Wall clock time and date at job start Fri Apr 10 2020 18:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 119.99728 * 2 1 4 4 H 1.48498 * 109.47266 * 269.99665 * 3 2 1 5 5 H 1.48499 * 109.47300 * 29.99978 * 3 2 1 6 6 H 1.48503 * 109.46929 * 150.00096 * 3 2 1 7 7 C 1.38808 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99303 * 197.37143 * 7 2 1 9 9 N 1.36938 * 120.00391 * 17.36490 * 7 2 1 10 10 C 1.46924 * 120.63197 * 207.68617 * 9 7 2 11 11 C 1.53191 * 108.77764 * 233.58904 * 10 9 7 12 12 C 1.53041 * 109.30942 * 305.36561 * 11 10 9 13 13 H 1.08996 * 109.46177 * 301.34335 * 12 11 10 14 14 N 1.46505 * 109.45546 * 181.38515 * 12 11 10 15 15 C 1.34768 * 119.99926 * 84.93654 * 14 12 11 16 16 O 1.21280 * 120.00283 * 359.97438 * 15 14 12 17 17 C 1.50701 * 119.99942 * 179.97438 * 15 14 12 18 18 C 1.55936 * 115.92112 * 62.05671 * 17 15 14 19 19 C 1.56526 * 103.72210 * 160.30148 * 18 17 15 20 20 C 1.55927 * 104.83002 * 0.40542 * 19 18 17 21 21 C 1.55931 * 104.49506 * 70.00200 * 20 19 18 22 22 C 1.54575 * 104.64524 * 289.72532 * 21 20 19 23 23 C 1.56953 * 116.22601 * 181.04162 * 17 15 14 24 24 C 1.53037 * 109.53743 * 61.36647 * 12 11 10 25 25 H 1.09005 * 109.49958 * 178.67850 * 24 12 11 26 26 O 1.42905 * 109.50143 * 58.61726 * 24 12 11 27 27 C 1.46926 * 120.62801 * 27.66925 * 9 7 2 28 28 H 0.96997 * 119.99884 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.58490 * 113.79503 * 10 9 7 30 30 H 1.09006 * 109.58888 * 353.37688 * 10 9 7 31 31 H 1.08994 * 109.49443 * 185.41216 * 11 10 9 32 32 H 1.08992 * 109.52280 * 65.33224 * 11 10 9 33 33 H 0.96998 * 119.99618 * 264.93116 * 14 12 11 34 34 H 1.08998 * 110.39907 * 278.82531 * 18 17 15 35 35 H 1.09003 * 110.40006 * 41.24567 * 18 17 15 36 36 H 1.08997 * 110.54646 * 241.43913 * 19 18 17 37 37 H 1.09004 * 110.08386 * 119.13806 * 19 18 17 38 38 H 1.08994 * 115.92696 * 198.88702 * 20 19 18 39 39 H 1.09006 * 110.39950 * 170.93615 * 21 20 19 40 40 H 1.08997 * 110.40128 * 48.52369 * 21 20 19 41 41 H 1.09001 * 110.40524 * 241.20797 * 22 21 20 42 42 H 1.08997 * 110.40430 * 118.79250 * 22 21 20 43 43 H 1.08994 * 112.03161 * 297.12827 * 23 17 15 44 44 H 1.09008 * 112.02336 * 63.64894 * 23 17 15 45 45 H 0.96698 * 113.99770 * 180.02562 * 26 24 12 46 46 H 1.08998 * 109.58831 * 6.61938 * 27 9 7 47 47 H 1.09001 * 109.58059 * 246.20275 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0533 -1.2235 0.2787 9 7 1.3724 -2.3609 -0.3550 10 6 1.8193 -3.6548 0.1786 11 6 2.0743 -4.6094 -0.9920 12 6 0.8185 -4.6887 -1.8632 13 1 -0.0205 -5.0355 -1.2601 14 7 1.0476 -5.6263 -2.9653 15 6 0.8472 -6.9461 -2.7799 16 8 0.4776 -7.3576 -1.7006 17 6 1.0823 -7.9105 -3.9138 18 6 2.5407 -7.9759 -4.4618 19 6 2.5957 -9.3507 -5.2080 20 6 1.1683 -9.9548 -5.0374 21 6 0.2552 -9.0550 -5.9251 22 6 0.1982 -7.7014 -5.1810 23 6 0.7975 -9.4234 -3.6079 24 6 0.5007 -3.3032 -2.4302 25 1 -0.3801 -3.3649 -3.0693 26 8 1.6130 -2.8341 -3.1950 27 6 0.2279 -2.3338 -1.2759 28 1 -0.4850 0.8400 -0.0004 29 1 1.0469 -4.0692 0.8266 30 1 2.7401 -3.5179 0.7457 31 1 2.3135 -5.6008 -0.6074 32 1 2.9082 -4.2397 -1.5885 33 1 1.3435 -5.2972 -3.8284 34 1 2.7230 -7.1551 -5.1554 35 1 3.2568 -7.9468 -3.6405 36 1 3.3411 -10.0032 -4.7534 37 1 2.8188 -9.1950 -6.2635 38 1 1.0828 -11.0289 -5.2012 39 1 -0.7424 -9.4873 -6.0045 40 1 0.6944 -8.9267 -6.9144 41 1 -0.8273 -7.4680 -4.8946 42 1 0.6095 -6.9074 -5.8044 43 1 1.4540 -9.8139 -2.8304 44 1 -0.2528 -9.6033 -3.3779 45 1 1.4811 -1.9591 -3.5849 46 1 0.0985 -1.3252 -1.6685 47 1 -0.6743 -2.6404 -0.7465 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090363047.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:26 Heat of formation + Delta-G solvation = -68.743071 kcal Electronic energy + Delta-G solvation = -26935.632648 eV Core-core repulsion = 23311.220755 eV Total energy + Delta-G solvation = -3624.411892 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.82725 -39.04579 -37.61213 -34.79283 -34.25575 -32.12617 -30.62007 -30.30287 -29.15276 -28.77531 -27.87001 -25.13908 -22.78623 -22.43580 -22.12181 -21.14204 -19.81490 -19.48979 -18.72735 -17.38524 -16.97606 -16.00666 -15.58576 -15.48435 -15.22395 -15.07093 -14.63492 -14.19340 -13.85260 -13.75193 -13.25378 -12.95772 -12.80372 -12.74285 -12.37445 -12.11413 -11.99891 -11.97241 -11.50522 -11.31828 -11.24509 -11.18041 -11.10566 -11.04774 -10.82118 -10.59165 -10.56194 -10.46778 -10.17110 -10.15212 -10.03580 -9.74149 -9.48033 -9.16275 -8.65856 -8.49168 -6.69068 -5.81958 -3.22574 2.78553 3.35046 3.40990 3.43550 3.45111 4.14301 4.24571 4.31210 4.47457 4.79547 4.86589 4.91267 4.95709 5.12807 5.17174 5.19914 5.21649 5.30907 5.40520 5.47006 5.50486 5.59057 5.62375 5.71436 5.72843 5.80802 5.85835 5.96430 5.99610 6.01755 6.04009 6.07592 6.09544 6.22810 6.31501 6.47979 6.57738 6.79897 6.89037 6.99782 7.17341 7.42655 7.76982 7.82549 8.23772 8.42282 8.48322 9.17418 9.80568 10.37503 11.26785 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.033009 B = 0.003172 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.055205 B = 8825.154429 C = 8940.857938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.002 4.002 3 Si 0.904 3.096 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.242 4.242 8 H 0.066 0.934 9 N -0.583 5.583 10 C 0.148 3.852 11 C -0.135 4.135 12 C 0.162 3.838 13 H 0.089 0.911 14 N -0.714 5.714 15 C 0.538 3.462 16 O -0.542 6.542 17 C -0.103 4.103 18 C -0.107 4.107 19 C -0.118 4.118 20 C -0.107 4.107 21 C -0.118 4.118 22 C -0.108 4.108 23 C -0.093 4.093 24 C 0.074 3.926 25 H 0.042 0.958 26 O -0.560 6.560 27 C 0.145 3.855 28 H 0.253 0.747 29 H 0.019 0.981 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.401 0.599 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.101 0.899 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.375 0.625 46 H 0.096 0.904 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.421 -16.366 -13.767 21.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.199 4.199 3 Si 0.734 3.266 4 H -0.215 1.215 5 H -0.219 1.219 6 H -0.205 1.205 7 C -0.372 4.372 8 H 0.084 0.916 9 N -0.305 5.305 10 C 0.021 3.979 11 C -0.176 4.176 12 C 0.058 3.942 13 H 0.107 0.893 14 N -0.364 5.364 15 C 0.324 3.676 16 O -0.420 6.420 17 C -0.106 4.106 18 C -0.145 4.145 19 C -0.155 4.155 20 C -0.125 4.125 21 C -0.156 4.156 22 C -0.146 4.146 23 C -0.131 4.131 24 C 0.012 3.988 25 H 0.060 0.940 26 O -0.365 6.365 27 C 0.018 3.982 28 H 0.063 0.937 29 H 0.037 0.963 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.235 0.765 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.119 0.881 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.221 0.779 46 H 0.114 0.886 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 1.304 -17.055 -12.773 21.348 hybrid contribution 0.251 1.710 -0.587 1.825 sum 1.555 -15.346 -13.360 20.406 Atomic orbital electron populations 1.70026 1.05198 1.25478 1.54536 1.25016 0.95296 0.98373 1.01248 0.86261 0.79118 0.83598 0.77635 1.21521 1.21878 1.20472 1.19207 0.92744 0.84768 1.40486 0.91631 1.43882 1.35416 1.01597 1.49609 1.20896 0.97851 0.86415 0.92729 1.22289 0.97593 0.99245 0.98434 1.21002 0.99197 0.86520 0.87475 0.89306 1.46188 1.68182 1.06164 1.15851 1.19754 0.76972 0.82610 0.88306 1.90690 1.46596 1.78040 1.26642 1.22970 0.97782 0.95837 0.94050 1.22908 0.94196 0.97793 0.99606 1.22933 0.96681 0.95831 1.00101 1.23580 0.95093 0.98462 0.95413 1.22609 0.99769 0.94923 0.98265 1.22578 0.99573 0.97901 0.94578 1.23309 1.01800 0.91842 0.96163 1.22831 0.87608 0.94064 0.94261 0.93975 1.86346 1.41988 1.38142 1.70030 1.21440 0.89653 0.98485 0.88607 0.93661 0.96262 0.92472 0.92963 0.91252 0.76508 0.91048 0.91284 0.91636 0.91576 0.88126 0.91673 0.91500 0.91457 0.91150 0.90651 0.90888 0.77873 0.88619 0.95482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.66 11.19 55.49 0.62 -25.04 16 2 C 0.00 -0.04 4.91 -17.43 -0.09 -0.13 16 3 Si 0.90 21.38 29.59 -169.99 -5.03 16.35 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 7 C -0.24 -6.56 9.59 -15.06 -0.14 -6.71 16 8 H 0.07 1.78 7.89 -52.48 -0.41 1.36 16 9 N -0.58 -14.41 2.94 -172.32 -0.51 -14.92 16 10 C 0.15 3.24 6.52 -3.71 -0.02 3.22 16 11 C -0.14 -2.61 5.51 -26.61 -0.15 -2.75 16 12 C 0.16 2.91 2.20 -67.89 -0.15 2.76 16 13 H 0.09 1.75 7.58 -51.93 -0.39 1.36 16 14 N -0.71 -10.74 5.05 -53.77 -0.27 -11.01 16 15 C 0.54 8.24 7.16 -10.99 -0.08 8.16 16 16 O -0.54 -10.40 16.17 5.56 0.09 -10.31 16 17 C -0.10 -1.17 1.26 -150.39 -0.19 -1.36 16 18 C -0.11 -1.04 6.02 -23.26 -0.14 -1.18 16 19 C -0.12 -0.93 6.26 -23.27 -0.15 -1.08 16 20 C -0.11 -0.86 5.19 -85.35 -0.44 -1.30 16 21 C -0.12 -0.91 6.21 -24.34 -0.15 -1.07 16 22 C -0.11 -1.02 5.86 -24.34 -0.14 -1.16 16 23 C -0.09 -1.00 5.67 -22.45 -0.13 -1.12 16 24 C 0.07 1.34 3.38 -26.62 -0.09 1.25 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 26 O -0.56 -9.85 12.09 -35.23 -0.43 -10.28 16 27 C 0.15 3.31 4.95 -3.71 -0.02 3.29 16 28 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.07 1.40 7.61 -51.93 -0.40 1.00 16 33 H 0.40 5.35 8.25 -40.82 -0.34 5.01 16 34 H 0.07 0.64 7.80 -51.93 -0.41 0.23 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.46 7.83 -51.93 -0.41 0.05 16 38 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.45 7.83 -51.93 -0.41 0.05 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.60 7.80 -51.93 -0.41 0.19 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.07 0.82 8.14 -51.92 -0.42 0.39 16 45 H 0.37 5.74 9.08 45.56 0.41 6.15 16 46 H 0.10 2.38 6.04 -51.93 -0.31 2.07 16 47 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 362.56 15.07 5.46 5.46 Total: -1.00 -30.85 362.56 -9.40 -40.25 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -7.26 Total: 8.67 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -2.08 Total: 0.82 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: -0.16 Total: -50.97 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.34 Total: -20.58 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.85 -9.40 -40.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090363047.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.495 kcal (2) G-P(sol) polarization free energy of solvation -30.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds