Wall clock time and date at job start Fri Apr 10 2020 18:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.47099 * 119.99763 * 2 1 4 4 O 1.21619 * 120.00279 * 180.27339 * 3 2 1 5 5 N 1.34783 * 120.00177 * 359.97438 * 3 2 1 6 6 C 1.46497 * 120.00222 * 179.97438 * 5 3 2 7 7 H 1.09008 * 109.46112 * 325.02935 * 6 5 3 8 8 C 1.53036 * 109.46116 * 84.99770 * 6 5 3 9 9 C 1.53196 * 109.31058 * 58.65494 * 8 6 5 10 10 N 1.46933 * 108.77296 * 54.63503 * 9 8 6 11 11 C 1.36936 * 120.62852 * 126.41060 * 10 9 8 12 12 H 1.07999 * 120.00249 * 207.67204 * 11 10 9 13 13 C 1.38814 * 119.99827 * 27.67664 * 11 10 9 14 14 N 1.31620 * 120.00334 * 17.35740 * 13 11 10 15 15 Si 1.86802 * 119.99949 * 197.35147 * 13 11 10 16 16 H 1.48496 * 109.46812 * 90.00123 * 15 13 11 17 17 H 1.48494 * 109.47430 * 210.00247 * 15 13 11 18 18 H 1.48504 * 109.47026 * 330.00444 * 15 13 11 19 19 C 1.46919 * 118.73811 * 306.39189 * 10 9 8 20 20 C 1.53041 * 109.46001 * 205.07044 * 6 5 3 21 21 H 1.08998 * 109.49388 * 181.39077 * 20 6 5 22 22 O 1.42902 * 109.49829 * 61.29877 * 20 6 5 23 23 C 1.32988 * 120.00381 * 179.97438 * 2 1 3 24 24 C 1.51445 * 126.34354 * 179.68781 * 23 2 1 25 25 C 1.54277 * 106.85423 * 180.24476 * 24 23 2 26 26 C 1.54988 * 103.65998 * 23.48299 * 25 24 23 27 27 C 1.51841 * 126.34001 * 0.02562 * 23 2 1 28 28 H 1.09005 * 109.47329 * 90.00531 * 1 2 3 29 29 H 1.08998 * 109.47128 * 210.00016 * 1 2 3 30 30 H 1.09003 * 109.47745 * 329.99891 * 1 2 3 31 31 H 0.96994 * 119.99894 * 0.02562 * 5 3 2 32 32 H 1.09002 * 109.49911 * 178.60702 * 8 6 5 33 33 H 1.08997 * 109.49796 * 298.70868 * 8 6 5 34 34 H 1.08996 * 109.58804 * 174.41886 * 9 8 6 35 35 H 1.08997 * 109.58853 * 294.85339 * 9 8 6 36 36 H 0.96992 * 119.99872 * 179.97438 * 14 13 11 37 37 H 1.09004 * 109.58844 * 173.39318 * 19 10 9 38 38 H 1.08997 * 109.59008 * 293.67773 * 19 10 9 39 39 H 0.96697 * 113.99694 * 179.97438 * 22 20 6 40 40 H 1.08999 * 109.98897 * 299.73454 * 24 23 2 41 41 H 1.09008 * 109.98707 * 61.03763 * 24 23 2 42 42 H 1.08998 * 110.79510 * 264.85871 * 25 24 23 43 43 H 1.08995 * 110.55884 * 141.99438 * 25 24 23 44 44 H 1.08995 * 110.83419 * 204.49230 * 26 25 24 45 45 H 1.08999 * 111.00140 * 80.98938 * 26 25 24 46 46 H 1.09000 * 110.44640 * 274.92179 * 27 23 2 47 47 H 1.09005 * 110.44531 * 37.32480 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2424 1.2739 0.0000 4 8 3.4586 1.2741 -0.0050 5 7 1.5685 2.4412 -0.0005 6 6 2.3009 3.7099 0.0000 7 1 3.2114 3.6034 0.5898 8 6 2.6659 4.0886 -1.4371 9 6 1.3861 4.2039 -2.2712 10 7 0.4749 5.1488 -1.6110 11 6 -0.0429 6.2142 -2.2979 12 1 -0.3193 7.1146 -1.7694 13 6 -0.2126 6.1370 -3.6735 14 7 -0.2085 4.9649 -4.2723 15 14 -0.4469 7.6965 -4.6747 16 1 0.8767 8.2047 -5.1162 17 1 -1.2852 7.4000 -5.8640 18 1 -1.1184 8.7246 -3.8396 19 6 0.1296 4.9284 -0.2001 20 6 1.4234 4.8050 0.6108 21 1 1.9584 5.7543 0.5889 22 8 1.1085 4.4653 1.9627 23 6 2.1720 -1.1517 0.0005 24 6 3.6771 -1.3189 -0.0061 25 6 3.9586 -2.8358 -0.0089 26 6 2.6648 -3.4471 -0.6042 27 6 1.5627 -2.5425 0.0006 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3635 0.8900 0.5138 31 1 0.5985 2.4412 -0.0005 32 1 3.1892 5.0448 -1.4397 33 1 3.3099 3.3196 -1.8635 34 1 1.6315 4.5692 -3.2684 35 1 0.9086 3.2268 -2.3449 36 1 -0.3275 4.9110 -5.2334 37 1 -0.4541 5.7717 0.1693 38 1 -0.4525 4.0117 -0.1052 39 1 0.5538 5.1169 2.4129 40 1 4.0994 -0.8579 -0.8990 41 1 4.1064 -0.8642 0.8868 42 1 4.1233 -3.2007 1.0049 43 1 4.8164 -3.0647 -0.6412 44 1 2.5395 -4.4802 -0.2803 45 1 2.6662 -3.3811 -1.6922 46 1 1.3293 -2.8559 1.0181 47 1 0.6662 -2.5655 -0.6190 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090182576.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:55 Heat of formation + Delta-G solvation = -85.613414 kcal Electronic energy + Delta-G solvation = -26812.864157 eV Core-core repulsion = 23187.720712 eV Total energy + Delta-G solvation = -3625.143445 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.36879 -39.80568 -38.51859 -36.96104 -35.61021 -34.57087 -33.34447 -31.73575 -30.19481 -29.83558 -28.40369 -27.23612 -25.46755 -23.96178 -23.64280 -22.30309 -21.56019 -20.25545 -19.54940 -18.74310 -18.00995 -17.48967 -17.01351 -16.83447 -16.62683 -16.07418 -15.85717 -15.69900 -15.37365 -14.94428 -14.63667 -14.48381 -14.22813 -14.02534 -13.73363 -13.54349 -13.34401 -13.27035 -13.23786 -13.01668 -12.79120 -12.76188 -12.36917 -12.18996 -12.15844 -11.99549 -11.92471 -11.86827 -11.84229 -11.46913 -11.29638 -11.04448 -10.64825 -10.51860 -10.08377 -9.63731 -8.72867 -7.89725 -5.36168 0.42899 1.47401 1.49887 1.57501 2.25556 2.34933 2.49167 3.13823 3.26440 3.48198 3.64458 3.75714 3.86737 3.98325 4.04722 4.14697 4.19703 4.22206 4.33011 4.36103 4.50852 4.51448 4.66359 4.70338 4.75495 4.82194 4.85250 4.88520 4.92239 4.97474 5.03122 5.06968 5.11501 5.14009 5.19320 5.21816 5.38726 5.41058 5.52657 5.55536 5.62078 5.67599 5.70597 6.34211 6.63952 6.87813 7.10758 7.30494 7.79498 8.31290 9.16516 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.018705 B = 0.003676 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.565373 B = 7614.905515 C = 8239.389181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.205 4.205 3 C 0.544 3.456 4 O -0.584 6.584 5 N -0.699 5.699 6 C 0.168 3.832 7 H 0.071 0.929 8 C -0.139 4.139 9 C 0.187 3.813 10 N -0.601 5.601 11 C -0.265 4.265 12 H 0.073 0.927 13 C -0.046 4.046 14 N -0.931 5.931 15 Si 0.966 3.034 16 H -0.288 1.288 17 H -0.297 1.297 18 H -0.266 1.266 19 C 0.119 3.881 20 C 0.096 3.904 21 H 0.071 0.929 22 O -0.571 6.571 23 C -0.040 4.040 24 C -0.092 4.092 25 C -0.123 4.123 26 C -0.119 4.119 27 C -0.094 4.094 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.404 0.596 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.002 0.998 36 H 0.250 0.750 37 H 0.071 0.929 38 H 0.023 0.977 39 H 0.395 0.605 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.095 0.905 45 H 0.066 0.934 46 H 0.104 0.896 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.928 -13.130 11.226 17.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.208 4.208 3 C 0.335 3.665 4 O -0.467 6.467 5 N -0.350 5.350 6 C 0.063 3.937 7 H 0.089 0.911 8 C -0.179 4.179 9 C 0.061 3.939 10 N -0.326 5.326 11 C -0.395 4.395 12 H 0.091 0.909 13 C -0.242 4.242 14 N -0.577 5.577 15 Si 0.795 3.205 16 H -0.215 1.215 17 H -0.224 1.224 18 H -0.190 1.190 19 C -0.007 4.007 20 C 0.035 3.965 21 H 0.089 0.911 22 O -0.378 6.378 23 C -0.042 4.042 24 C -0.129 4.129 25 C -0.160 4.160 26 C -0.157 4.157 27 C -0.131 4.131 28 H 0.086 0.914 29 H 0.112 0.888 30 H 0.080 0.920 31 H 0.242 0.758 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.020 0.980 36 H 0.059 0.941 37 H 0.089 0.911 38 H 0.041 0.959 39 H 0.245 0.755 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.098 0.902 43 H 0.092 0.908 44 H 0.114 0.886 45 H 0.085 0.915 46 H 0.122 0.878 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.075 -13.631 10.948 17.751 hybrid contribution -0.720 1.633 -0.919 2.008 sum 2.355 -11.998 10.029 15.814 Atomic orbital electron populations 1.20698 0.89040 1.03705 1.02670 1.20879 0.97296 0.90961 1.11618 1.18833 0.87096 0.85054 0.75516 1.90695 1.14931 1.88301 1.52786 1.45842 1.10597 1.04908 1.73679 1.20676 0.94762 0.82861 0.95443 0.91078 1.22377 0.99262 1.00781 0.95508 1.20457 0.87293 0.91005 0.95149 1.44169 1.51626 1.29504 1.07255 1.19529 1.36897 0.92515 0.90559 0.90895 1.25778 1.00479 0.98959 0.99011 1.70183 1.54504 1.23867 1.09143 0.85287 0.77263 0.79851 0.78140 1.21524 1.22379 1.19021 1.21663 0.94606 0.99401 0.85045 1.22340 0.96179 0.96228 0.81790 0.91144 1.86462 1.74252 1.52544 1.24520 1.23050 0.96517 0.94817 0.89851 1.21233 0.92520 0.97492 1.01674 1.22452 0.98668 0.92845 1.02076 1.22530 0.93317 0.99556 1.00257 1.21644 0.99045 0.89245 1.03143 0.91356 0.88811 0.92017 0.75828 0.91211 0.92732 0.92782 0.98001 0.94135 0.91080 0.95886 0.75474 0.92316 0.91811 0.90181 0.90845 0.88630 0.91542 0.87802 0.89357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.42 9.16 71.23 0.65 -1.77 16 2 C -0.20 -5.96 6.00 -18.71 -0.11 -6.08 16 3 C 0.54 19.88 7.71 86.57 0.67 20.55 16 4 O -0.58 -24.38 13.77 -4.09 -0.06 -24.44 16 5 N -0.70 -24.95 4.10 -446.00 -1.83 -26.78 16 6 C 0.17 6.22 2.46 45.02 0.11 6.33 16 7 H 0.07 2.76 7.58 -2.38 -0.02 2.75 16 8 C -0.14 -5.72 5.77 30.67 0.18 -5.55 16 9 C 0.19 9.03 5.05 86.36 0.44 9.47 16 10 N -0.60 -28.67 2.99 -699.10 -2.09 -30.76 16 11 C -0.27 -13.91 9.59 84.03 0.81 -13.10 16 12 H 0.07 3.67 7.89 -2.91 -0.02 3.64 16 13 C -0.05 -2.51 4.91 84.86 0.42 -2.10 16 14 N -0.93 -53.99 11.19 21.65 0.24 -53.75 16 15 Si 0.97 43.76 29.59 68.60 2.03 45.79 16 16 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 17 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 18 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 19 C 0.12 4.50 5.84 86.36 0.50 5.01 16 20 C 0.10 3.17 3.36 30.67 0.10 3.27 16 21 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 22 O -0.57 -16.08 13.21 -148.98 -1.97 -18.05 16 23 C -0.04 -1.03 6.12 -17.01 -0.10 -1.13 16 24 C -0.09 -2.43 4.81 30.52 0.15 -2.29 16 25 C -0.12 -2.19 6.88 31.71 0.22 -1.97 16 26 C -0.12 -1.77 6.94 31.91 0.22 -1.55 16 27 C -0.09 -1.57 5.66 30.85 0.17 -1.39 16 28 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.09 1.63 7.22 -2.39 -0.02 1.61 16 30 H 0.06 1.45 6.70 -2.39 -0.02 1.44 16 31 H 0.40 13.82 4.97 -92.71 -0.46 13.35 16 32 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 33 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.05 2.99 6.04 -2.39 -0.01 2.98 16 35 H 0.00 0.10 7.74 -2.39 -0.02 0.08 16 36 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 37 H 0.07 2.50 7.93 -2.39 -0.02 2.48 16 38 H 0.02 0.88 6.65 -2.39 -0.02 0.87 16 39 H 0.40 7.37 9.08 -74.06 -0.67 6.70 16 40 H 0.06 1.84 7.67 -2.39 -0.02 1.83 16 41 H 0.06 1.89 7.69 -2.38 -0.02 1.88 16 42 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.09 1.32 7.68 -2.38 -0.02 1.31 16 Total: -1.00 -67.80 362.85 0.59 -67.22 By element: Atomic # 1 Polarization: 33.21 SS G_CDS: -0.16 Total: 33.05 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: 4.42 Total: 7.71 kcal Atomic # 7 Polarization: -107.61 SS G_CDS: -3.68 Total: -111.29 kcal Atomic # 8 Polarization: -40.46 SS G_CDS: -2.02 Total: -42.49 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -67.80 0.59 -67.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090182576.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.398 kcal (2) G-P(sol) polarization free energy of solvation -67.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds