Wall clock time and date at job start Fri Apr 10 2020 18:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86800 * 119.99493 * 2 1 4 4 H 1.48496 * 109.47311 * 269.99992 * 3 2 1 5 5 H 1.48503 * 109.47138 * 30.00040 * 3 2 1 6 6 H 1.48499 * 109.46764 * 149.99946 * 3 2 1 7 7 C 1.38811 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99429 * 197.35079 * 7 2 1 9 9 N 1.36935 * 119.99982 * 17.35388 * 7 2 1 10 10 C 1.46924 * 120.62831 * 207.67160 * 9 7 2 11 11 C 1.53188 * 108.77865 * 233.63321 * 10 9 7 12 12 C 1.53047 * 109.31113 * 305.36562 * 11 10 9 13 13 H 1.08997 * 109.45809 * 301.36109 * 12 11 10 14 14 N 1.46495 * 109.45862 * 181.38739 * 12 11 10 15 15 C 1.34770 * 120.00478 * 85.00203 * 14 12 11 16 16 O 1.21616 * 119.99691 * 359.97438 * 15 14 12 17 17 C 1.47103 * 120.00297 * 180.02562 * 15 14 12 18 18 C 1.31566 * 119.85186 * 179.72559 * 17 15 14 19 19 C 1.51412 * 120.28950 * 179.79459 * 18 17 15 20 20 C 1.53034 * 108.75467 * 288.79749 * 19 18 17 21 21 C 1.51781 * 110.81096 * 85.64736 * 20 19 18 22 22 C 1.51783 * 113.84515 * 293.06314 * 21 20 19 23 23 C 1.51409 * 119.85455 * 359.97438 * 17 15 14 24 24 C 1.53043 * 109.53540 * 61.36614 * 12 11 10 25 25 H 1.08994 * 109.49811 * 58.61625 * 24 12 11 26 26 O 1.42900 * 109.49429 * 178.68201 * 24 12 11 27 27 C 1.46918 * 120.63320 * 27.69830 * 9 7 2 28 28 H 0.96995 * 120.00288 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.58595 * 113.84304 * 10 9 7 30 30 H 1.09002 * 109.58679 * 353.42542 * 10 9 7 31 31 H 1.08996 * 109.50019 * 65.31770 * 11 10 9 32 32 H 1.09005 * 109.50123 * 185.41877 * 11 10 9 33 33 H 0.97013 * 120.00004 * 265.00108 * 14 12 11 34 34 H 1.07989 * 119.85551 * 0.02562 * 18 17 15 35 35 H 1.08994 * 109.58181 * 168.98280 * 19 18 17 36 36 H 1.08999 * 109.62949 * 48.63414 * 19 18 17 37 37 H 1.08998 * 109.21341 * 325.30847 * 20 19 18 38 38 H 1.08998 * 109.17731 * 205.96450 * 20 19 18 39 39 H 1.08996 * 108.61267 * 171.92813 * 21 20 19 40 40 H 1.09004 * 108.60967 * 54.18499 * 21 20 19 41 41 H 1.09004 * 109.20319 * 306.59170 * 22 21 20 42 42 H 1.08999 * 109.21032 * 187.28396 * 22 21 20 43 43 H 1.09001 * 109.61601 * 11.29417 * 23 17 15 44 44 H 1.08999 * 109.62371 * 131.84375 * 23 17 15 45 45 H 0.96698 * 114.00069 * 179.97438 * 26 24 12 46 46 H 1.09005 * 109.58906 * 6.58002 * 27 9 7 47 47 H 1.09004 * 109.58868 * 246.15556 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 3.0535 -1.2231 0.2795 9 7 1.3725 -2.3612 -0.3527 10 6 1.8197 -3.6546 0.1819 11 6 2.0754 -4.6099 -0.9879 12 6 0.8199 -4.6903 -1.8595 13 1 -0.0192 -5.0367 -1.2563 14 7 1.0496 -5.6285 -2.9608 15 6 0.8483 -6.9481 -2.7751 16 8 0.4764 -7.3600 -1.6929 17 6 1.0796 -7.8903 -3.8809 18 6 0.8873 -9.1784 -3.6947 19 6 1.1179 -10.1565 -4.8272 20 6 0.0045 -9.9817 -5.8626 21 6 0.3489 -8.8756 -6.8432 22 6 0.3854 -7.4922 -6.2197 23 6 1.5431 -7.3739 -5.2266 24 6 0.5017 -3.3052 -2.4275 25 1 1.3502 -2.9476 -3.0108 26 8 -0.6527 -3.3873 -3.2657 27 6 0.2282 -2.3352 -1.2738 28 1 -0.4850 0.8400 0.0004 29 1 1.0473 -4.0689 0.8299 30 1 2.7402 -3.5169 0.7493 31 1 2.9092 -4.2397 -1.5844 32 1 2.3148 -5.6011 -0.6027 33 1 1.3467 -5.3000 -3.8240 34 1 0.5601 -9.5394 -2.7309 35 1 1.1005 -11.1750 -4.4396 36 1 2.0838 -9.9581 -5.2916 37 1 -0.9248 -9.7310 -5.3512 38 1 -0.1272 -10.9162 -6.4080 39 1 -0.3912 -8.8771 -7.6433 40 1 1.3262 -9.0873 -7.2772 41 1 -0.5543 -7.3089 -5.6986 42 1 0.5098 -6.7476 -7.0060 43 1 1.8410 -6.3294 -5.1349 44 1 2.3871 -7.9687 -5.5759 45 1 -0.9129 -2.5437 -3.6605 46 1 0.0986 -1.3269 -1.6672 47 1 -0.6740 -2.6419 -0.7446 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090222208.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:02 Heat of formation + Delta-G solvation = -88.683253 kcal Electronic energy + Delta-G solvation = -26477.973127 eV Core-core repulsion = 22852.696564 eV Total energy + Delta-G solvation = -3625.276564 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.36998 -39.79994 -38.67802 -36.92263 -35.89850 -34.14911 -33.43333 -32.79260 -31.13867 -30.51594 -27.33283 -26.48970 -25.22697 -24.13887 -23.51740 -22.14790 -21.28673 -21.16437 -19.48526 -18.69191 -18.14677 -18.14417 -17.50644 -16.76969 -16.18168 -15.91653 -15.76876 -15.61034 -15.36138 -15.05501 -15.01740 -14.49451 -14.43001 -14.05193 -13.92423 -13.83927 -13.55616 -13.36943 -13.07891 -12.90544 -12.67434 -12.58929 -12.54037 -12.13907 -12.07662 -12.00904 -11.89556 -11.58102 -11.51318 -11.41502 -11.30468 -11.02712 -10.78075 -10.62005 -10.19329 -9.87306 -8.79247 -7.92112 -5.39775 0.45163 1.48510 1.49404 1.58924 2.16193 2.29959 2.48627 3.08386 3.25185 3.60239 3.66397 3.76279 3.87835 4.00633 4.02462 4.11984 4.14328 4.24924 4.27621 4.38167 4.42001 4.48866 4.60357 4.66388 4.77689 4.82306 4.85955 4.89547 4.92282 4.98085 5.00697 5.12538 5.24916 5.28024 5.29335 5.30798 5.35199 5.44646 5.52341 5.53654 5.57436 5.62234 5.68899 6.31321 6.58004 6.80066 7.07983 7.24252 7.75098 8.28680 9.14712 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.029331 B = 0.003074 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.389123 B = 9105.147354 C = 9495.404031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.048 4.048 3 Si 0.972 3.028 4 H -0.280 1.280 5 H -0.297 1.297 6 H -0.269 1.269 7 C -0.267 4.267 8 H 0.073 0.927 9 N -0.604 5.604 10 C 0.142 3.858 11 C -0.122 4.122 12 C 0.168 3.832 13 H 0.051 0.949 14 N -0.699 5.699 15 C 0.543 3.457 16 O -0.597 6.597 17 C -0.188 4.188 18 C -0.068 4.068 19 C -0.089 4.089 20 C -0.114 4.114 21 C -0.118 4.118 22 C -0.115 4.115 23 C -0.074 4.074 24 C 0.093 3.907 25 H 0.067 0.933 26 O -0.573 6.573 27 C 0.157 3.843 28 H 0.252 0.748 29 H 0.007 0.993 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.410 0.590 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.047 0.953 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.042 0.958 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.099 0.901 45 H 0.392 0.608 46 H 0.073 0.927 47 H -0.007 1.007 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.118 -17.120 -17.272 24.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.244 4.244 3 Si 0.800 3.200 4 H -0.206 1.206 5 H -0.224 1.224 6 H -0.194 1.194 7 C -0.397 4.397 8 H 0.091 0.909 9 N -0.329 5.329 10 C 0.016 3.984 11 C -0.162 4.162 12 C 0.063 3.937 13 H 0.070 0.930 14 N -0.349 5.349 15 C 0.333 3.667 16 O -0.480 6.480 17 C -0.191 4.191 18 C -0.088 4.088 19 C -0.126 4.126 20 C -0.151 4.151 21 C -0.155 4.155 22 C -0.152 4.152 23 C -0.111 4.111 24 C 0.032 3.968 25 H 0.085 0.915 26 O -0.380 6.380 27 C 0.030 3.970 28 H 0.061 0.939 29 H 0.025 0.975 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.249 0.751 34 H 0.122 0.878 35 H 0.105 0.895 36 H 0.113 0.887 37 H 0.066 0.934 38 H 0.104 0.896 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.061 0.939 42 H 0.098 0.902 43 H 0.088 0.912 44 H 0.117 0.883 45 H 0.241 0.759 46 H 0.091 0.909 47 H 0.011 0.989 Dipole moment (debyes) X Y Z Total from point charges 3.786 -17.863 -16.353 24.512 hybrid contribution -0.182 1.951 0.414 2.003 sum 3.604 -15.912 -15.938 22.808 Atomic orbital electron populations 1.70196 1.06754 1.26135 1.54982 1.25863 0.96050 1.01687 1.00795 0.85200 0.77971 0.79067 0.77782 1.20646 1.22425 1.19351 1.19568 0.93240 0.85535 1.41310 0.90886 1.44256 1.35679 1.02390 1.50555 1.21030 0.97853 0.85681 0.93817 1.22200 0.96950 0.99522 0.97543 1.20666 0.97447 0.87458 0.88144 0.93039 1.45870 1.67844 1.05942 1.15285 1.19109 0.76170 0.83050 0.88372 1.90745 1.49463 1.78892 1.28851 1.21251 1.07996 0.94107 0.95716 1.23526 0.91439 0.94106 0.99685 1.21011 1.00443 0.97804 0.93373 1.21273 0.97501 0.99815 0.96520 1.21142 1.02975 0.93351 0.98050 1.21287 0.97384 0.98403 0.98164 1.20798 0.99058 1.01397 0.89893 1.22546 0.87954 0.94359 0.91909 0.91515 1.86402 1.47813 1.37956 1.65851 1.21220 0.88308 0.98118 0.89306 0.93887 0.97491 0.91323 0.90552 0.91358 0.75145 0.87842 0.89491 0.88721 0.93413 0.89569 0.91527 0.90520 0.93901 0.90198 0.91198 0.88274 0.75856 0.90897 0.98851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.28 11.19 21.65 0.24 -54.04 16 2 C -0.05 -2.63 4.91 84.86 0.42 -2.21 16 3 Si 0.97 43.50 29.59 68.60 2.03 45.53 16 4 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.30 -13.55 7.11 99.48 0.71 -12.85 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 7 C -0.27 -14.35 9.59 84.03 0.81 -13.55 16 8 H 0.07 3.80 7.89 -2.91 -0.02 3.77 16 9 N -0.60 -30.33 2.99 -699.12 -2.09 -32.42 16 10 C 0.14 6.20 6.52 86.36 0.56 6.76 16 11 C -0.12 -4.49 5.65 30.67 0.17 -4.32 16 12 C 0.17 6.33 2.12 45.02 0.10 6.42 16 13 H 0.05 2.33 7.57 -2.39 -0.02 2.31 16 14 N -0.70 -21.64 4.88 -446.01 -2.17 -23.82 16 15 C 0.54 17.80 7.71 86.57 0.67 18.47 16 16 O -0.60 -24.83 15.84 -4.08 -0.06 -24.89 16 17 C -0.19 -4.41 5.10 -17.89 -0.09 -4.50 16 18 C -0.07 -1.43 8.94 25.34 0.23 -1.20 16 19 C -0.09 -1.14 5.60 30.09 0.17 -0.97 16 20 C -0.11 -1.35 5.66 30.20 0.17 -1.18 16 21 C -0.12 -1.29 5.27 29.79 0.16 -1.14 16 22 C -0.11 -1.69 5.66 30.19 0.17 -1.52 16 23 C -0.07 -1.19 5.37 30.07 0.16 -1.03 16 24 C 0.09 3.52 3.14 30.67 0.10 3.61 16 25 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 26 O -0.57 -19.56 13.16 -148.98 -1.96 -21.52 16 27 C 0.16 7.56 4.94 86.36 0.43 7.99 16 28 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 29 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.07 2.84 7.93 -2.39 -0.02 2.82 16 31 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 33 H 0.41 10.36 6.38 -92.70 -0.59 9.77 16 34 H 0.10 2.62 7.44 -2.92 -0.02 2.60 16 35 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.09 0.95 6.76 -2.39 -0.02 0.93 16 37 H 0.05 0.75 7.86 -2.39 -0.02 0.73 16 38 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.08 0.62 7.88 -2.38 -0.02 0.60 16 41 H 0.04 0.83 7.85 -2.38 -0.02 0.82 16 42 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.07 1.10 5.99 -2.39 -0.01 1.08 16 44 H 0.10 1.19 6.75 -2.39 -0.02 1.18 16 45 H 0.39 10.49 9.08 -74.06 -0.67 9.82 16 46 H 0.07 3.80 6.04 -2.38 -0.01 3.78 16 47 H -0.01 -0.36 8.14 -2.38 -0.02 -0.38 16 Total: -1.00 -70.44 362.15 -0.10 -70.55 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: -0.29 Total: 28.99 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 4.21 Total: 11.62 kcal Atomic # 7 Polarization: -106.25 SS G_CDS: -4.03 Total: -110.28 kcal Atomic # 8 Polarization: -44.38 SS G_CDS: -2.03 Total: -46.41 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -70.44 -0.10 -70.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090222208.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.137 kcal (2) G-P(sol) polarization free energy of solvation -70.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds