Wall clock time and date at job start Fri Apr 10 2020 18:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.47103 * 120.00054 * 2 1 4 4 O 1.21610 * 119.99953 * 179.97438 * 3 2 1 5 5 N 1.34777 * 119.99799 * 359.97438 * 3 2 1 6 6 C 1.46499 * 119.99659 * 180.02562 * 5 3 2 7 7 H 1.08992 * 109.46271 * 34.98058 * 6 5 3 8 8 C 1.53039 * 109.46348 * 275.00040 * 6 5 3 9 9 C 1.53190 * 109.31572 * 178.61734 * 8 6 5 10 10 N 1.46922 * 108.77473 * 54.63436 * 9 8 6 11 11 C 1.36941 * 120.63104 * 126.37146 * 10 9 8 12 12 H 1.07998 * 120.00083 * 207.75502 * 11 10 9 13 13 C 1.38811 * 119.99549 * 27.48072 * 11 10 9 14 14 N 1.31615 * 120.00401 * 17.80937 * 13 11 10 15 15 Si 1.86804 * 119.99838 * 197.81013 * 13 11 10 16 16 H 1.48498 * 109.47053 * 94.31981 * 15 13 11 17 17 H 1.48488 * 109.47336 * 214.32263 * 15 13 11 18 18 H 1.48505 * 109.47162 * 334.32228 * 15 13 11 19 19 C 1.46928 * 118.73986 * 306.64636 * 10 9 8 20 20 C 1.52755 * 109.00853 * 53.31044 * 19 10 9 21 21 H 1.08999 * 109.56408 * 185.55320 * 20 19 10 22 22 O 1.42901 * 109.36374 * 65.49801 * 20 19 10 23 23 C 1.32988 * 120.00033 * 179.97438 * 2 1 3 24 24 C 1.51448 * 126.34228 * 179.69215 * 23 2 1 25 25 C 1.54283 * 106.85257 * 180.24662 * 24 23 2 26 26 C 1.54982 * 103.65857 * 23.48383 * 25 24 23 27 27 C 1.51850 * 126.34241 * 0.02562 * 23 2 1 28 28 H 1.09007 * 109.46295 * 90.00703 * 1 2 3 29 29 H 1.09001 * 109.47266 * 209.99955 * 1 2 3 30 30 H 1.08993 * 109.47620 * 330.01130 * 1 2 3 31 31 H 0.97001 * 120.00252 * 0.02562 * 5 3 2 32 32 H 1.08999 * 109.49559 * 58.66632 * 8 6 5 33 33 H 1.09004 * 109.52396 * 298.58879 * 8 6 5 34 34 H 1.09007 * 109.58425 * 294.85426 * 9 8 6 35 35 H 1.08999 * 109.70669 * 174.49731 * 9 8 6 36 36 H 0.97000 * 120.00043 * 179.97438 * 14 13 11 37 37 H 1.09007 * 109.58656 * 173.14709 * 19 10 9 38 38 H 1.09003 * 109.58549 * 293.56760 * 19 10 9 39 39 H 0.96701 * 113.99971 * 60.15540 * 22 20 19 40 40 H 1.08999 * 109.98866 * 299.73059 * 24 23 2 41 41 H 1.09006 * 109.98419 * 61.03916 * 24 23 2 42 42 H 1.08998 * 110.79429 * 264.86285 * 25 24 23 43 43 H 1.08998 * 110.55440 * 141.99412 * 25 24 23 44 44 H 1.08997 * 110.83177 * 204.48620 * 26 25 24 45 45 H 1.09003 * 111.00611 * 80.99471 * 26 25 24 46 46 H 1.08993 * 110.44282 * 274.92265 * 27 23 2 47 47 H 1.09000 * 110.43700 * 37.44890 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2426 1.2739 0.0000 4 8 3.4586 1.2739 0.0005 5 7 1.5686 2.4411 -0.0005 6 6 2.3012 3.7098 -0.0011 7 1 3.2119 3.6030 -0.5902 8 6 2.6651 4.0892 1.4362 9 6 3.4607 5.3983 1.4288 10 7 2.6838 6.4197 0.7134 11 6 2.4102 7.6263 1.3003 12 1 1.5236 8.1750 1.0189 13 6 3.2695 8.1413 2.2612 14 7 4.4965 7.6764 2.3640 15 14 2.6843 9.4944 3.4085 16 1 2.1828 8.8915 4.6696 17 1 3.8140 10.4090 3.7121 18 1 1.5907 10.2582 2.7559 19 6 2.2009 6.1197 -0.6414 20 6 1.4241 4.8047 -0.6129 21 1 1.1460 4.5229 -1.6285 22 8 0.2447 4.9681 0.1773 23 6 2.1720 -1.1517 0.0005 24 6 3.6772 -1.3190 -0.0060 25 6 3.9586 -2.8359 -0.0089 26 6 2.6648 -3.4470 -0.6043 27 6 1.5627 -2.5426 0.0006 28 1 -0.3632 -0.0001 -1.0278 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5136 31 1 0.5986 2.4411 -0.0005 32 1 3.2703 3.2982 1.8791 33 1 1.7540 4.2204 2.0201 34 1 4.4139 5.2436 0.9232 35 1 3.6392 5.7257 2.4530 36 1 5.0970 8.0366 3.0352 37 1 1.5462 6.9219 -0.9820 38 1 3.0493 6.0251 -1.3192 39 1 -0.3588 5.6478 -0.1528 40 1 4.0995 -0.8581 -0.8989 41 1 4.1064 -0.8644 0.8869 42 1 4.1231 -3.2009 1.0049 43 1 4.8164 -3.0648 -0.6412 44 1 2.5395 -4.4803 -0.2806 45 1 2.6663 -3.3811 -1.6923 46 1 1.3292 -2.8559 1.0181 47 1 0.6674 -2.5660 -0.6208 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090182575.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:52 Heat of formation + Delta-G solvation = -87.409821 kcal Electronic energy + Delta-G solvation = -26394.076447 eV Core-core repulsion = 22768.855104 eV Total energy + Delta-G solvation = -3625.221343 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.27698 -39.82358 -38.60749 -36.60655 -35.70151 -34.55548 -33.50864 -31.64158 -30.40616 -29.83924 -28.41723 -27.10210 -25.35515 -23.98253 -23.63235 -21.70349 -21.54246 -21.12456 -19.42098 -18.85936 -17.57588 -17.41507 -17.33172 -16.66815 -16.58172 -16.03720 -15.79893 -15.58192 -15.44286 -15.10145 -14.74271 -14.42390 -14.20877 -13.97312 -13.73403 -13.67815 -13.35566 -13.22309 -13.01506 -12.82387 -12.77575 -12.66259 -12.42652 -12.18004 -12.10625 -12.06034 -11.93446 -11.90069 -11.85321 -11.48520 -11.41493 -10.90688 -10.65689 -10.52331 -10.08031 -9.63947 -8.70174 -7.87544 -5.32361 0.41277 1.46140 1.48692 1.57158 2.21585 2.29595 2.50436 3.26882 3.37747 3.46821 3.63608 3.75819 3.82139 3.96989 4.04154 4.14277 4.19162 4.27088 4.32923 4.35501 4.50278 4.67243 4.70699 4.74919 4.80800 4.85025 4.85285 4.89229 4.92856 4.97807 4.98955 5.06752 5.10581 5.13530 5.20420 5.23127 5.40233 5.42641 5.51759 5.53963 5.61624 5.66537 5.70954 6.36198 6.66626 6.98067 7.12526 7.31581 7.82252 8.35055 9.19586 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.026630 B = 0.003069 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.194213 B = 9121.140540 C = 9607.371622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.201 4.201 3 C 0.540 3.460 4 O -0.586 6.586 5 N -0.705 5.705 6 C 0.168 3.832 7 H 0.070 0.930 8 C -0.123 4.123 9 C 0.184 3.816 10 N -0.598 5.598 11 C -0.252 4.252 12 H 0.075 0.925 13 C -0.058 4.058 14 N -0.939 5.939 15 Si 0.969 3.031 16 H -0.291 1.291 17 H -0.298 1.298 18 H -0.262 1.262 19 C 0.111 3.889 20 C 0.101 3.899 21 H 0.085 0.915 22 O -0.563 6.563 23 C -0.041 4.041 24 C -0.096 4.096 25 C -0.126 4.126 26 C -0.118 4.118 27 C -0.092 4.092 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.413 0.587 32 H 0.038 0.962 33 H 0.058 0.942 34 H -0.010 1.010 35 H 0.054 0.946 36 H 0.248 0.752 37 H 0.078 0.922 38 H 0.021 0.979 39 H 0.391 0.609 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.093 0.907 45 H 0.071 0.929 46 H 0.099 0.901 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.708 -21.177 -8.009 25.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.204 4.204 3 C 0.330 3.670 4 O -0.468 6.468 5 N -0.356 5.356 6 C 0.063 3.937 7 H 0.088 0.912 8 C -0.164 4.164 9 C 0.057 3.943 10 N -0.321 5.321 11 C -0.382 4.382 12 H 0.093 0.907 13 C -0.252 4.252 14 N -0.586 5.586 15 Si 0.797 3.203 16 H -0.218 1.218 17 H -0.225 1.225 18 H -0.186 1.186 19 C -0.015 4.015 20 C 0.040 3.960 21 H 0.103 0.897 22 O -0.370 6.370 23 C -0.043 4.043 24 C -0.133 4.133 25 C -0.163 4.163 26 C -0.155 4.155 27 C -0.129 4.129 28 H 0.103 0.897 29 H 0.106 0.894 30 H 0.083 0.917 31 H 0.251 0.749 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.008 0.992 35 H 0.072 0.928 36 H 0.057 0.943 37 H 0.097 0.903 38 H 0.039 0.961 39 H 0.240 0.760 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.111 0.889 45 H 0.090 0.910 46 H 0.117 0.883 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.490 -21.548 -7.586 25.138 hybrid contribution 0.130 1.733 0.590 1.836 sum -10.360 -19.815 -6.996 23.428 Atomic orbital electron populations 1.20739 0.88083 1.03787 1.03477 1.20907 0.97740 0.90308 1.11464 1.19015 0.87094 0.85273 0.75577 1.90756 1.15536 1.88300 1.52234 1.45904 1.10950 1.04482 1.74276 1.20676 0.94339 0.82378 0.96310 0.91229 1.22175 0.99939 0.97345 0.96916 1.20451 0.90512 0.86203 0.97098 1.44097 1.62600 1.13002 1.12374 1.19546 1.03348 0.96791 1.18563 0.90714 1.25841 0.94767 1.01193 1.03439 1.70213 1.05509 1.46732 1.36140 0.85220 0.77240 0.78670 0.79129 1.21779 1.22495 1.18614 1.21721 0.96894 0.96246 0.86646 1.22264 0.85949 0.94099 0.93725 0.89722 1.86413 1.32342 1.61966 1.56318 1.23057 0.96128 0.95115 0.90004 1.21251 0.93089 0.97408 1.01521 1.22462 0.99013 0.92981 1.01886 1.22529 0.93051 0.99481 1.00472 1.21635 0.99162 0.89034 1.03050 0.89721 0.89385 0.91655 0.74890 0.94312 0.92297 0.99168 0.92768 0.94284 0.90325 0.96081 0.76008 0.92025 0.92617 0.90767 0.90910 0.88876 0.90979 0.88286 0.88526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.60 9.16 71.24 0.65 -0.95 16 2 C -0.20 -4.79 6.00 -18.70 -0.11 -4.91 16 3 C 0.54 17.58 7.71 86.57 0.67 18.25 16 4 O -0.59 -23.88 13.77 -4.06 -0.06 -23.94 16 5 N -0.70 -21.49 5.00 -446.01 -2.23 -23.71 16 6 C 0.17 6.18 2.20 45.02 0.10 6.28 16 7 H 0.07 2.86 7.57 -2.39 -0.02 2.85 16 8 C -0.12 -5.43 5.51 30.67 0.17 -5.26 16 9 C 0.18 9.66 5.32 86.36 0.46 10.12 16 10 N -0.60 -30.25 2.94 -699.92 -2.06 -32.31 16 11 C -0.25 -13.80 9.59 84.03 0.81 -13.00 16 12 H 0.08 3.87 7.89 -2.91 -0.02 3.84 16 13 C -0.06 -3.28 4.90 84.86 0.42 -2.86 16 14 N -0.94 -57.60 11.20 21.65 0.24 -57.36 16 15 Si 0.97 45.61 29.59 68.60 2.03 47.64 16 16 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 17 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 18 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 19 C 0.11 4.39 6.12 86.22 0.53 4.91 16 20 C 0.10 3.20 3.37 30.53 0.10 3.30 16 21 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 22 O -0.56 -16.91 12.08 -148.98 -1.80 -18.71 16 23 C -0.04 -0.90 6.12 -17.01 -0.10 -1.00 16 24 C -0.10 -2.38 4.81 30.52 0.15 -2.24 16 25 C -0.13 -2.10 6.88 31.71 0.22 -1.88 16 26 C -0.12 -1.42 6.94 31.91 0.22 -1.19 16 27 C -0.09 -1.20 5.66 30.86 0.17 -1.03 16 28 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 29 H 0.09 1.01 7.22 -2.39 -0.02 0.99 16 30 H 0.06 1.03 6.70 -2.39 -0.02 1.01 16 31 H 0.41 10.37 6.36 -92.71 -0.59 9.79 16 32 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.06 2.65 7.61 -2.38 -0.02 2.63 16 34 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 35 H 0.05 3.22 6.03 -2.39 -0.01 3.20 16 36 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 37 H 0.08 2.80 7.93 -2.38 -0.02 2.78 16 38 H 0.02 0.86 8.14 -2.39 -0.02 0.85 16 39 H 0.39 8.66 9.08 -74.06 -0.67 7.99 16 40 H 0.06 1.79 7.67 -2.39 -0.02 1.77 16 41 H 0.06 1.68 7.68 -2.38 -0.02 1.67 16 42 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.10 0.93 7.69 -2.39 -0.02 0.91 16 Total: -1.00 -73.90 365.35 0.29 -73.62 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: -0.29 Total: 26.23 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 4.44 Total: 8.54 kcal Atomic # 7 Polarization: -109.33 SS G_CDS: -4.05 Total: -113.38 kcal Atomic # 8 Polarization: -40.80 SS G_CDS: -1.86 Total: -42.65 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -73.90 0.29 -73.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090182575.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.792 kcal (2) G-P(sol) polarization free energy of solvation -73.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds