.8359 -0.0089 26 6 2.6648 -3.4470 -0.6043 27 6 1.5627 -2.5426 0.0006 28 1 -0.3632 -0.0001 -1.0278 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5136 31 1 0.5986 2.4411 -0.0005 32 1 3.2703 3.2982 1.8791 33 1 1.7540 4.2204 2.0201 34 1 4.4139 5.2436 0.9232 35 1 3.6392 5.7257 2.4530 36 1 5.0970 8.0366 3.0352 37 1 1.5462 6.9219 -0.9820 38 1 3.0493 6.0251 -1.3192 39 1 -0.3588 5.6478 -0.1528 40 1 4.0995 -0.8581 -0.8989 41 1 4.1064 -0.8644 0.8869 42 1 4.1231 -3.2009 1.0049 43 1 4.8164 -3.0648 -0.6412 44 1 2.5395 -4.4803 -0.2806 45 1 2.6663 -3.3811 -1.6923 46 1 1.3292 -2.8559 1.0181 47 1 0.6674 -2.5660 -0.6208 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090182575.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:53 Heat of formation + Delta-G solvation = -64.997067 kcal Electronic energy + Delta-G solvation = -26393.104557 eV Core-core repulsion = 22768.855104 eV Total energy + Delta-G solvation = -3624.249453 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.99632 -38.52715 -37.48813 -34.90638 -34.28735 -33.53334 -31.68768 -29.89291 -29.06303 -28.76842 -27.61566 -25.37676 -24.15810 -22.32129 -21.97615 -20.86011 -20.37138 -19.54594 -18.17510 -17.11859 -16.43059 -16.13890 -15.81793 -15.73044 -14.91235 -14.63041 -14.47895 -14.11943 -13.91842 -13.56577 -13.44969 -13.27901 -12.99652 -12.70588 -12.66399 -12.46098 -12.11526 -12.04817 -11.85929 -11.36220 -11.25036 -11.18444 -11.11806 -10.98391 -10.84263 -10.79386 -10.64779 -10.26439 -10.17555 -10.01415 -9.70069 -9.44323 -9.24783 -8.89746 -8.55345 -8.34382 -6.65976 -5.76626 -3.18485 1.41873 3.39223 3.46308 3.46766 3.47675 3.50245 4.30429 4.48369 4.49369 4.72743 4.80306 4.88371 4.99304 5.09574 5.25607 5.29400 5.37840 5.38372 5.42712 5.48062 5.52632 5.59570 5.63265 5.65102 5.69284 5.81849 5.84373 5.88799 6.00184 6.10240 6.16323 6.28889 6.40637 6.44599 6.53352 6.55325 6.61098 6.70001 6.86810 7.02106 7.43598 7.70471 7.80747 7.89681 8.11188 8.45964 8.56361 9.21663 9.84791 10.40986 11.31829 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.026630 B = 0.003069 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.194213 B = 9121.140540 C = 9607.371622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.186 4.186 3 C 0.549 3.451 4 O -0.543 6.543 5 N -0.716 5.716 6 C 0.163 3.837 7 H 0.089 0.911 8 C -0.142 4.142 9 C 0.174 3.826 10 N -0.582 5.582 11 C -0.249 4.249 12 H 0.064 0.936 13 C 0.002 3.998 14 N -0.901 5.901 15 Si 0.903 3.097 16 H -0.288 1.288 17 H -0.292 1.292 18 H -0.279 1.279 19 C 0.119 3.881 20 C 0.082 3.918 21 H 0.045 0.955 22 O -0.555 6.555 23 C -0.043 4.043 24 C -0.090 4.090 25 C -0.129 4.129 26 C -0.124 4.124 27 C -0.098 4.098 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.400 0.600 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.019 0.981 35 H 0.090 0.910 36 H 0.254 0.746 37 H 0.061 0.939 38 H 0.026 0.974 39 H 0.372 0.628 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.084 0.916 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.387 -19.435 -6.983 22.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.189 4.189 3 C 0.337 3.663 4 O -0.423 6.423 5 N -0.367 5.367 6 C 0.059 3.941 7 H 0.107 0.893 8 C -0.183 4.183 9 C 0.047 3.953 10 N -0.304 5.304 11 C -0.379 4.379 12 H 0.082 0.918 13 C -0.197 4.197 14 N -0.545 5.545 15 Si 0.733 3.267 16 H -0.215 1.215 17 H -0.218 1.218 18 H -0.205 1.205 19 C -0.009 4.009 20 C 0.021 3.979 21 H 0.063 0.937 22 O -0.360 6.360 23 C -0.045 4.045 24 C -0.127 4.127 25 C -0.167 4.167 26 C -0.161 4.161 27 C -0.135 4.135 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.235 0.765 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.037 0.963 35 H 0.108 0.892 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.044 0.956 39 H 0.218 0.782 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.103 0.897 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.093 -19.801 -6.524 22.022 hybrid contribution -0.976 1.212 0.312 1.587 sum -8.069 -18.589 -6.212 21.195 Atomic orbital electron populations 1.20704 0.90983 1.02860 1.02166 1.20841 0.95947 0.92184 1.09898 1.18273 0.87315 0.83976 0.76700 1.90769 1.13471 1.87657 1.50387 1.46124 1.10483 1.05603 1.74478 1.20985 0.93971 0.80279 0.98896 0.89267 1.22472 1.01336 0.99822 0.94630 1.20781 0.90740 0.84279 0.99455 1.43902 1.62564 1.13582 1.10366 1.19135 1.03470 0.96411 1.18847 0.91782 1.25022 0.94651 0.98441 1.01593 1.70043 1.04235 1.44870 1.35383 0.86265 0.77671 0.81364 0.81381 1.21502 1.21847 1.20468 1.21450 0.96458 0.93685 0.89298 1.22556 0.86458 0.96958 0.91972 0.93733 1.86450 1.32583 1.61074 1.55895 1.22670 0.96491 0.93404 0.91943 1.21248 0.92190 0.95185 1.04030 1.22472 0.97617 0.95556 1.01045 1.22510 0.94683 0.98518 1.00390 1.21546 0.98474 0.91738 1.01719 0.91328 0.91423 0.91475 0.76505 0.93084 0.91668 0.96306 0.89178 0.93612 0.92079 0.95599 0.78198 0.89678 0.89684 0.91480 0.91357 0.91232 0.91230 0.89733 0.90625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 9.16 36.01 0.33 -0.70 16 2 C -0.19 -2.34 6.00 -102.85 -0.62 -2.95 16 3 C 0.55 8.89 7.71 -12.66 -0.10 8.79 16 4 O -0.54 -10.53 13.77 5.27 0.07 -10.46 16 5 N -0.72 -11.21 5.00 -54.95 -0.27 -11.49 16 6 C 0.16 2.99 2.20 -67.89 -0.15 2.84 16 7 H 0.09 1.78 7.57 -51.93 -0.39 1.39 16 8 C -0.14 -3.03 5.51 -26.61 -0.15 -3.17 16 9 C 0.17 4.33 5.32 -3.71 -0.02 4.31 16 10 N -0.58 -14.53 2.94 -172.58 -0.51 -15.04 16 11 C -0.25 -6.80 9.59 -15.06 -0.14 -6.94 16 12 H 0.06 1.70 7.89 -52.49 -0.41 1.29 16 13 C 0.00 0.04 4.90 -17.43 -0.09 -0.04 16 14 N -0.90 -26.53 11.20 55.49 0.62 -25.91 16 15 Si 0.90 21.89 29.59 -169.99 -5.03 16.86 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 17 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 C 0.12 2.40 6.12 -3.93 -0.02 2.38 16 20 C 0.08 1.39 3.37 -26.83 -0.09 1.29 16 21 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 22 O -0.56 -9.13 12.08 -35.23 -0.43 -9.56 16 23 C -0.04 -0.50 6.12 -100.23 -0.61 -1.11 16 24 C -0.09 -1.09 4.81 -26.84 -0.13 -1.22 16 25 C -0.13 -1.15 6.88 -25.01 -0.17 -1.33 16 26 C -0.12 -0.93 6.94 -24.70 -0.17 -1.11 16 27 C -0.10 -0.81 5.66 -26.33 -0.15 -0.96 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.53 7.22 -51.93 -0.37 0.15 16 30 H 0.07 0.63 6.70 -51.93 -0.35 0.28 16 31 H 0.40 5.46 6.36 -40.82 -0.26 5.20 16 32 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.06 1.45 7.61 -51.93 -0.40 1.06 16 34 H 0.02 0.50 8.14 -51.92 -0.42 0.07 16 35 H 0.09 2.52 6.03 -51.93 -0.31 2.21 16 36 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 38 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.37 4.81 9.08 45.56 0.41 5.23 16 40 H 0.08 1.16 7.67 -51.93 -0.40 0.76 16 41 H 0.08 1.19 7.68 -51.93 -0.40 0.79 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.08 0.54 7.69 -51.93 -0.40 0.14 16 LS Contribution 365.35 15.07 5.51 5.51 Total: -1.00 -32.23 365.35 -9.37 -41.61 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -7.05 Total: 8.39 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -2.28 Total: 0.09 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: -0.16 Total: -52.43 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.35 Total: -20.02 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.23 -9.37 -41.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090182575.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.390 kcal (2) G-P(sol) polarization free energy of solvation -32.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds