Wall clock time and date at job start Fri Apr 10 2020 18:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 119.99996 * 2 1 4 4 H 1.48503 * 109.47026 * 274.06813 * 3 2 1 5 5 H 1.48495 * 109.47320 * 34.07142 * 3 2 1 6 6 H 1.48501 * 109.47026 * 154.07172 * 3 2 1 7 7 C 1.38814 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99966 * 197.50125 * 7 2 1 9 9 N 1.36937 * 120.00213 * 17.49469 * 7 2 1 10 10 C 1.46929 * 120.62918 * 27.98613 * 9 7 2 11 11 C 1.53192 * 108.77388 * 126.36847 * 10 9 7 12 12 C 1.53104 * 109.32983 * 54.63862 * 11 10 9 13 13 H 1.09005 * 109.45409 * 58.64697 * 12 11 10 14 14 N 1.46502 * 109.50655 * 178.62969 * 12 11 10 15 15 C 1.34775 * 120.00070 * 275.05250 * 14 12 11 16 16 O 1.21282 * 119.99961 * 359.97438 * 15 14 12 17 17 C 1.50693 * 120.00119 * 180.02562 * 15 14 12 18 18 C 1.55930 * 115.92300 * 175.91351 * 17 15 14 19 19 C 1.56523 * 103.72432 * 199.69369 * 18 17 15 20 20 C 1.55937 * 104.82556 * 359.59540 * 19 18 17 21 21 C 1.55928 * 104.49487 * 289.99261 * 20 19 18 22 22 C 1.54579 * 104.64383 * 70.27558 * 21 20 19 23 23 C 1.56947 * 116.22858 * 56.92111 * 17 15 14 24 24 C 1.53047 * 109.50228 * 298.65461 * 12 11 10 25 25 H 1.08995 * 109.49673 * 301.38202 * 24 12 11 26 26 O 1.42904 * 109.49406 * 181.31417 * 24 12 11 27 27 C 1.46924 * 120.63256 * 207.96697 * 9 7 2 28 28 H 0.97000 * 120.00035 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.58486 * 246.15764 * 10 9 7 30 30 H 1.08999 * 109.58601 * 6.58221 * 10 9 7 31 31 H 1.09005 * 109.49484 * 174.58457 * 11 10 9 32 32 H 1.08994 * 109.49716 * 294.65571 * 11 10 9 33 33 H 0.97003 * 119.99923 * 95.05158 * 14 12 11 34 34 H 1.09001 * 110.39705 * 318.75569 * 18 17 15 35 35 H 1.08998 * 110.40283 * 81.17027 * 18 17 15 36 36 H 1.09001 * 110.08820 * 240.85780 * 19 18 17 37 37 H 1.09001 * 110.54724 * 118.55539 * 19 18 17 38 38 H 1.09000 * 115.91944 * 161.11283 * 20 19 18 39 39 H 1.08998 * 110.39962 * 311.48468 * 21 20 19 40 40 H 1.08996 * 110.50145 * 189.11796 * 21 20 19 41 41 H 1.08998 * 110.40354 * 241.20566 * 22 21 20 42 42 H 1.09005 * 110.40199 * 118.79069 * 22 21 20 43 43 H 1.09000 * 112.02645 * 296.35992 * 23 17 15 44 44 H 1.09000 * 112.02357 * 62.87768 * 23 17 15 45 45 H 0.96701 * 113.99341 * 180.02562 * 26 24 12 46 46 H 1.08999 * 109.58843 * 113.84128 * 27 9 7 47 47 H 1.09003 * 109.70323 * 353.48566 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4116 2.0960 -1.3966 5 1 1.4933 2.6263 0.7843 6 1 3.5881 1.4168 0.6122 7 6 2.0102 -1.2022 -0.0005 8 1 3.0528 -1.2239 0.2807 9 7 1.3731 -2.3605 -0.3576 10 6 0.2347 -2.3331 -1.2861 11 6 0.5144 -3.3038 -2.4377 12 6 0.8272 -4.6899 -1.8676 13 1 -0.0163 -5.0354 -1.2698 14 7 1.0632 -5.6292 -2.9669 15 6 0.0231 -6.2489 -3.5587 16 8 -1.1084 -6.0294 -3.1810 17 6 0.2659 -7.2155 -4.6891 18 6 -0.9938 -7.9525 -5.2382 19 6 -0.4019 -9.1976 -5.9793 20 6 1.1423 -9.0689 -5.8050 21 6 1.5353 -7.8506 -6.6953 22 6 0.9549 -6.6232 -5.9563 23 6 1.2201 -8.4219 -4.3772 24 6 2.0770 -4.6103 -0.9878 25 1 2.9151 -4.2413 -1.5789 26 8 2.3866 -5.9099 -0.4804 27 6 1.8151 -3.6544 0.1803 28 1 -0.4850 0.8400 0.0004 29 1 -0.6713 -2.6385 -0.7625 30 1 0.1090 -1.3248 -1.6805 31 1 -0.3623 -3.3653 -3.0827 32 1 1.3669 -2.9469 -3.0155 33 1 1.9682 -5.8050 -3.2687 34 1 -1.6436 -8.2569 -4.4178 35 1 -1.5348 -7.3124 -5.9352 36 1 -0.6690 -9.1665 -7.0356 37 1 -0.7601 -10.1204 -5.5229 38 1 1.7175 -9.9809 -5.9646 39 1 1.0893 -7.9439 -7.6854 40 1 2.6194 -7.7691 -6.7739 41 1 0.2235 -6.1130 -6.5831 42 1 1.7539 -5.9393 -5.6697 43 1 2.2330 -8.0927 -4.1455 44 1 0.8180 -9.0705 -3.5989 45 1 3.1691 -5.9342 0.0872 46 1 1.0380 -4.0675 0.8233 47 1 2.7315 -3.5198 0.7548 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090363044.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:15 Heat of formation + Delta-G solvation = -92.788765 kcal Electronic energy + Delta-G solvation = -26842.742993 eV Core-core repulsion = 23217.288401 eV Total energy + Delta-G solvation = -3625.454592 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.80465 -40.34112 -39.02164 -36.99413 -35.77927 -33.81972 -31.99481 -31.22840 -30.69251 -29.95154 -28.68326 -26.99494 -24.37013 -23.78437 -23.05209 -22.61913 -21.34317 -20.54386 -19.74836 -18.89337 -18.15369 -18.02683 -17.38316 -16.81657 -16.20816 -16.07711 -15.88568 -15.70180 -15.56211 -15.22385 -14.93292 -14.53989 -13.96456 -13.74096 -13.64563 -13.48536 -13.31891 -13.20935 -12.99230 -12.74753 -12.67965 -12.41435 -12.18616 -12.13231 -12.06558 -11.96543 -11.90507 -11.84835 -11.79924 -11.42804 -11.26669 -11.10745 -10.84250 -10.74670 -10.58342 -10.04543 -8.79109 -7.91866 -5.39895 1.47900 1.49204 1.57952 1.58705 2.13211 2.48104 3.10286 3.25163 3.41452 3.49656 3.55292 3.60694 3.82819 3.92447 4.03407 4.19885 4.24987 4.25967 4.35756 4.37348 4.43550 4.50176 4.53287 4.61026 4.64108 4.70282 4.81826 4.84336 4.93098 4.98714 5.01747 5.09617 5.09813 5.15248 5.19783 5.25098 5.33369 5.34639 5.38554 5.47906 5.48230 5.57419 5.63287 6.31854 6.57688 6.87621 7.07475 7.27466 7.75691 8.28950 9.15634 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.025741 B = 0.003278 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.508385 B = 8538.926803 C = 8781.638109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.051 4.051 3 Si 0.972 3.028 4 H -0.285 1.285 5 H -0.298 1.298 6 H -0.262 1.262 7 C -0.267 4.267 8 H 0.078 0.922 9 N -0.603 5.603 10 C 0.181 3.819 11 C -0.128 4.128 12 C 0.169 3.831 13 H 0.050 0.950 14 N -0.698 5.698 15 C 0.534 3.466 16 O -0.592 6.592 17 C -0.109 4.109 18 C -0.102 4.102 19 C -0.115 4.115 20 C -0.090 4.090 21 C -0.112 4.112 22 C -0.107 4.107 23 C -0.105 4.105 24 C 0.104 3.896 25 H 0.075 0.925 26 O -0.570 6.570 27 C 0.117 3.883 28 H 0.251 0.749 29 H -0.011 1.011 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.412 0.588 34 H 0.047 0.953 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.127 0.873 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.065 0.935 45 H 0.396 0.604 46 H 0.009 0.991 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.214 -18.923 -13.735 24.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.247 4.247 3 Si 0.800 3.200 4 H -0.212 1.212 5 H -0.225 1.225 6 H -0.186 1.186 7 C -0.396 4.396 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.055 3.945 11 C -0.168 4.168 12 C 0.064 3.936 13 H 0.069 0.931 14 N -0.348 5.348 15 C 0.322 3.678 16 O -0.472 6.472 17 C -0.112 4.112 18 C -0.140 4.140 19 C -0.152 4.152 20 C -0.108 4.108 21 C -0.149 4.149 22 C -0.145 4.145 23 C -0.143 4.143 24 C 0.043 3.957 25 H 0.093 0.907 26 O -0.377 6.377 27 C -0.009 4.009 28 H 0.060 0.940 29 H 0.007 0.993 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.248 0.752 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.145 0.855 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.105 0.895 44 H 0.084 0.916 45 H 0.246 0.754 46 H 0.027 0.973 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.813 -18.800 -13.787 24.289 hybrid contribution 0.232 1.567 0.818 1.783 sum 7.045 -17.233 -12.969 22.689 Atomic orbital electron populations 1.70216 1.07015 1.26081 1.54946 1.25913 0.95982 1.01941 1.00828 0.85180 0.78284 0.79107 0.77417 1.21178 1.22540 1.18646 1.19597 0.93322 0.85516 1.41185 0.90396 1.44248 1.36129 1.02190 1.50184 1.20525 0.87885 0.97617 0.88515 1.22319 1.01088 0.94526 0.98874 1.20638 0.97180 0.88635 0.87144 0.93127 1.45800 1.10062 1.43775 1.35147 1.20513 0.84075 0.80209 0.82981 1.90675 1.24659 1.65802 1.66072 1.22928 0.99553 0.95342 0.93366 1.22765 0.95109 0.97136 0.98982 1.22975 0.95379 0.96322 1.00529 1.23604 0.95646 0.98438 0.93149 1.22621 1.01447 0.92500 0.98376 1.22637 0.99475 0.98687 0.93689 1.23556 0.98309 0.94191 0.98250 1.22283 0.95672 0.83231 0.94514 0.90719 1.86460 1.52681 1.28363 1.70218 1.21697 0.98685 0.86264 0.94299 0.94028 0.99296 0.91923 0.92825 0.91038 0.75190 0.93424 0.92088 0.90249 0.91114 0.85494 0.90439 0.89893 0.91883 0.91018 0.89520 0.91597 0.75373 0.97253 0.90427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.05 11.22 21.65 0.24 -55.80 16 2 C -0.05 -2.82 4.90 84.86 0.42 -2.40 16 3 Si 0.97 44.02 29.59 68.60 2.03 46.05 16 4 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 7 C -0.27 -14.23 9.58 84.03 0.81 -13.43 16 8 H 0.08 3.93 7.89 -2.91 -0.02 3.90 16 9 N -0.60 -30.02 2.99 -699.08 -2.09 -32.12 16 10 C 0.18 9.16 5.31 86.36 0.46 9.62 16 11 C -0.13 -5.22 5.66 30.69 0.17 -5.05 16 12 C 0.17 6.23 2.12 45.04 0.10 6.33 16 13 H 0.05 2.25 7.58 -2.38 -0.02 2.24 16 14 N -0.70 -20.72 4.92 -442.29 -2.18 -22.89 16 15 C 0.53 17.26 7.18 87.66 0.63 17.89 16 16 O -0.59 -25.17 16.05 -3.04 -0.05 -25.22 16 17 C -0.11 -2.46 1.26 -49.52 -0.06 -2.53 16 18 C -0.10 -2.28 5.63 32.84 0.18 -2.09 16 19 C -0.11 -1.65 6.26 32.84 0.21 -1.45 16 20 C -0.09 -1.06 5.19 -7.38 -0.04 -1.10 16 21 C -0.11 -1.29 6.21 32.15 0.20 -1.09 16 22 C -0.11 -1.87 5.86 32.15 0.19 -1.68 16 23 C -0.11 -1.77 6.11 33.36 0.20 -1.57 16 24 C 0.10 3.38 3.14 30.67 0.10 3.48 16 25 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 26 O -0.57 -15.51 13.16 -148.98 -1.96 -17.47 16 27 C 0.12 4.73 6.14 86.36 0.53 5.26 16 28 H 0.25 14.54 8.31 -92.71 -0.77 13.76 16 29 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 30 H 0.06 3.53 6.06 -2.39 -0.01 3.51 16 31 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 32 H 0.07 2.72 8.14 -2.39 -0.02 2.71 16 33 H 0.41 9.51 8.60 -92.71 -0.80 8.71 16 34 H 0.05 1.28 7.99 -2.39 -0.02 1.26 16 35 H 0.06 1.41 7.80 -2.39 -0.02 1.39 16 36 H 0.08 0.95 7.83 -2.39 -0.02 0.93 16 37 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.08 0.78 7.83 -2.39 -0.02 0.76 16 40 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.06 1.19 7.80 -2.39 -0.02 1.17 16 42 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 43 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.40 7.00 9.08 -74.06 -0.67 6.33 16 46 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 47 H 0.08 2.83 7.94 -2.39 -0.02 2.81 16 Total: -1.00 -72.42 364.10 -0.42 -72.84 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: -0.50 Total: 24.42 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 4.09 Total: 10.19 kcal Atomic # 7 Polarization: -106.79 SS G_CDS: -4.03 Total: -110.81 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: -2.01 Total: -42.69 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -72.42 -0.42 -72.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090363044.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.949 kcal (2) G-P(sol) polarization free energy of solvation -72.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds