Wall clock time and date at job start Fri Apr 10 2020 18:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00412 * 2 1 4 4 H 1.48497 * 109.47281 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46823 * 300.00140 * 3 2 1 6 6 H 1.48503 * 109.46796 * 59.99794 * 3 2 1 7 7 C 1.38814 * 119.99570 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99572 * 162.75622 * 7 2 1 9 9 N 1.36939 * 120.00481 * 343.02962 * 7 2 1 10 10 C 1.46927 * 120.63012 * 151.77767 * 9 7 2 11 11 C 1.53618 * 108.54374 * 126.37257 * 10 9 7 12 12 C 1.53043 * 109.24352 * 54.85236 * 11 10 9 13 13 H 1.08997 * 109.45019 * 58.52510 * 12 11 10 14 14 N 1.46497 * 109.46051 * 178.49381 * 12 11 10 15 15 C 1.34779 * 119.99708 * 275.06614 * 14 12 11 16 16 O 1.21610 * 120.00071 * 0.02562 * 15 14 12 17 17 C 1.47108 * 120.00050 * 179.97438 * 15 14 12 18 18 C 1.31554 * 119.85534 * 179.72592 * 17 15 14 19 19 C 1.51406 * 120.29406 * 179.79640 * 18 17 15 20 20 C 1.53034 * 108.75837 * 288.80218 * 19 18 17 21 21 C 1.51783 * 110.80818 * 85.64231 * 20 19 18 22 22 C 1.51780 * 113.84464 * 293.06283 * 21 20 19 23 23 C 1.51406 * 119.85089 * 0.02562 * 17 15 14 24 24 C 1.53044 * 109.53800 * 298.51375 * 12 11 10 25 25 H 1.09003 * 109.49636 * 301.41001 * 24 12 11 26 26 O 1.42902 * 109.49562 * 181.31628 * 24 12 11 27 27 C 1.46926 * 120.63016 * 332.05819 * 9 7 2 28 28 H 0.96995 * 119.99600 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.58235 * 246.20187 * 10 9 7 30 30 H 1.09001 * 109.58777 * 6.62358 * 10 9 7 31 31 H 1.09001 * 109.63463 * 294.86774 * 11 10 9 32 32 H 1.09001 * 109.46096 * 174.74003 * 11 10 9 33 33 H 0.96998 * 120.00559 * 95.06873 * 14 12 11 34 34 H 1.08002 * 119.85219 * 0.02562 * 18 17 15 35 35 H 1.09005 * 109.58646 * 168.98433 * 19 18 17 36 36 H 1.09009 * 109.47544 * 48.55077 * 19 18 17 37 37 H 1.09001 * 109.20688 * 325.30565 * 20 19 18 38 38 H 1.08993 * 109.17376 * 205.96520 * 20 19 18 39 39 H 1.08999 * 108.60679 * 171.93450 * 21 20 19 40 40 H 1.09002 * 108.49523 * 54.11036 * 21 20 19 41 41 H 1.09005 * 109.20866 * 306.59627 * 22 21 20 42 42 H 1.09002 * 109.20589 * 187.28573 * 22 21 20 43 43 H 1.09000 * 109.61931 * 11.29220 * 23 17 15 44 44 H 1.09004 * 109.62056 * 131.65603 * 23 17 15 45 45 H 0.96704 * 113.99682 * 180.16119 * 26 24 12 46 46 H 1.09004 * 109.58335 * 353.37286 * 27 9 7 47 47 H 1.08996 * 109.58482 * 113.79346 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0538 -1.2234 -0.2767 9 7 1.3702 -2.3622 0.3472 10 6 1.8130 -3.6530 -0.1975 11 6 2.0680 -4.6152 0.9725 12 6 0.8105 -4.6979 1.8409 13 1 -0.0278 -5.0400 1.2341 14 7 1.0363 -5.6421 2.9380 15 6 0.8345 -6.9606 2.7447 16 8 0.4654 -7.3665 1.6593 17 6 1.0617 -7.9088 3.8462 18 6 0.8586 -9.1946 3.6558 19 6 1.0938 -10.1797 4.7812 20 6 2.5997 -10.2954 5.0274 21 6 3.0763 -9.2093 5.9745 22 6 2.9830 -7.8083 5.3982 23 6 1.5216 -7.3998 5.1959 24 6 0.4934 -3.3152 2.4153 25 1 1.3413 -2.9617 3.0018 26 8 -0.6631 -3.3996 3.2505 27 6 0.2240 -2.3389 1.2660 28 1 -0.4849 0.8400 -0.0004 29 1 1.0383 -4.0604 -0.8471 30 1 2.7330 -3.5138 -0.7652 31 1 2.9011 -4.2494 1.5727 32 1 2.3070 -5.6049 0.5832 33 1 1.3309 -5.3184 3.8037 34 1 0.5262 -9.5493 2.6914 35 1 0.6923 -11.1544 4.5035 36 1 0.6014 -9.8225 5.6858 37 1 3.1266 -10.1998 4.0780 38 1 2.8176 -11.2710 5.4617 39 1 4.1150 -9.4087 6.2379 40 1 2.4738 -9.2530 6.8819 41 1 3.4996 -7.7800 4.4387 42 1 3.4602 -7.1066 6.0824 43 1 1.4375 -6.3135 5.2255 44 1 0.9045 -7.8362 5.9814 45 1 -0.9239 -2.5572 3.6473 46 1 0.0952 -1.3324 1.6642 47 1 -0.6775 -2.6414 0.7332 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090222211.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:13 Heat of formation + Delta-G solvation = -66.970540 kcal Electronic energy + Delta-G solvation = -26475.277478 eV Core-core repulsion = 22850.942449 eV Total energy + Delta-G solvation = -3624.335030 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.11610 -38.51958 -37.49982 -35.25334 -34.36980 -32.84294 -32.37322 -31.75393 -29.41263 -28.81789 -26.01645 -25.27741 -24.22604 -22.55391 -21.91883 -20.94602 -20.47403 -19.62427 -18.17889 -17.34100 -16.80070 -16.58271 -16.11357 -15.20531 -15.00726 -14.75429 -14.67444 -14.08980 -13.85548 -13.80982 -13.67393 -13.40249 -13.23277 -13.11927 -12.66431 -12.18615 -12.16817 -11.97662 -11.83272 -11.66013 -11.33778 -11.20929 -10.96446 -10.91753 -10.85609 -10.77280 -10.66909 -10.39809 -10.18697 -10.01835 -9.78737 -9.49570 -9.31475 -9.15195 -8.68170 -8.51388 -6.77884 -5.87270 -3.31019 1.46330 3.31428 3.40263 3.42430 3.45642 3.49352 4.39792 4.41311 4.57297 4.58817 4.62123 4.79679 4.82189 4.99973 5.13630 5.25597 5.29792 5.37642 5.40959 5.46040 5.51788 5.52780 5.62585 5.63220 5.80388 5.84927 5.88398 5.93184 5.93259 6.01895 6.10837 6.11828 6.25800 6.37474 6.46724 6.47625 6.56106 6.71601 6.90161 6.92766 7.12670 7.46114 7.72116 7.83324 8.10714 8.35994 8.51515 9.11162 9.73894 10.30452 11.21044 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.027298 B = 0.003061 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.454841 B = 9146.160061 C = 9259.932770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.255 4.255 8 H 0.069 0.931 9 N -0.589 5.589 10 C 0.145 3.855 11 C -0.138 4.138 12 C 0.161 3.839 13 H 0.087 0.913 14 N -0.710 5.710 15 C 0.549 3.451 16 O -0.550 6.550 17 C -0.173 4.173 18 C -0.079 4.079 19 C -0.095 4.095 20 C -0.114 4.114 21 C -0.118 4.118 22 C -0.116 4.116 23 C -0.081 4.081 24 C 0.072 3.928 25 H 0.051 0.949 26 O -0.573 6.573 27 C 0.149 3.851 28 H 0.255 0.745 29 H 0.024 0.976 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.396 0.604 34 H 0.125 0.875 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.375 0.625 46 H 0.094 0.906 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.172 -16.448 13.911 21.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.384 4.384 8 H 0.087 0.913 9 N -0.313 5.313 10 C 0.018 3.982 11 C -0.179 4.179 12 C 0.057 3.943 13 H 0.105 0.895 14 N -0.360 5.360 15 C 0.337 3.663 16 O -0.429 6.429 17 C -0.176 4.176 18 C -0.099 4.099 19 C -0.132 4.132 20 C -0.152 4.152 21 C -0.156 4.156 22 C -0.154 4.154 23 C -0.119 4.119 24 C 0.011 3.989 25 H 0.069 0.931 26 O -0.377 6.377 27 C 0.022 3.978 28 H 0.065 0.935 29 H 0.042 0.958 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.232 0.768 34 H 0.143 0.857 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.222 0.778 46 H 0.112 0.888 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 3.850 -17.183 12.948 21.857 hybrid contribution 0.444 1.729 0.488 1.851 sum 4.294 -15.454 13.436 20.924 Atomic orbital electron populations 1.70041 1.05268 1.25568 1.53722 1.25095 0.95328 0.98574 1.00703 0.86203 0.79393 0.83745 0.77332 1.20177 1.21627 1.21532 1.19258 0.92785 0.84579 1.41798 0.91307 1.44036 1.35552 1.01963 1.49781 1.21032 0.98217 0.86312 0.92640 1.22478 0.96627 1.00164 0.98600 1.20986 0.98630 0.86978 0.87661 0.89489 1.46080 1.68123 1.06336 1.15421 1.18378 0.77330 0.82674 0.87896 1.90769 1.47367 1.78469 1.26333 1.21277 1.05782 0.94710 0.95855 1.23282 0.93296 0.93615 0.99673 1.20942 0.96780 0.98315 0.97185 1.21262 0.94962 0.98657 1.00295 1.21136 1.01256 0.94479 0.98712 1.21309 0.95850 0.96488 1.01711 1.20776 0.96421 1.00790 0.93869 1.22973 0.86962 0.95531 0.93387 0.93120 1.86423 1.48174 1.36641 1.66485 1.21411 0.89776 0.98136 0.88526 0.93542 0.95797 0.92108 0.92058 0.91887 0.76848 0.85737 0.90865 0.90455 0.91621 0.91572 0.92199 0.92194 0.91613 0.91443 0.91224 0.90382 0.77798 0.88816 0.95255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.55 11.18 55.49 0.62 -24.93 16 2 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 3 Si 0.90 21.12 29.59 -169.99 -5.03 16.09 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.25 -6.82 9.58 -15.06 -0.14 -6.97 16 8 H 0.07 1.81 7.89 -52.48 -0.41 1.40 16 9 N -0.59 -14.53 2.99 -172.06 -0.51 -15.04 16 10 C 0.14 3.10 6.54 -3.49 -0.02 3.08 16 11 C -0.14 -2.57 5.67 -26.39 -0.15 -2.72 16 12 C 0.16 3.01 2.11 -67.89 -0.14 2.87 16 13 H 0.09 1.88 7.58 -51.93 -0.39 1.49 16 14 N -0.71 -11.21 4.88 -54.95 -0.27 -11.48 16 15 C 0.55 8.99 7.71 -12.66 -0.10 8.89 16 16 O -0.55 -11.06 15.84 5.27 0.08 -10.98 16 17 C -0.17 -2.13 5.10 -102.53 -0.52 -2.65 16 18 C -0.08 -0.88 8.94 -35.81 -0.32 -1.20 16 19 C -0.10 -0.74 5.61 -27.52 -0.15 -0.90 16 20 C -0.11 -0.82 5.66 -27.33 -0.15 -0.98 16 21 C -0.12 -0.82 5.27 -27.97 -0.15 -0.97 16 22 C -0.12 -0.96 5.66 -27.31 -0.15 -1.11 16 23 C -0.08 -0.76 5.36 -27.50 -0.15 -0.91 16 24 C 0.07 1.37 3.14 -26.61 -0.08 1.29 16 25 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 26 O -0.57 -9.93 13.16 -35.23 -0.46 -10.40 16 27 C 0.15 3.46 4.93 -3.71 -0.02 3.44 16 28 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 1.25 7.93 -51.93 -0.41 0.84 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.40 5.35 6.38 -40.82 -0.26 5.09 16 34 H 0.12 1.55 7.44 -52.49 -0.39 1.16 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.56 6.74 -51.92 -0.35 0.21 16 37 H 0.07 0.54 7.86 -51.93 -0.41 0.13 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.38 7.87 -51.93 -0.41 -0.03 16 41 H 0.07 0.63 7.85 -51.93 -0.41 0.22 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.65 5.99 -51.93 -0.31 0.34 16 44 H 0.08 0.65 6.76 -51.93 -0.35 0.29 16 45 H 0.38 5.19 9.08 45.56 0.41 5.61 16 46 H 0.09 2.37 6.04 -51.93 -0.31 2.06 16 47 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 362.19 15.07 5.46 5.46 Total: -1.00 -31.63 362.19 -9.41 -41.04 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -6.95 Total: 9.12 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -2.35 Total: 1.13 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: -0.16 Total: -51.45 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.38 Total: -21.37 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.63 -9.41 -41.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090222211.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.935 kcal (2) G-P(sol) polarization free energy of solvation -31.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds