Wall clock time and date at job start Fri Apr 10 2020 18:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.47099 * 119.99763 * 2 1 4 4 O 1.21619 * 120.00279 * 180.27339 * 3 2 1 5 5 N 1.34783 * 120.00177 * 359.97438 * 3 2 1 6 6 C 1.46497 * 120.00222 * 179.97438 * 5 3 2 7 7 H 1.09008 * 109.46112 * 325.02935 * 6 5 3 8 8 C 1.53036 * 109.46116 * 84.99770 * 6 5 3 9 9 C 1.53196 * 109.31058 * 58.65494 * 8 6 5 10 10 N 1.46933 * 108.77296 * 54.63503 * 9 8 6 11 11 C 1.36936 * 120.62852 * 126.41060 * 10 9 8 12 12 H 1.07999 * 120.00249 * 207.67204 * 11 10 9 13 13 C 1.38814 * 119.99827 * 27.67664 * 11 10 9 14 14 N 1.31620 * 120.00334 * 17.35740 * 13 11 10 15 15 Si 1.86802 * 119.99949 * 197.35147 * 13 11 10 16 16 H 1.48496 * 109.46812 * 90.00123 * 15 13 11 17 17 H 1.48494 * 109.47430 * 210.00247 * 15 13 11 18 18 H 1.48504 * 109.47026 * 330.00444 * 15 13 11 19 19 C 1.46919 * 118.73811 * 306.39189 * 10 9 8 20 20 C 1.53041 * 109.46001 * 205.07044 * 6 5 3 21 21 H 1.08998 * 109.49388 * 181.39077 * 20 6 5 22 22 O 1.42902 * 109.49829 * 61.29877 * 20 6 5 23 23 C 1.32988 * 120.00381 * 179.97438 * 2 1 3 24 24 C 1.51445 * 126.34354 * 179.68781 * 23 2 1 25 25 C 1.54277 * 106.85423 * 180.24476 * 24 23 2 26 26 C 1.54988 * 103.65998 * 23.48299 * 25 24 23 27 27 C 1.51841 * 126.34001 * 0.02562 * 23 2 1 28 28 H 1.09005 * 109.47329 * 90.00531 * 1 2 3 29 29 H 1.08998 * 109.47128 * 210.00016 * 1 2 3 30 30 H 1.09003 * 109.47745 * 329.99891 * 1 2 3 31 31 H 0.96994 * 119.99894 * 0.02562 * 5 3 2 32 32 H 1.09002 * 109.49911 * 178.60702 * 8 6 5 33 33 H 1.08997 * 109.49796 * 298.70868 * 8 6 5 34 34 H 1.08996 * 109.58804 * 174.41886 * 9 8 6 35 35 H 1.08997 * 109.58853 * 294.85339 * 9 8 6 36 36 H 0.96992 * 119.99872 * 179.97438 * 14 13 11 37 37 H 1.09004 * 109.58844 * 173.39318 * 19 10 9 38 38 H 1.08997 * 109.59008 * 293.67773 * 19 10 9 39 39 H 0.96697 * 113.99694 * 179.97438 * 22 20 6 40 40 H 1.08999 * 109.98897 * 299.73454 * 24 23 2 41 41 H 1.09008 * 109.98707 * 61.03763 * 24 23 2 42 42 H 1.08998 * 110.79510 * 264.85871 * 25 24 23 43 43 H 1.08995 * 110.55884 * 141.99438 * 25 24 23 44 44 H 1.08995 * 110.83419 * 204.49230 * 26 25 24 45 45 H 1.08999 * 111.00140 * 80.98938 * 26 25 24 46 46 H 1.09000 * 110.44640 * 274.92179 * 27 23 2 47 47 H 1.09005 * 110.44531 * 37.32480 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2424 1.2739 0.0000 4 8 3.4586 1.2741 -0.0050 5 7 1.5685 2.4412 -0.0005 6 6 2.3009 3.7099 0.0000 7 1 3.2114 3.6034 0.5898 8 6 2.6659 4.0886 -1.4371 9 6 1.3861 4.2039 -2.2712 10 7 0.4749 5.1488 -1.6110 11 6 -0.0429 6.2142 -2.2979 12 1 -0.3193 7.1146 -1.7694 13 6 -0.2126 6.1370 -3.6735 14 7 -0.2085 4.9649 -4.2723 15 14 -0.4469 7.6965 -4.6747 16 1 0.8767 8.2047 -5.1162 17 1 -1.2852 7.4000 -5.8640 18 1 -1.1184 8.7246 -3.8396 19 6 0.1296 4.9284 -0.2001 20 6 1.4234 4.8050 0.6108 21 1 1.9584 5.7543 0.5889 22 8 1.1085 4.4653 1.9627 23 6 2.1720 -1.1517 0.0005 24 6 3.6771 -1.3189 -0.0061 25 6 3.9586 -2.8358 -0.0089 26 6 2.6648 -3.4471 -0.6042 27 6 1.5627 -2.5425 0.0006 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3635 0.8900 0.5138 31 1 0.5985 2.4412 -0.0005 32 1 3.1892 5.0448 -1.4397 33 1 3.3099 3.3196 -1.8635 34 1 1.6315 4.5692 -3.2684 35 1 0.9086 3.2268 -2.3449 36 1 -0.3275 4.9110 -5.2334 37 1 -0.4541 5.7717 0.1693 38 1 -0.4525 4.0117 -0.1052 39 1 0.5538 5.1169 2.4129 40 1 4.0994 -0.8579 -0.8990 41 1 4.1064 -0.8642 0.8868 42 1 4.1233 -3.2007 1.0049 43 1 4.8164 -3.0647 -0.6412 44 1 2.5395 -4.4802 -0.2803 45 1 2.6662 -3.3811 -1.6922 46 1 1.3293 -2.8559 1.0181 47 1 0.6662 -2.5655 -0.6190 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090182576.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:56 Heat of formation + Delta-G solvation = -65.423469 kcal Electronic energy + Delta-G solvation = -26811.988655 eV Core-core repulsion = 23187.720712 eV Total energy + Delta-G solvation = -3624.267944 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.97657 -38.52237 -37.32145 -35.41866 -34.04276 -33.41418 -31.57594 -30.06801 -28.94538 -28.59476 -27.45252 -25.40804 -24.29170 -22.32960 -21.94738 -20.97543 -20.73924 -18.63791 -18.31355 -17.06674 -16.58777 -16.26743 -15.73012 -15.58434 -14.93804 -14.74295 -14.35872 -14.20729 -13.78247 -13.49915 -13.37718 -13.27478 -12.99279 -12.60885 -12.47087 -12.34028 -12.16613 -11.95354 -11.87358 -11.63157 -11.24348 -11.17374 -11.12588 -10.98540 -10.90429 -10.70081 -10.62164 -10.37686 -10.17822 -9.95239 -9.80381 -9.41070 -9.28350 -8.76305 -8.53158 -8.38133 -6.78021 -5.87047 -3.31284 1.57481 3.33379 3.40491 3.41365 3.60014 3.67431 4.36257 4.44045 4.54256 4.60709 4.91060 5.03671 5.14980 5.23942 5.28096 5.34328 5.36043 5.47625 5.49964 5.59856 5.66528 5.69662 5.71323 5.73483 5.78243 5.86930 5.99000 5.99749 6.00978 6.09747 6.19687 6.27573 6.29008 6.46114 6.51703 6.59019 6.66289 6.72658 6.73710 7.04477 7.29245 7.60104 7.71416 7.93259 8.03013 8.35405 8.69655 9.11148 9.73505 10.29051 11.20923 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.018705 B = 0.003676 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.565373 B = 7614.905515 C = 8239.389181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.178 4.178 3 C 0.554 3.446 4 O -0.553 6.553 5 N -0.701 5.701 6 C 0.166 3.834 7 H 0.077 0.923 8 C -0.153 4.153 9 C 0.172 3.828 10 N -0.587 5.587 11 C -0.260 4.260 12 H 0.067 0.933 13 C 0.006 3.994 14 N -0.899 5.899 15 Si 0.904 3.096 16 H -0.286 1.286 17 H -0.291 1.291 18 H -0.279 1.279 19 C 0.119 3.881 20 C 0.075 3.925 21 H 0.066 0.934 22 O -0.571 6.571 23 C -0.048 4.048 24 C -0.087 4.087 25 C -0.129 4.129 26 C -0.123 4.123 27 C -0.097 4.097 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.401 0.599 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.022 0.978 36 H 0.255 0.745 37 H 0.058 0.942 38 H 0.022 0.978 39 H 0.373 0.627 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.083 0.917 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.722 -12.224 9.670 15.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.181 4.181 3 C 0.343 3.657 4 O -0.433 6.433 5 N -0.352 5.352 6 C 0.062 3.938 7 H 0.095 0.905 8 C -0.193 4.193 9 C 0.047 3.953 10 N -0.311 5.311 11 C -0.389 4.389 12 H 0.084 0.916 13 C -0.193 4.193 14 N -0.542 5.542 15 Si 0.734 3.266 16 H -0.213 1.213 17 H -0.217 1.217 18 H -0.204 1.204 19 C -0.009 4.009 20 C 0.015 3.985 21 H 0.084 0.916 22 O -0.375 6.375 23 C -0.050 4.050 24 C -0.124 4.124 25 C -0.166 4.166 26 C -0.161 4.161 27 C -0.134 4.134 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.238 0.762 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.107 0.893 35 H 0.040 0.960 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.039 0.961 39 H 0.219 0.781 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.101 0.899 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.896 -12.743 9.342 16.274 hybrid contribution -1.016 1.384 -0.509 1.791 sum 2.879 -11.359 8.833 14.674 Atomic orbital electron populations 1.20718 0.90909 1.02569 1.02651 1.20825 0.96024 0.92121 1.09110 1.18193 0.87168 0.83977 0.76382 1.90720 1.13551 1.87784 1.51276 1.45863 1.10552 1.05093 1.73702 1.20794 0.94358 0.81828 0.96857 0.90454 1.22580 1.01164 1.00815 0.94729 1.20793 0.86089 0.92293 0.96150 1.44011 1.51423 1.29959 1.05700 1.19170 1.37998 0.91620 0.90097 0.91567 1.25047 0.99884 0.96482 0.97900 1.70035 1.52778 1.21974 1.09434 0.86270 0.77712 0.82837 0.79796 1.21338 1.21715 1.20420 1.21526 0.93271 0.98870 0.87199 1.22750 0.97885 0.96784 0.81128 0.91649 1.86491 1.73626 1.51438 1.25916 1.22603 0.96340 0.93376 0.92709 1.21214 0.92339 0.95030 1.03824 1.22466 0.97657 0.95674 1.00851 1.22506 0.94650 0.98414 1.00526 1.21527 0.98549 0.91754 1.01591 0.90867 0.91501 0.91626 0.76177 0.91610 0.91872 0.89280 0.96015 0.93501 0.92326 0.96068 0.78083 0.89699 0.89996 0.91632 0.91452 0.91315 0.91146 0.89907 0.90539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 9.16 36.00 0.33 -1.03 16 2 C -0.18 -2.61 6.00 -102.85 -0.62 -3.23 16 3 C 0.55 9.89 7.71 -12.66 -0.10 9.79 16 4 O -0.55 -11.10 13.77 5.26 0.07 -11.02 16 5 N -0.70 -12.38 4.10 -54.95 -0.23 -12.60 16 6 C 0.17 3.08 2.46 -67.89 -0.17 2.91 16 7 H 0.08 1.50 7.58 -51.92 -0.39 1.10 16 8 C -0.15 -3.07 5.77 -26.61 -0.15 -3.22 16 9 C 0.17 4.04 5.05 -3.70 -0.02 4.02 16 10 N -0.59 -13.96 2.99 -172.32 -0.52 -14.48 16 11 C -0.26 -6.83 9.59 -15.06 -0.14 -6.98 16 12 H 0.07 1.71 7.89 -52.49 -0.41 1.29 16 13 C 0.01 0.17 4.91 -17.43 -0.09 0.08 16 14 N -0.90 -25.38 11.19 55.49 0.62 -24.76 16 15 Si 0.90 21.15 29.59 -169.99 -5.03 16.12 16 16 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 C 0.12 2.31 5.84 -3.72 -0.02 2.29 16 20 C 0.08 1.30 3.36 -26.61 -0.09 1.21 16 21 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 22 O -0.57 -8.71 13.21 -35.23 -0.47 -9.17 16 23 C -0.05 -0.64 6.12 -100.24 -0.61 -1.25 16 24 C -0.09 -1.14 4.81 -26.85 -0.13 -1.27 16 25 C -0.13 -1.26 6.88 -25.01 -0.17 -1.43 16 26 C -0.12 -1.10 6.94 -24.69 -0.17 -1.27 16 27 C -0.10 -0.95 5.66 -26.33 -0.15 -1.10 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.07 0.67 7.22 -51.93 -0.37 0.29 16 30 H 0.06 0.80 6.70 -51.93 -0.35 0.45 16 31 H 0.40 6.85 4.97 -40.82 -0.20 6.65 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 33 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.09 2.37 6.04 -51.93 -0.31 2.05 16 35 H 0.02 0.54 7.74 -51.93 -0.40 0.13 16 36 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 37 H 0.06 1.09 7.93 -51.93 -0.41 0.68 16 38 H 0.02 0.42 6.65 -51.93 -0.35 0.07 16 39 H 0.37 4.06 9.08 45.56 0.41 4.48 16 40 H 0.08 1.26 7.67 -51.93 -0.40 0.86 16 41 H 0.08 1.18 7.69 -51.92 -0.40 0.78 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.08 0.70 7.68 -51.93 -0.40 0.30 16 LS Contribution 362.85 15.07 5.47 5.47 Total: -1.00 -30.74 362.85 -9.30 -40.04 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -6.93 Total: 10.87 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -2.30 Total: -0.47 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: -0.12 Total: -51.84 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.39 Total: -20.20 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.74 -9.30 -40.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090182576.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.379 kcal (2) G-P(sol) polarization free energy of solvation -30.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds