Wall clock time and date at job start Fri Apr 10 2020 18:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 119.99996 * 2 1 4 4 H 1.48503 * 109.47026 * 274.06813 * 3 2 1 5 5 H 1.48495 * 109.47320 * 34.07142 * 3 2 1 6 6 H 1.48501 * 109.47026 * 154.07172 * 3 2 1 7 7 C 1.38814 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99966 * 197.50125 * 7 2 1 9 9 N 1.36937 * 120.00213 * 17.49469 * 7 2 1 10 10 C 1.46929 * 120.62918 * 27.98613 * 9 7 2 11 11 C 1.53192 * 108.77388 * 126.36847 * 10 9 7 12 12 C 1.53104 * 109.32983 * 54.63862 * 11 10 9 13 13 H 1.09005 * 109.45409 * 58.64697 * 12 11 10 14 14 N 1.46502 * 109.50655 * 178.62969 * 12 11 10 15 15 C 1.34775 * 120.00070 * 275.05250 * 14 12 11 16 16 O 1.21282 * 119.99961 * 359.97438 * 15 14 12 17 17 C 1.50693 * 120.00119 * 180.02562 * 15 14 12 18 18 C 1.55930 * 115.92300 * 175.91351 * 17 15 14 19 19 C 1.56523 * 103.72432 * 199.69369 * 18 17 15 20 20 C 1.55937 * 104.82556 * 359.59540 * 19 18 17 21 21 C 1.55928 * 104.49487 * 289.99261 * 20 19 18 22 22 C 1.54579 * 104.64383 * 70.27558 * 21 20 19 23 23 C 1.56947 * 116.22858 * 56.92111 * 17 15 14 24 24 C 1.53047 * 109.50228 * 298.65461 * 12 11 10 25 25 H 1.08995 * 109.49673 * 301.38202 * 24 12 11 26 26 O 1.42904 * 109.49406 * 181.31417 * 24 12 11 27 27 C 1.46924 * 120.63256 * 207.96697 * 9 7 2 28 28 H 0.97000 * 120.00035 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.58486 * 246.15764 * 10 9 7 30 30 H 1.08999 * 109.58601 * 6.58221 * 10 9 7 31 31 H 1.09005 * 109.49484 * 174.58457 * 11 10 9 32 32 H 1.08994 * 109.49716 * 294.65571 * 11 10 9 33 33 H 0.97003 * 119.99923 * 95.05158 * 14 12 11 34 34 H 1.09001 * 110.39705 * 318.75569 * 18 17 15 35 35 H 1.08998 * 110.40283 * 81.17027 * 18 17 15 36 36 H 1.09001 * 110.08820 * 240.85780 * 19 18 17 37 37 H 1.09001 * 110.54724 * 118.55539 * 19 18 17 38 38 H 1.09000 * 115.91944 * 161.11283 * 20 19 18 39 39 H 1.08998 * 110.39962 * 311.48468 * 21 20 19 40 40 H 1.08996 * 110.50145 * 189.11796 * 21 20 19 41 41 H 1.08998 * 110.40354 * 241.20566 * 22 21 20 42 42 H 1.09005 * 110.40199 * 118.79069 * 22 21 20 43 43 H 1.09000 * 112.02645 * 296.35992 * 23 17 15 44 44 H 1.09000 * 112.02357 * 62.87768 * 23 17 15 45 45 H 0.96701 * 113.99341 * 180.02562 * 26 24 12 46 46 H 1.08999 * 109.58843 * 113.84128 * 27 9 7 47 47 H 1.09003 * 109.70323 * 353.48566 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4116 2.0960 -1.3966 5 1 1.4933 2.6263 0.7843 6 1 3.5881 1.4168 0.6122 7 6 2.0102 -1.2022 -0.0005 8 1 3.0528 -1.2239 0.2807 9 7 1.3731 -2.3605 -0.3576 10 6 0.2347 -2.3331 -1.2861 11 6 0.5144 -3.3038 -2.4377 12 6 0.8272 -4.6899 -1.8676 13 1 -0.0163 -5.0354 -1.2698 14 7 1.0632 -5.6292 -2.9669 15 6 0.0231 -6.2489 -3.5587 16 8 -1.1084 -6.0294 -3.1810 17 6 0.2659 -7.2155 -4.6891 18 6 -0.9938 -7.9525 -5.2382 19 6 -0.4019 -9.1976 -5.9793 20 6 1.1423 -9.0689 -5.8050 21 6 1.5353 -7.8506 -6.6953 22 6 0.9549 -6.6232 -5.9563 23 6 1.2201 -8.4219 -4.3772 24 6 2.0770 -4.6103 -0.9878 25 1 2.9151 -4.2413 -1.5789 26 8 2.3866 -5.9099 -0.4804 27 6 1.8151 -3.6544 0.1803 28 1 -0.4850 0.8400 0.0004 29 1 -0.6713 -2.6385 -0.7625 30 1 0.1090 -1.3248 -1.6805 31 1 -0.3623 -3.3653 -3.0827 32 1 1.3669 -2.9469 -3.0155 33 1 1.9682 -5.8050 -3.2687 34 1 -1.6436 -8.2569 -4.4178 35 1 -1.5348 -7.3124 -5.9352 36 1 -0.6690 -9.1665 -7.0356 37 1 -0.7601 -10.1204 -5.5229 38 1 1.7175 -9.9809 -5.9646 39 1 1.0893 -7.9439 -7.6854 40 1 2.6194 -7.7691 -6.7739 41 1 0.2235 -6.1130 -6.5831 42 1 1.7539 -5.9393 -5.6697 43 1 2.2330 -8.0927 -4.1455 44 1 0.8180 -9.0705 -3.5989 45 1 3.1691 -5.9342 0.0872 46 1 1.0380 -4.0675 0.8233 47 1 2.7315 -3.5198 0.7548 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090363044.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:16 Heat of formation + Delta-G solvation = -70.336857 kcal Electronic energy + Delta-G solvation = -26841.769405 eV Core-core repulsion = 23217.288401 eV Total energy + Delta-G solvation = -3624.481004 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.81342 -39.03622 -37.61045 -35.40291 -34.26838 -31.99225 -30.58846 -30.34131 -29.46301 -28.47637 -27.86329 -25.16250 -22.77712 -22.32584 -22.18106 -21.21999 -19.84593 -19.58511 -18.65011 -17.38331 -16.94898 -16.52280 -15.95035 -15.30777 -15.22157 -14.96791 -14.64469 -14.24749 -13.93201 -13.69563 -13.23689 -13.00876 -12.77604 -12.66735 -12.35948 -12.25990 -12.08265 -11.90936 -11.57144 -11.46073 -11.22494 -11.18543 -11.09331 -11.05079 -10.89156 -10.67145 -10.55028 -10.32872 -10.24779 -10.11959 -9.95251 -9.76044 -9.67639 -9.33127 -8.71025 -8.44438 -6.77888 -5.85538 -3.29890 2.82588 3.33471 3.40042 3.40945 3.42657 4.20614 4.25932 4.35031 4.37149 4.52267 4.85158 4.94845 5.00417 5.09347 5.19073 5.24246 5.27476 5.30149 5.32659 5.47241 5.52258 5.56585 5.56877 5.74638 5.75907 5.78573 5.84797 5.86972 5.96650 5.97837 6.05407 6.10194 6.12738 6.18161 6.34339 6.48305 6.54668 6.67332 6.77294 6.91043 7.28693 7.59875 7.72441 7.81476 7.91911 8.37001 8.52700 9.12429 9.74875 10.31025 11.23012 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.025741 B = 0.003278 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.508385 B = 8538.926803 C = 8781.638109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.005 3.995 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.260 4.260 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.172 3.828 11 C -0.146 4.146 12 C 0.163 3.837 13 H 0.087 0.913 14 N -0.712 5.712 15 C 0.540 3.460 16 O -0.541 6.541 17 C -0.102 4.102 18 C -0.096 4.096 19 C -0.121 4.121 20 C -0.104 4.104 21 C -0.119 4.119 22 C -0.108 4.108 23 C -0.107 4.107 24 C 0.080 3.920 25 H 0.055 0.945 26 O -0.571 6.571 27 C 0.121 3.879 28 H 0.256 0.744 29 H 0.024 0.976 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.395 0.605 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.101 0.899 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.373 0.627 46 H 0.029 0.971 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.856 -17.142 -12.017 21.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.194 4.194 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.390 4.390 8 H 0.085 0.915 9 N -0.312 5.312 10 C 0.045 3.955 11 C -0.186 4.186 12 C 0.059 3.941 13 H 0.105 0.895 14 N -0.361 5.361 15 C 0.326 3.674 16 O -0.417 6.417 17 C -0.105 4.105 18 C -0.134 4.134 19 C -0.158 4.158 20 C -0.122 4.122 21 C -0.156 4.156 22 C -0.146 4.146 23 C -0.145 4.145 24 C 0.020 3.980 25 H 0.073 0.927 26 O -0.375 6.375 27 C -0.007 4.007 28 H 0.066 0.934 29 H 0.042 0.958 30 H 0.110 0.890 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.228 0.772 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.119 0.881 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.219 0.781 46 H 0.047 0.953 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.379 -16.970 -12.066 21.095 hybrid contribution 1.333 1.065 0.194 1.717 sum 4.712 -15.905 -11.872 20.399 Atomic orbital electron populations 1.70042 1.05302 1.25738 1.53077 1.25078 0.95292 0.98550 1.00468 0.86250 0.79123 0.83560 0.77655 1.21374 1.21690 1.20356 1.19177 0.92754 0.84702 1.42340 0.91517 1.44041 1.36399 1.01047 1.49706 1.20823 0.88782 0.98328 0.87523 1.22606 1.00975 0.94330 1.00716 1.21006 0.97481 0.89303 0.86340 0.89526 1.46031 1.09144 1.44730 1.36192 1.19670 0.84926 0.80263 0.82560 1.90697 1.22568 1.64098 1.64382 1.22945 0.98243 0.95267 0.94025 1.22728 0.95387 0.95706 0.99622 1.22980 0.94739 0.97903 1.00190 1.23552 0.96225 0.97506 0.94938 1.22623 1.00483 0.94125 0.98378 1.22600 0.99716 0.97466 0.94836 1.23514 0.98577 0.95429 0.96976 1.22771 0.96038 0.83080 0.96159 0.92686 1.86488 1.51067 1.30280 1.69653 1.21521 0.98774 0.87425 0.92948 0.93433 0.95806 0.88958 0.91980 0.92405 0.77184 0.90878 0.91323 0.91668 0.91704 0.88133 0.91518 0.91595 0.91130 0.91412 0.90813 0.90643 0.78067 0.95345 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.88 11.22 55.49 0.62 -25.26 16 2 C 0.01 0.15 4.90 -17.43 -0.09 0.06 16 3 Si 0.90 21.29 29.59 -169.99 -5.03 16.26 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 7 C -0.26 -6.97 9.58 -15.06 -0.14 -7.11 16 8 H 0.07 1.73 7.89 -52.48 -0.41 1.32 16 9 N -0.59 -14.44 2.99 -172.32 -0.52 -14.96 16 10 C 0.17 4.14 5.31 -3.71 -0.02 4.12 16 11 C -0.15 -2.91 5.66 -26.58 -0.15 -3.06 16 12 C 0.16 2.97 2.12 -67.85 -0.14 2.83 16 13 H 0.09 1.84 7.58 -51.93 -0.39 1.45 16 14 N -0.71 -10.86 4.92 -53.73 -0.26 -11.12 16 15 C 0.54 8.64 7.18 -10.99 -0.08 8.56 16 16 O -0.54 -10.92 16.05 5.56 0.09 -10.83 16 17 C -0.10 -1.20 1.26 -150.39 -0.19 -1.39 16 18 C -0.10 -1.09 5.63 -23.27 -0.13 -1.22 16 19 C -0.12 -1.02 6.26 -23.26 -0.15 -1.16 16 20 C -0.10 -0.81 5.19 -85.35 -0.44 -1.26 16 21 C -0.12 -0.92 6.21 -24.34 -0.15 -1.07 16 22 C -0.11 -1.07 5.86 -24.33 -0.14 -1.21 16 23 C -0.11 -1.04 6.11 -22.46 -0.14 -1.18 16 24 C 0.08 1.37 3.14 -26.61 -0.08 1.29 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 26 O -0.57 -8.52 13.16 -35.23 -0.46 -8.99 16 27 C 0.12 2.47 6.14 -3.71 -0.02 2.45 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.09 2.47 6.06 -51.93 -0.31 2.15 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.39 5.06 8.60 -40.82 -0.35 4.71 16 34 H 0.07 0.93 7.99 -51.93 -0.42 0.52 16 35 H 0.07 0.77 7.80 -51.93 -0.41 0.37 16 36 H 0.06 0.49 7.83 -51.93 -0.41 0.09 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.48 7.83 -51.93 -0.41 0.07 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.71 7.80 -51.93 -0.41 0.31 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.37 3.98 9.08 45.56 0.41 4.40 16 46 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.06 1.15 7.94 -51.93 -0.41 0.73 16 LS Contribution 364.10 15.07 5.49 5.49 Total: -1.00 -31.69 364.10 -9.44 -41.13 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -7.30 Total: 7.63 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -2.07 Total: 0.66 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: -0.16 Total: -51.34 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.37 Total: -19.82 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.69 -9.44 -41.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090363044.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.209 kcal (2) G-P(sol) polarization free energy of solvation -31.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds