Wall clock time and date at job start Fri Apr 10 2020 18:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86806 * 120.00120 * 2 1 4 4 H 1.48501 * 109.46946 * 272.91151 * 3 2 1 5 5 H 1.48496 * 109.46962 * 32.91621 * 3 2 1 6 6 H 1.48503 * 109.47163 * 152.91385 * 3 2 1 7 7 C 1.38812 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00220 * 339.35169 * 7 2 1 9 9 N 1.36945 * 120.00080 * 159.35653 * 7 2 1 10 10 C 1.46924 * 120.63104 * 152.61811 * 9 7 2 11 11 C 1.53185 * 108.89269 * 126.34003 * 10 9 7 12 12 C 1.53358 * 109.15267 * 54.57322 * 11 10 9 13 13 H 1.08999 * 109.42667 * 58.76126 * 12 11 10 14 14 N 1.46499 * 109.40648 * 178.67762 * 12 11 10 15 15 C 1.34770 * 120.00261 * 275.12167 * 14 12 11 16 16 O 1.21281 * 120.00322 * 0.02562 * 15 14 12 17 17 C 1.50703 * 119.99962 * 180.02562 * 15 14 12 18 18 C 1.53949 * 113.58076 * 279.24771 * 17 15 14 19 19 C 1.53079 * 86.72361 * 220.68822 * 18 17 15 20 20 C 1.52904 * 121.17454 * 150.58864 * 19 18 17 21 21 C 1.53955 * 86.78303 * 100.74569 * 20 19 18 22 22 C 1.52913 * 121.06539 * 259.12069 * 19 18 17 23 23 C 1.52904 * 88.06785 * 24.83411 * 19 18 17 24 24 C 1.53033 * 109.60622 * 298.71596 * 12 11 10 25 25 H 1.09005 * 109.49569 * 181.32117 * 24 12 11 26 26 O 1.42901 * 109.52193 * 301.40118 * 24 12 11 27 27 C 1.46926 * 120.62674 * 332.63428 * 9 7 2 28 28 H 0.96999 * 120.00138 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.58593 * 246.19713 * 10 9 7 30 30 H 1.08994 * 109.58550 * 6.48051 * 10 9 7 31 31 H 1.09000 * 109.50049 * 174.65500 * 11 10 9 32 32 H 1.09004 * 109.49938 * 294.75423 * 11 10 9 33 33 H 0.97005 * 119.99538 * 95.12387 * 14 12 11 34 34 H 1.09003 * 112.82454 * 50.33768 * 17 15 14 35 35 H 1.08998 * 113.66011 * 335.13220 * 18 17 15 36 36 H 1.08996 * 113.66336 * 106.18897 * 18 17 15 37 37 H 1.09000 * 113.66689 * 215.21967 * 20 19 18 38 38 H 1.09008 * 113.66264 * 346.27795 * 20 19 18 39 39 H 1.08995 * 113.58047 * 270.12537 * 21 20 19 40 40 H 1.09005 * 113.64780 * 139.34459 * 21 20 19 41 41 H 1.08996 * 113.66042 * 13.63812 * 22 19 18 42 42 H 1.08998 * 113.66027 * 144.68703 * 22 19 18 43 43 H 1.08998 * 113.66156 * 220.69489 * 23 19 18 44 44 H 1.08998 * 113.74696 * 89.65279 * 23 19 18 45 45 H 0.96704 * 113.99772 * 179.85606 * 26 24 12 46 46 H 1.08998 * 109.59055 * 353.37685 * 27 9 7 47 47 H 1.09004 * 109.58537 * 113.80527 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4361 2.0820 -1.3983 5 1 1.4798 2.6341 0.7608 6 1 3.5772 1.4232 0.6375 7 6 2.0101 -1.2022 0.0005 8 1 1.5222 -2.1073 0.3308 9 7 3.3137 -1.2404 -0.4176 10 6 4.2349 -2.2631 0.0963 11 6 4.8755 -2.9937 -1.0879 12 6 5.5291 -1.9657 -2.0195 13 1 6.2782 -1.3996 -1.4659 14 7 6.1709 -2.6610 -3.1379 15 6 7.4212 -3.1453 -3.0020 16 8 8.0150 -3.0060 -1.9537 17 6 8.0815 -3.8601 -4.1528 18 6 7.6477 -5.3303 -4.2951 19 6 9.1140 -5.6414 -4.6055 20 6 9.7256 -6.9993 -4.2592 21 6 9.5434 -7.3627 -5.7441 22 6 9.5883 -5.8533 -6.0437 23 6 9.4925 -4.3818 -3.8256 24 6 4.4625 -1.0095 -2.5579 25 1 4.9251 -0.2942 -3.2380 26 8 3.4626 -1.7540 -3.2565 27 6 3.8175 -0.2593 -1.3883 28 1 -0.4850 0.8400 -0.0004 29 1 5.0114 -1.7875 0.6956 30 1 3.6842 -2.9754 0.7106 31 1 5.6306 -3.6891 -0.7211 32 1 4.1089 -3.5433 -1.6342 33 1 5.6958 -2.7727 -3.9762 34 1 8.0299 -3.2980 -5.0853 35 1 7.2939 -5.7740 -3.3645 36 1 6.9747 -5.5086 -5.1337 37 1 10.7685 -6.9428 -3.9474 38 1 9.1119 -7.5962 -3.5844 39 1 8.5805 -7.8228 -5.9655 40 1 10.3831 -7.9159 -6.1651 41 1 8.8651 -5.5345 -6.7942 42 1 10.5926 -5.4746 -6.2334 43 1 10.2913 -3.8034 -4.2898 44 1 9.6586 -4.5570 -2.7627 45 1 2.7521 -1.2102 -3.6236 46 1 2.9910 0.3489 -1.7557 47 1 4.5599 0.3797 -0.9102 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090496839.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:32 Heat of formation + Delta-G solvation = -21.684798 kcal Electronic energy + Delta-G solvation = -26423.100391 eV Core-core repulsion = 22800.729099 eV Total energy + Delta-G solvation = -3622.371293 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.02902 -39.44237 -38.04808 -35.00547 -34.83398 -34.35180 -32.09825 -30.14967 -29.39467 -26.36675 -26.04267 -25.86223 -24.57277 -23.01072 -22.18924 -21.37540 -19.93621 -19.46984 -18.21391 -17.50771 -17.01321 -16.39831 -15.85280 -15.63960 -15.52433 -15.12517 -14.79288 -14.36543 -14.21308 -14.09077 -13.42277 -13.24558 -13.03593 -12.79388 -12.63716 -12.44866 -12.38156 -12.33951 -12.16627 -11.70354 -11.48707 -11.28023 -11.13443 -10.97065 -10.70866 -10.53442 -10.45310 -10.35777 -10.28747 -10.23608 -10.07520 -9.57014 -9.50559 -9.36155 -8.74820 -8.63989 -6.98985 -5.97359 -3.31947 2.73382 3.23453 3.31621 3.44914 3.47245 4.10097 4.19124 4.32256 4.47373 4.47769 4.49715 4.55299 4.62219 4.90964 5.07243 5.11748 5.15198 5.21829 5.32211 5.34666 5.36823 5.43529 5.50233 5.59823 5.60789 5.63752 5.69234 5.70494 5.75307 5.77458 5.98927 6.05068 6.11755 6.15727 6.24086 6.26755 6.30115 6.38457 6.48082 6.65401 6.77146 6.97309 7.71463 7.90567 8.10738 8.31130 8.39090 8.90783 9.68650 10.06170 11.18763 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.034713 B = 0.002938 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.423310 B = 9526.568753 C = 9570.048568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.021 3.979 3 Si 0.879 3.121 4 H -0.291 1.291 5 H -0.302 1.302 6 H -0.270 1.270 7 C -0.251 4.251 8 H 0.086 0.914 9 N -0.596 5.596 10 C 0.151 3.849 11 C -0.137 4.137 12 C 0.160 3.840 13 H 0.090 0.910 14 N -0.717 5.717 15 C 0.519 3.481 16 O -0.545 6.545 17 C -0.135 4.135 18 C -0.096 4.096 19 C -0.108 4.108 20 C -0.127 4.127 21 C -0.140 4.140 22 C -0.117 4.117 23 C -0.102 4.102 24 C 0.083 3.917 25 H 0.047 0.953 26 O -0.553 6.553 27 C 0.098 3.902 28 H 0.262 0.738 29 H 0.024 0.976 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.402 0.598 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.097 0.903 45 H 0.378 0.622 46 H 0.080 0.920 47 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.962 -9.871 -13.621 24.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.178 4.178 3 Si 0.709 3.291 4 H -0.219 1.219 5 H -0.230 1.230 6 H -0.195 1.195 7 C -0.379 4.379 8 H 0.104 0.896 9 N -0.319 5.319 10 C 0.024 3.976 11 C -0.177 4.177 12 C 0.056 3.944 13 H 0.108 0.892 14 N -0.367 5.367 15 C 0.305 3.695 16 O -0.422 6.422 17 C -0.156 4.156 18 C -0.133 4.133 19 C -0.108 4.108 20 C -0.165 4.165 21 C -0.178 4.178 22 C -0.154 4.154 23 C -0.140 4.140 24 C 0.021 3.979 25 H 0.065 0.935 26 O -0.359 6.359 27 C -0.029 4.029 28 H 0.072 0.928 29 H 0.042 0.958 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.237 0.763 34 H 0.127 0.873 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.102 0.898 43 H 0.088 0.912 44 H 0.115 0.885 45 H 0.225 0.775 46 H 0.098 0.902 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 18.591 -10.177 -12.644 24.679 hybrid contribution -0.272 1.612 -0.599 1.742 sum 18.319 -8.565 -13.243 24.173 Atomic orbital electron populations 1.69834 1.05651 1.26445 1.53192 1.25272 0.95220 0.97361 0.99907 0.87022 0.80211 0.84963 0.76860 1.21926 1.23039 1.19545 1.18927 0.84902 0.94731 1.39366 0.89625 1.44206 1.08782 1.33061 1.45832 1.20915 0.92245 0.91263 0.93140 1.22345 0.99622 0.97914 0.97817 1.21014 0.92717 0.93388 0.87246 0.89212 1.46181 1.15424 1.57862 1.17254 1.20482 0.81417 0.78424 0.89208 1.90679 1.64243 1.57886 1.29423 1.22728 0.98399 0.96458 0.98029 1.22608 0.95104 0.93131 1.02491 1.22458 0.96496 0.95071 0.96746 1.22743 1.01101 0.95997 0.96623 1.22824 1.01940 0.96255 0.96752 1.22661 1.01418 0.96357 0.94979 1.22681 0.94504 0.95149 1.01624 1.22546 0.88738 0.92620 0.93988 0.93497 1.86384 1.37620 1.38042 1.73814 1.22051 0.97988 0.92580 0.90287 0.92797 0.95809 0.91526 0.92478 0.90805 0.76331 0.87286 0.89257 0.90550 0.89942 0.91329 0.90227 0.91612 0.91317 0.89839 0.91151 0.88495 0.77457 0.90215 0.94897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.40 13.97 55.49 0.78 -26.62 16 2 C 0.02 0.59 5.23 -17.43 -0.09 0.50 16 3 Si 0.88 21.86 24.35 -169.99 -4.14 17.72 16 4 H -0.29 -6.85 6.62 56.52 0.37 -6.48 16 5 H -0.30 -7.73 7.11 56.52 0.40 -7.32 16 6 H -0.27 -6.68 6.64 56.52 0.38 -6.31 16 7 C -0.25 -6.92 10.03 -15.06 -0.15 -7.07 16 8 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 9 N -0.60 -13.99 2.71 -172.32 -0.47 -14.45 16 10 C 0.15 3.09 6.50 -3.72 -0.02 3.07 16 11 C -0.14 -2.47 5.54 -26.45 -0.15 -2.62 16 12 C 0.16 2.68 2.20 -67.73 -0.15 2.53 16 13 H 0.09 1.61 7.58 -51.93 -0.39 1.22 16 14 N -0.72 -9.92 5.05 -53.61 -0.27 -10.19 16 15 C 0.52 7.26 7.32 -10.99 -0.08 7.18 16 16 O -0.54 -9.68 15.56 5.56 0.09 -9.59 16 17 C -0.13 -1.36 4.14 -90.79 -0.38 -1.74 16 18 C -0.10 -0.87 7.40 -26.20 -0.19 -1.06 16 19 C -0.11 -0.88 1.11 -154.63 -0.17 -1.06 16 20 C -0.13 -0.97 7.84 -26.28 -0.21 -1.18 16 21 C -0.14 -0.93 8.08 -25.75 -0.21 -1.14 16 22 C -0.12 -0.80 7.84 -26.28 -0.21 -1.00 16 23 C -0.10 -1.01 7.16 -26.29 -0.19 -1.19 16 24 C 0.08 1.40 3.38 -26.62 -0.09 1.31 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 O -0.55 -9.34 12.10 -35.23 -0.43 -9.76 16 27 C 0.10 2.05 3.84 -3.71 -0.01 2.04 16 28 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 1.36 7.93 -51.93 -0.41 0.95 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 1.42 7.62 -51.93 -0.40 1.03 16 33 H 0.40 4.85 8.26 -40.82 -0.34 4.51 16 34 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 0.92 8.09 -51.93 -0.42 0.50 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.10 1.14 7.44 -51.93 -0.39 0.76 16 45 H 0.38 5.58 9.08 45.56 0.41 6.00 16 46 H 0.08 1.78 4.50 -51.93 -0.23 1.55 16 47 H 0.03 0.69 7.08 -51.93 -0.37 0.33 16 LS Contribution 363.38 15.07 5.48 5.48 Total: -1.00 -32.07 363.38 -8.48 -40.55 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -7.22 Total: 8.32 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -2.30 Total: -1.44 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: 0.04 Total: -51.26 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.34 Total: -19.36 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.14 Total: 17.72 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.07 -8.48 -40.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090496839.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.863 kcal (2) G-P(sol) polarization free energy of solvation -32.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds